BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472335
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06550.1 | Symbols: | transposable element gene | chr2:2602... 1116 0.0
AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 379 2e-104
AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 289 3e-77
> AT2G06550.1 | Symbols: | transposable element gene | chr2:2602742-2603484
REVERSE LENGTH=743
Length=743
Score = 1116 bits (604), Expect = 0.0
Identities = 697/743 (94%), Gaps = 1/743 (0%)
Strand=Plus/Plus
Query 1 ACAGAAATGTACTGCTGCAATTAGGCGTTTGGCATATGGTCTTGCAAACGATGCGATGGA 60
||||||||||||| | |||||||||||| |||||||||||||||||||| ||| |||| |
Sbjct 1 ACAGAAATGTACTACCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACAATGTGATGAA 60
Query 61 CGAATACCTCCGCATGGGCGCAACCACTGTGAGCCAAGCACTAGAGAATTTTGTAGATGG 120
|| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 61 CGCATACCTCCGCATGGGCGCAACCACTATGAGTCAAGCACTAGAGAATTTTGTAGATGG 120
Query 121 CATAATAAATTTATTCCAAGACGAATATTTGAGGCGGCCTACACGTGAGGATCTAGAACG 180
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGACCTACACGTGAGGATCTAGAACG 180
Query 181 GTTACTTCATTCTGGAAAGGAACGCGGATTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GTTACTTCATTTTGGAAAAGAACGCGGTTTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
Query 241 GCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGACAGTATTCACGCGGACATGG 300
||||| ||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 241 GCATTAGGAGTGGAATAATTGTACTACAGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300
Query 301 AAAACCCACTATTGTTTTAGAGGCCGTGGCATCACAAGATTTATGGATTTGGCATGCttt 360
|||| |||||||| |||||||||||||| ||| |||||| |||||||||| ||||||||
Sbjct 301 AAAATCCACTATTATTTTAGAGGCCGTGACATTTCAAGATCTATGGATTTGACATGCTTT 360
Query 361 ttttGGGGCTCCAGGTACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGTTTGA 420
|||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTTTGGGG-TTCAAGTACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGGTTGA 419
Query 421 TGATATATTAGAAGGTCGAGCTCCACGACTCAGGTACGAAGTCAATGGACATCAATACAA 480
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAAGTACGAAATCAATGGACATCAAAACAA 479
Query 481 AATGGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAAT 540
||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 480 AATGGGTTATTACCTCACATATGATATATATCCGAAGTGGGGAACATTCATCCAATCAAT 539
Query 541 TACCCGCCCACAAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 600
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACCCGTCCACGAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 599
Query 601 AGATGTCGAGCGTGCTTTTGGAGTCTTGCAGGCTCGGTTTGCTATTATTCGAAACCCAGG 660
||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 600 AGATGTCGAACGTGCTTTTGGAGTCTTGCAGGCTCAGTTTGCTATTATTTGAAACCTAGG 659
Query 661 TCTGTTTTGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAA 720
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TCTGTTTTGGGATAAAGAGGGAATGGGCAAAATAATGAGAGCATGTATCATATTGCACAA 719
Query 721 TATGATTGTAGAAGATGAACGAG 743
||||||| |||||||| ||||||
Sbjct 720 TATGATTATAGAAGATAAACGAG 742
> AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475
REVERSE LENGTH=3840
Length=3840
Score = 379 bits (205), Expect = 2e-104
Identities = 441/553 (80%), Gaps = 24/553 (4%)
Strand=Plus/Plus
Query 203 CGCGGA-TTTCCGGGAATGGTAGGAAGCATTGACTGTATGCATTGGGAGTGGAAGAATTG 261
|||||| |||| ||| ||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 546 CGCGGATTTTCAGGG-ATGATTGGAAGCATCGACTGTATGCATTGGGAGTGGAAGAATTG 604
Query 262 TCCTACGGCTTGGAAAGGACAGTATTCACGCGGA-CATGGAAAACCCACTATTGTTTTAG 320
|| || |||||||||| |||||| | || || | ||||||||| |||||||||||||
Sbjct 605 CCCCACCTCTTGGAAAGGCCAGTATACGCGAGGCTC-TGGAAAACCAACTATTGTTTTAG 663
