BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472324
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2429 0.0
> AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262043-7265438 REVERSE LENGTH=2091
Length=2091
Score = 2429 bits (1315), Expect = 0.0
Identities = 1784/1996 (89%), Gaps = 90/1996 (5%)
Strand=Plus/Plus
Query 1 CCAACGCTTGATTCGAATTCGTCTCTTCAC-TATTC-GTCGCAATC-ACCAATTGAGCAA 57
||||||||||||||||||||||||| || | | ||| || | || |||||||||||||
Sbjct 138 CCAACGCTTGATTCGAATTCGTCTC-TCTCGTTTTCTGTTG--TTCTACCAATTGAGCAA 194
Query 58 CCCTAGACCCATAC-T-TGTACCTACCGGCACCGACTCTTCTCTTCTTCCGTGGCCCATC 115
||||||| ||| | | |||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 195 CCCTAGAATCATTCTTGTGTACCTACCGGAACCGAGTCTTCTCTTCTTCCGTGGCACATC 254
Query 116 TTTCAAAGtttttatttttaaaccccttttcccctcctaacttctttt-ttttttctgtt 174
|||||||| ||||||||||||||| || ||||||||||||| |||||||| |
Sbjct 255 TTTCAAAG-------TTTTAAACCCCTTTT--CC-CCTAACTTCTTTTCATTTTTCTG-T 303
Query 175 ttttttcccgggaaattttctctctct-t-t-t-ttttttCATGATCAT-TTACTTG-TC 228
||||||||||||||||||||||||||| | | | |||||| | || | | | || ||
Sbjct 304 TTTTTTCCCGGGAAATTTTCTCTCTCTCTCTCTATTTTTTGTTTCTC-TCGT-CATGATC 361
Query 229 A--AAATGTCAAGTATGATCCTTTATTAGGTTTCTTTGGGGCCGATCTCGCTTTTTCTGT 286
| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 362 ATTACTTGTCAAGTATGATCCTTTATTAGGTTTCTTTGGGGCCGATCTCACTTTTTCTGT 421
Query 287 TTCTCTCCTTATTCTCTTCGCAGACCCTTGTAAACCCTAGAATCTACTC-TTTC-AATTC 344
||||| || | ||||||||| || ||||||||||||||||||||| ||| |||| ||||
Sbjct 422 TTCTCACCCTCTTCTCTTCGAAGGCCCTTGTAAACCCTAGAATCTCCTCTTTTCAAATT- 480
Query 345 GATGGTGTTCTGTATCTTCATCTTCAGGTTTACTCATTCAATTTATCTCTAGGGTTTACT 404
|| |||||||| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 481 TAT-ATGTTCTGTTTCTTCATCTTCAGGTTTAATCATTCAATCTATCTCTAGGGTTTACC 539
Query 405 GGGTCAAGTC--A--A--AG-----GTCCATACTTGTTCAAAGTTTCAGTCTTTGGTTCT 453
|||||||||| | | | ||||||||| |||||||||| ||||||||||||
Sbjct 540 GGGTCAAGTCTTAGGATCTGTCTCTATCCATACTTCATCAAAGTTTCCGTCTTTGGTTCT 599
Query 454 AACT-CATGGCGTATCATTCGATTCCGAGCTCTGGGTTTCATTACTTGAACTCTCCTTTT 512
|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 AA-TCCATGGCGTATCATTCGATTCCGAGCTCTGGGTTTCATTACTTGAATTCTCCTTTT 658
Query 513 GGTGATACAACCTTTATTAAAGTCTTTGTGGGTGGCCTTGCCTGGGAGACTCAAAGCGAG 572
||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 GGTGACACAACCTTTACTAAAGTCTTTGTTGGTGGCCTTGCCTGGGAGACTCAAAGCGAG 718
Query 573 ACTCTTCGTCGGCATTTCGAACAATATGGTGATATCCTTGAGGCGGTTGTGATTACTGAT 632
|||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||
Sbjct 719 ACTCTTCGTCGGCATTTCGATCAATATGGTGATATCCTTGAGGCTGTCGTTATTACTGAT 778
Query 633 AAGAACACCGGTCGATCCAAAGGTTACGGCTTTGTGACTTTCCGAGATCCAGAGGCTGCT 692
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 AAGAACACTGGTCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAGGCTGCT 838
Query 693 AGGAGAGCATGTGTCGACCCAGCACCTATTATAGATGGCAGACGAGCGAATTGTAATCTC 752
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGGAGAGCCTGTGTCGATCCAACACCTATTATAGATGGCAGACGAGCGAATTGTAATCTC 898
Query 753 GCTTCTCTTGGGAGGCCTCGGCTTCCAATGCAATATGCAGTGATACCCCATGTTCCTGGA 812
|||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 899 GCTTCTCTTGGGAGATCTAGGCCTCCAATGCAATATGCAGTGATACCCCATGCTCCTGGA 958
Query 813 CGGATAAGACCTGTTTCCCCATATGTTGGAAGTGTGCAGAGTCCTCGCGG-TT-CACTCT 870
||| |||||||| |||||||||||||||||||||||||||||||||||| || || | |
Sbjct 959 CGGGTAAGACCTCCTTCCCCATATGTTGGAAGTGTGCAGAGTCCTCGCGGTTTGCA-T-T 1016
Query 871 TTGGAAGCCATCCGTATCACCAACCACCTGCTTATAACTACCAACAAGGAATGGTGTACC 930
||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 1017 TTGGAAGCCATCCGTATCACCAACCCCCTACTTATAACTACCAACAAGGAGTGGTGTACC 1076
Query 931 CTTATGGGGTTACACCATATGGACCTGACTACATGTACTCACAGTCTCAAGGCTTCTATG 990
