BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472318 Length=847 Score E Sequences producing significant alignments: (Bits) Value AT1G20823.1 | Symbols: | RING/U-box superfamily protein | chr1... 1157 0.0 > AT1G20823.1 | Symbols: | RING/U-box superfamily protein | chr1:7238800-7239669 FORWARD LENGTH=870 Length=870 Score = 1157 bits (626), Expect = 0.0 Identities = 758/820 (92%), Gaps = 16/820 (2%) Strand=Plus/Plus Query 1 CTCTCAAACTCAAATCAATCTTCTTCCATTTTTCAAATTTTATacaca-acaacaacaac 59 |||||||||||||||||| |||||||||||||||||| ||| | ||| || |||||||| Sbjct 1 CTCTCAAACTCAAATCAACCTTCTTCCATTTTTCAAA--TTACAAACATAC-ACAACAAC 57 Query 60 aacaaAACTTCTTACTCGCTAGAAATGGCTCGCCTTCTCTTCCGTCTTCTCGTAGAATCC 119 |||||||| |||||||| || |||||||||||||||||| |||||||||||||||||| Sbjct 58 AACAAAACCTCTTACTCACT-CCAATGGCTCGCCTTCTCTTTCGTCTTCTCGTAGAATCC 116 Query 120 AACACCCCGTCGCCGGCGATTGATAACTCCACCGCCGCGTTGAATTCCGATCTCGTCGTC 179 ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 117 AACACTCCGTCTCCGGCGATTGATAACTCCACCGCCGCGTTGAATTCTGATCTCGTCGTC 176 Query 180 ATCCTCGCTGCTCTCCTCTGCGCCTTGATTTGTGTTCTCGGCTTGATCGCCGTTTCTCGA 239 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 177 ATCCTCGCTGCTCTCCTCTGCGCCTTGATTTGCGTTCTCGGCTTAATCGCCGTTTCTCGA 236 Query 240 TGCGTCTGGCTCCGTCGTTTTGCAGCCGGAAACAGAACAGTCTCCGGATCTCAAGGTCAA 299 || ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| Sbjct 237 TGTGTCTGGCTCCGTCGTCTCGCAGCCGGAAACAGAACAGTCTCCGGATCTCAAACTCAA 296 Query 300 TCTCCTCCACCTCCAGTCGCAGCGGCGAACAAAGGCCTGAAGAAGAAGGTTCTCCAATCT 359 ||||||| |||||| || ||||||||||||||||||||||||||||| || || |||||| Sbjct 297 TCTCCTCAACCTCCGGTGGCAGCGGCGAACAAAGGCCTGAAGAAGAAAGTCCTTCAATCT 356 Query 360 CTCCCGAAACTTGCCTTCTCGCCGGAGTCACCGGAATCGGAGAAATTCGCCGAGTGTGCG 419 |||||||| ||| | |||||||| |||||||| || |||||||||||||| ||||| ||| Sbjct 357 CTCCCGAAGCTTACGTTCTCGCCAGAGTCACCTGAGTCGGAGAAATTCGCAGAGTGCGCG 416 Query 420 ATCTGTCTAGCTGAATTCTCCGCCGGCGACGAGCTCCGAGTTTTACCGCAGTGTGGTCAC 479 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 417 ATCTGTCTAGCTGAATTCTCTGCCGGCGACGAGCTCCGAGTTTTACCGCAGTGTGGTCAC 476 Query 480 GGATTCCACGTGTCTTGCATTGACACGTGGCTAGGATCTCACTCGTCTTGTCCTTCTTGC 539 || ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 477 GGGTTCCACGTGGCTTGCATTGACACGTGGCTAGGATCTCACTCGTCTTGCCCTTCTTGC 536 Query 540 CGTCAGATCTTGGTTGTTGCCAGGTGTCACAAGTGTGGCGGTTTACCCGGTAGCTCTAGC 599 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 537 CGTCAGATCTTGGTTGTTGCCAGGTGTCACAAGTGTGGAGGTTTACCCGGTAGCTCTAGC 596 Query 600 TCCGGACCCGAATCCGAACCCGAAATCGAGATCCGAATCAAACAAGGCGAAGATGATCCC 659 ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 597 TCCGGACTTGAATCCGAACCCGAAATCGAGATCCGAATCAAGCAAGGCGAAGATGACCCC 656 Query 660 AACTCCTTCTTGCCTTGATCA-TTTACTTTCCCATTTATTTTATTAGAAAACTAGTATAA 718 |||||||||||||| | |||| |||| ||||||||||| ||||||||||||| | | | Sbjct 657 AACTCCTTCTTGCCATAATCATTTTAGTTTCCCATTTA-TTTATTAGAAAAC---TCT-A 711 Query 719 TTTAATTTAATGCAGATCATCATTTTAGTGGGATAGTGTTTAGTCTCTTAATGTACATGG 778 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 712 --TAATTTAATGCAG---ATCATTTTAGTGGGATAGTGTTTAGTCTCTTGATGTACATGG 766 Query 779 TTTATTGTAATTTGTAAATGTTGTATGAATTGGAAAATTT 818 |||||||||||||||||||||||||||||||||||||||| Sbjct 767 TTTATTGTAATTTGTAAATGTTGTATGAATTGGAAAATTT 806 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41292468834 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5