BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472346 Length=1523 Score E Sequences producing significant alignments: (Bits) Value AT1G21080.3 | Symbols: | DNAJ heat shock N-terminal domain-con... 1901 0.0 > AT1G21080.3 | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:7378538-7382661 REVERSE LENGTH=1873 Length=1873 Score = 1901 bits (1029), Expect = 0.0 Identities = 1190/1260 (94%), Gaps = 41/1260 (3%) Strand=Plus/Plus Query 1 AGGAGCGGTTGAGTTGAAATTGGCTGGCGCGTACTCGTCAACG--ACGCGCGTGGAGTGT 58 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 200 AGGAGCGGTTGAGTTGAAATTTGCTGGCGCGTACTCGTCAACGTAACGCGCGTGGAGTGT 259 Query 59 TTTCGTG----------TCCTCCTCCTCCTCACTTAGACAAAGATTTTCTA---TCTC-G 104 ||||||| ||||||||||||||||| ||||||| ||||| | |||| Sbjct 260 TTTCGTGTCCCTCCTCCTCCTCCTCCTCCTCACTAAGACAAATATTTT-GAGGTTCTCTT 318 Query 105 T-TCGTTTGTGTGATCTG--T------C-----G----G-AGATCGTGATCGGATTGATT 145 | |||||||||||||||| | | | | |||||||||||||||||||| Sbjct 319 TCTCGTTTGTGTGATCTGTCTGACAAGCTAGAAGAATCGTAGATCGTGATCGGATTGATT 378 Query 146 TGAT-A--ATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 202 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 TGATAATTATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 438 Query 203 CGGAGGCTGAGATTAAGAAGGCTTATTACATCAAGGCACGCCAAGTACATCCAGATAAAA 262 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 439 CGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATCCAGATAAAA 498 Query 263 ACCCTAATGATCCTCAAGCTGCTCATAATTTCCAGGTGTTGGGAGAGGCCTACCAAGTGT 322 |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 499 ACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCTACCAAGTGC 558 Query 323 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATGTGGGAAGTCAGGGATTTCAACTG 382 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 559 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGATTTCAACTG 618 Query 383 AGATCATTGATCCCGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTTTTTGAAGAAT 442 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 619 AGATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTCTTTGAAGAAT 678 Query 443 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 679 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 738 Query 503 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 739 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 798 Query 563 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 858 Query 623 TTAGCAATGGTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 682 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 CTAGCAATGCTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 918 Query 683 TGAACACAATTGGATATATATATGTAAGACAAGCGGCGAAAGAGCTTGGGAAGAAAGCTA 742 |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 919 TGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGCTTGGGAAGAAAGCTA 978 Query 743 TTTATCTCGGTGTACCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 802 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 TTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 1038 Query 803 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 1098 Query 863 GGCAGCTAAGTGTTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 922 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1099 GGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 1158 Query 923 ATAAGAAAGTGATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAGAGCACTA 982 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1159 ATAAGAAAGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAAAGCACTA 1218 Query 983 TCTCCCGTGTTTGTGAGCTGGTACTTCAAGATCCCACTGCCAAGAAAGAGGAGCTTCGTG 1042 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1219 TCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCCACTGCCAAGAGAGAGGAGCTTCGTG 1278 Query 1043 CAAGGGCCAAGGGGTTAAAAACTCTAGGGAA-GATCTTCCAGAAGAACAAGATAGCCAGT 1101 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1279 CAAGGGCCAAGGGGTTAAAAACTCT-GGGAAAGATCTTCCAGAAGAACAAGATAGCCAGT 1337 Query 1102 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGACATGGTCAAGAACAT 1161 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1338 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGAAATGGTCAAGAACAT 1397 Query 1162 GATCATGCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACATTTGGACCTCAG 1221 |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1398 GATCATTCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACCGTTGGACCTCAG 1457 Score = 377 bits (204), Expect = 1e-103 Identities = 288/324 (89%), Gaps = 23/324 (7%) Strand=Plus/Plus Query 1222 GAACCGCAAAGCCCTTATGTGGAAACACCGAAACTTGGAGAAGAGCAATTCAACCAATAC 1281 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||| Sbjct 1485 GAACCGCAAAGCCCTTATGTGGAAGCACCGAAACTTGGAGAAGAGCAAATCAACTATTAC 1544 Query 1282 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1545 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1604 Query 1342 A-T------T---C---------A--TTTTCCCTTTTGTGCTATATAATATAAGTCTTTA 1380 | | | | | |||||| |||| |||||||||||||||||||||| Sbjct 1605 ATTCACAGATGAACGAAAAGGTTATTTTTTCCTTTTTTTGCTATATAATATAAGTCTTTA 1664 Query 1381 TGCATA-TTGATATATTTGCAGGCGGTGGTATTACAATTATGTAATTTTTATTATTTTTA 1439 |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||| Sbjct 1665 TGCATATTTGATATATTTGCAGGCGTTGGTATTACCATTATGTAATTTTTATTATTGTTA 1724 Query 1440 GAAGAAGAAATTATTGGATCATTGGaaaaaaaCACATGAAATCTCATCTTAGACAATGTA 1499 |||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||| Sbjct 1725 GAAGAAGAAATTATTGGATC-TTTGAAAAAAGCACATGTTATCTCATCTTAGACAATGTA 1783 Query 1500 TAATGTTTTTATTCTATTTATATA 1523 |||||||||||||||||||||||| Sbjct 1784 TAATGTTTTTATTCTATTTATATA 1807 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75150215865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5