Query 321 AGGCCGTGGCATCACAAGATTTATGGATTTGGCATGCtttttttGGGGCTCCAGGTACGT 380
|||| || |||||||||||| | ||||| || || || |||||||| ||| |||||| |
Sbjct 664 AGGCAGTCGCATCACAAGATCTCTGGATATGACACGCGTTTTTTGGACCTCTAGGTACCT 723
Query 381 GTAAT-GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGA 439
||| ||||| ||| ||||||| || ||||| || |||||||| || ||| ||||||||
Sbjct 724 -TAAACGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGA 782
Query 440 GCTCCACGACTCAG-GT-ACGAAGTCAATGGAC-ATCAATACAAAATGGGTTATTACCTC 496
|||||| | | | || | || ||||| |||| | | || || ||| ||| || |||
Sbjct 783 GCTCCAA-A-TGTGCGTTATGAGGTCAACGGACGAG-AGTATAATTTGGCTTACTATCTC 839
Query 497 ACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAATTACC-CGCCCACAAGG 555
|||||||||||||| ||||| ||||| || || || ||||| ||| | | ||||||||
Sbjct 840 ACAGATGGTATATAACCGAAATGGGCGACTTTTATACAATCTATT-CGACTTCCACAAGG 898
Query 556 ACCGAAAG-CATCATTATTTGC-T-AGTTGTCAAGAAGCAGTGAGAAAAGATGTCGAGCG 612
| |||| |||| |||||||| | | | ||||||||| || | ||||||||||||||
Sbjct 899 TC-GAAAATCATCTTTATTTGCATCA-TA-TCAAGAAGCCGTTCGTAAAGATGTCGAGCG 955
Query 613 TGCTTTTGGAGTCTTGCAGGCTCGGTTTG-CTATTATTCGAAACCCAGGTCTGT-TTTGG 670
||| |||||||| ||| | ||||||||| | |||||| |||||||| ||| | |||||
Sbjct 956 TGCATTTGGAGTATTGTAAGCTCGGTTTCAC-ATTATTAAAAACCCAGCTCT-TATTTGG 1013
Query 671 GATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTGTA 730
||||| || ||| || || || ||| | |||||||||||||||||||||||||||||
Sbjct 1014 GATAAGGAAAAAATAGGAAATATTATGCGGGCATGTATCATATTGCACAATATGATTGTT 1073
Query 731 GAAGATGAACGAG 743
||||| |||||||
Sbjct 1074 GAAGACGAACGAG 1086
> AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015
REVERSE LENGTH=911
Length=911
Score = 289 bits (156), Expect = 3e-77
Identities = 388/495 (78%), Gaps = 35/495 (7%)
Strand=Plus/Plus
Query 270 CTTGGAAAGGACAGTATTCACGCG-GAC-ATGGAAAACCCACTATTGTTTTAGAGGCCGT 327
|||||||||| ||||| | ||||| | | ||||||||| || |||||||||||||| ||
Sbjct 227 CTTGGAAAGGCCAGTA-T-ACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGT 284
Query 328 GGCATCACAAGATTTATGGATTTGGCATGC-tttttttGGGGCTCCAGGTACGTGT-AAT 385
|||||||||||| | ||||| ||||| || ||||||||| |||||||||| | | ||
Sbjct 285 CGCATCACAAGATCTCTGGATATGGCACGCATTTTTTTGGACCTCCAGGTACCT-TAAAC 343
Query 386 GATATAAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCTCCA 445
||||| ||| ||||||| || ||||| || |||||||| || ||| ||||||||||||||
Sbjct 344 GATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCCA 403
Query 446 CGACTCAG-G-TACGAA-GTCAA--TGGACA-TC-A-A-TACAAAATGGGTTATTACCTC 496
| | | | ||| || ||||| | ||| | | | || || ||| ||| || |||
Sbjct 404 --AATTTGCGTTAC-AAGGTCAACGTCAACAGACGAGAGTATAATTTGGCTTACTATCTC 460
Query 497 ACAGATGGTATATATCCGAAGTGGGCA-ACATTCATCCAATCAATTAC-CCGCCCACAAG 554
|||||||||||||||||||| | || | || || |||||||| ||| | | |||||||
Sbjct 461 ACAGATGGTATATATCCGAAAT-GGAAGACTTTTATCCAATCTATT-CGACTTCCACAAG 518
Query 555 GACCG-AAAGCATCATTATTTGCTAGT--TGTCAAGAAGCAGTGAGAAAAGATGTCGAGC 611
| || ||| |||| |||||||| | | | ||||||| | || | |||||||||||||
Sbjct 519 G-TCGAAAATCATCTTTATTTGC-A-TCATATCAAGAAACCGTCCGTAAAGATGTCGAGC 575
Query 612 GTGCTTTTGGAGTCTTGCAGGCTCGGTTTGC-TATTATTCGAAACCCAGGTCTGT-TTTG 669
|||| |||||||| ||||| ||||||||| | |||||| ||||||| ||| | ||||
Sbjct 576 GTGCATTTGGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCT-TATTTG 633
Query 670 GGATAAAGAGCGAAT-GGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATTG 728
|||||| || ||| || || || ||| || |||||||||||||||||||||||||||
Sbjct 634 GGATAAGGAAAAAATATGG-AATATTATGCGAACATGTATCATATTGCACAATATGATTG 692
Query 729 TAGAAGATGAACGAG 743
| ||||| |||||||
Sbjct 693 TTGAAGACGAACGAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5