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1077 CTTATGGGGTTACACCATATGGACCTGACTACATGTACTCACAGTCTCAGGGTTTCTATG 1136
Query 991 GTCCTTACATGGGTCAACAGTACCTTCAGGTTTATGGAGTACCTGGGGCAGTTAACTCAC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTCCTTACATGGGTCAACAGTACCTTCAGGTTTATGGAGTACCTGGGGCAGTTAACTCAC 1196
Query 1051 CGGGTTATCAATATGGGCAA-TATAGTCAGACTATTCCTGGTGGTCACGGTTATACAGCA 1109
|||||||||||||||||||| | || || ||||||||||||| |||||||||||||||
Sbjct 1197 CGGGTTATCAATATGGGCAACTG-AGCCATACTATTCCTGGTGCTCACGGTTATACAGCG 1255
Query 1110 GTTCAAGGTTATTCACATCCAGGAAGTCATGTTCTACAGCTTGGTGCAACTTCACCTATG 1169
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1256 GGTCAAGGTTATTCACATCCAGGAAGTCATGTTCTACAGCTTGGTGCCACTTCACCTATG 1315
Query 1170 GCTGCTATTCAATCTCCATACCCTTCGGCTTCTA-CTCCAACGCAGCAACGTATCATTGT 1228
||||||||||||||||||||||||| |||| | |||||||||| |||||| |||| ||
Sbjct 1316 TCTGCTATTCAATCTCCATACCCTTCTCCTTC-AGCTCCAACGCACCAACGTGTCATCGT 1374
Query 1229 CCAGACTCCTCCTCAGTATATGCAGAGTAGCAGTTCTGATCAAACAACAGGGTGAAAAAT 1288
||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |
Sbjct 1375 CCAGACTCCTCCTCAGTATATACAGAGTAGCGGTTCTGATCAGACAACAGGGTGA----T 1430
Query 1289 GGATCAACTTATTAATCCTTGAAGACTGCAGAAAAGGGA------C-A--A-A--TGCTA 1336
||||||| |||||||| |||| ||||||||||||| | | | | |||||
Sbjct 1431 ----CAACTTAGTAATCCTTAAAGATTGCAGAAAAGGGAAGAAGTCCAGGACAAATGCTA 1486
Query 1337 CTCGGGCAGGATTCCTGTTTAAACTTTGCACATTATTTTTATTT-GCATTCTAGAGGTAT 1395
||| |||||| ||||||||||| ||| ||||||||||| | ||| |||||||||||||||
Sbjct 1487 CTCTGGCAGGCTTCCTGTTTAAGCTTAGCACATTATTTAT-TTTCGCATTCTAGAGGTAT 1545
Query 1396 TAAGTAGTCTTGCTCACTGAAGAAGTCAAAAAAGGGGGAAAGGAGAATGGAAGTTTCAGG 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TAAGTAGTCTTGCTCACTGAAGAAGTCAAAAAAGGGGGAAAGGAGAATGGAAGTTTCAGG 1605
Query 1456 TGTTTGTGCTTCTGTTATCTTTAACCCTCTCATCATATGTATATAGCCCACAACAAGCTT 1515
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1606 -GTTTGTGCTTCTGTTATCTTTAACCCTCTCATCCTATGTATATAGCCCACAACAAGCTT 1664
Query 1516 GATGGCATTAACTATATGAATGGTTTCACCCCGGAAACAAGAGTTTTCGCGGTAAACCGG 1575
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 1665 GATGGCATAAACTATATGAATAGTTTCACCCCGGAAACAAGGGTTTTCGCGGTAAACTGG 1724
Query 1576 TAGGAATAAGTTTGGTGTACAAAGAAAGTGAATATATAAATAAACACATACAGA--TGCA 1633
||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||
Sbjct 1725 TAGGAATAAGTTTGGTGTACAAAGAAAGTTCATATATATATAAACACATACATAAATGCA 1784
Query 1634 TATAGAATGGTGGAATCAAAATCTGATTCTTTTATGTGGTTAAATTAGTCTTCTTACTAC 1693
||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1785 TATAGAATGGTGGAATCAACATCTGATTCTTTTGGGTGGTAAAAGTAGTCTTCTTACTAC 1844
Query 1694 ACACTTTCTCAAGGCGTAGGAGTGTTGGTAAGATTATTAGGTAGACTTTT-ATGTCCTCT 1752
||||| ||| ||||| || |||||||||||| |||| |||||||| || | | |||||||
Sbjct 1845 ACACTCTCTTAAGGCATATGAGTGTTGGTAATATTACTAGGTAGA-TTCTCACGTCCTCT 1903
Query 1753 CAAGTCGAGTCCTCTGCATTGTAAGTAAAAAATTAATGACTATGGAGTTCACTTTAGCTT 1812
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1904 TGAGTCAAGTCCTCTGCATTGTAAGTAAAAAATTAATGACTATGGAGCTCACTTCAGCTT 1963
Query 1813 CTTTGTCTGTGGATATATTTTAGCTCCAGGATTCTTATCTTTTCTCTGTCTGTACAGTTT 1872
||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1964 CTTTGTCTGTGCATAAATTTTAGCTCCAGGATTCTTCTCTTTTCTATGTCTGTACAGTTT 2023
Query 1873 CTACTTTTTAGACTCATAAATTGTTCTTCTTAATTGTTTTCTGTCTATGACTCCCATCTT 1932
||| |||| ||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 2024 CTA-------GACTGATAAATTGTTCTTCTCAATTGTTT-CTGTCTATGACTCCTATCTT 2075
Query 1933 CTGCTCTGATTCCTCT 1948
|| |||||||||||||
Sbjct 2076 CTACTCTGATTCCTCT 2091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96485447490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5