BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472344
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21065.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1219 0.0
> AT1G21065.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa
- 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink). | chr1:7374210-7375789 FORWARD
LENGTH=799
Length=799
Score = 1219 bits (660), Expect = 0.0
Identities = 760/806 (94%), Gaps = 15/806 (2%)
Strand=Plus/Plus
Query 1 ATGGTGATGATGGTGAAAGTGAAAGGCCCTATTGGGAGATTTTGGTTTGGAGTTGGAGGA 60
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATGGTGATGATGGTGAAAGTGAAAGGCCTTATTGGGAGGTTTTGGTTTGGAGTTGGAGGT 60
Query 61 GGAATTTTGTTGGCCATTGTTGTTGTTATTATTGGGCTTAGAGGAACACTAAAAGCTATG 120
|| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGGATTGTGTTGGCCATTGTTGTTGTTATTATTGGGCTTAGAGGAACACAAAAAGCTAT- 119
Query 121 CAGAGCTCGACGATCTTGTTCTCTGGTGTTGTTCCTCTGCGTGTGAGATCGGTTTTGACT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 --GAGCTCGACGTTCTTGTTCTCTGGTGTTGTTCCTCTGCGTGTGAGATCGGTTTTGACT 177
Query 181 CCAGCGAATCCAGCTACCGATCGAGCTTCAATGGCGAGTTCCTCTGGTCCTAAGTGGGCT 240
||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 178 CCAGCTAATCCGGCTACCGATAGAGCTTCAATGGCGAGTTCCTCTGGTGCTAAGTGGGCT 237
Query 241 CAGAAAACCATCACACTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGATA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAGAAAACCATCACGCTTCCACCGCTACGTCGTGGATGTCATCTTATTACTCCAAAGATA 297
Query 301 GTGAAGGAAAT-TGGGCAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTT 359
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGAAAGAAATAAGGG-AAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTT 356
Query 360 GCAACACACGAGTGCTTCTTTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGA 419
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGTTCAGGCTGA 416
Query 420 TACTGAGACTTTCTTGAACAGGATTGTTCCTGAGGGGAATTCAGCGCCTTGGAGGCATAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TACTGAGACTTTCTTGAACAGGATTGTTCCTGAGGGGAATTCAGCGCCTTGGAGGCATAC 476
Query 480 CATGGAAGGTCCTGATGACATGCCAGCTCATATCAAATCATCAATGTTTGGATGTCAACT 539
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 TATGGAAGGTCCTGATGACATGCCAGCTCATATCAAGTCATCAATGTTTGGATGTCAACT 536
Query 540 CACAATCCCAATAACAAAAGGCAAACTCAACATGGGAACTTGGCAGGGAATATGGCTCTG 599
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 537 CACAATCCCAATAACAAAAGGAAAACTCAGCATGGGAACTTGGCAGGGAATATGGCTCTG 596
Query 600 TGAACACCGTGATGCTCCAACCGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAT 659
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 597 TGAACACCGTGATGCTCCAACAGCACGCAGAGTTGTGGTCACTCTCAATGGAATCTAGAG 656
Query 660 ATGTTTCTTCATGTTAGATTGCTTGTAACCTCGTGGT-TTTTAATAGATTTT-ACAGTCT 717
|||| |||||| ||||||| |||||||||||||| | |||||||||||||| |||||||
Sbjct 657 ATGTCTCTTCACGTTAGATGGCTTGTAACCTCGTAATGTTTTAATAGATTTTTACAGTCT 716
Query 718 TGTAATGAAATTTGACTTTCTATATGAGACAATGCTGCCACTTTGTCCACATTGTGGTGT 777
||||||||||||||||||||||||||| | | | | |||||||||||||| ||||||
Sbjct 717 TGTAATGAAATTTGACTTTCTATATGA-A-A---C--C-ACTTTGTCCACATTTTGGTGT 768
Query 778 TTATTGCATCAGAAAAATTCATATTT 803
|||||||||||||||||| |||||||
Sbjct 769 TTATTGCATCAGAAAAATCCATATTT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39082166366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5