BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472404 Length=1949 Score E Sequences producing significant alignments: (Bits) Value AT1G21660.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 2819 0.0 > AT1G21660.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:7605699-7609065 FORWARD LENGTH=2027 Length=2027 Score = 2819 bits (1526), Expect = 0.0 Identities = 1760/1869 (94%), Gaps = 32/1869 (2%) Strand=Plus/Plus Query 96 GATC-GATCTGGGAAATCGTGAAA-TCGTTTGTGttttttttttGCTCGATTAATCGGAG 153 |||| ||| |||| ||||||||| ||||||||| |||| ||||||||||| ||||| Sbjct 169 GATCTGAT-TGGGGGATCGTGAAATTCGTTTGTG----TTTTCTGCTCGATTAACCGGAG 223 Query 154 AAATGGACGAGTTTGGTGTTCTTACGGAGCGTTATGGGATTAAACCACAAGGTAAATCTG 213 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 224 AAATGGACGAGTTTGGTGTTCTAACGGAGCGTTATGGGATTAAGCCACAAGGTAAATCTG 283 Query 214 CTCCGATGGCTGCTTCTAAGCGTAACCCTAACAACAATGGTCAGAGCTGGAATTTCGGTA 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 CTCCGATGGCTGCTTCTAAGCGTAACCCTAACAACAATGGTCAGAGCTGGAATTTCGGTA 343 Query 274 CAGG---CTCTGGTCTAAATGCAAAGTCGACGTCTTTTTCTTCGAATAGCTCTTGGAATA 330 |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 344 CAGGCTCCTCTGGTTTAAATGCAAAGTCGACGTCTTTTTCTTCCAATAGCTCTTGGAATA 403 Query 331 AGGAATCTACTAATGGGTCTTTGTATGATGGTGACGACATTTTCTTTCCGGCTAACTCTA 390 |||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 404 AGGATTCTACTAATGGGTCTTTGTTTGATGGTGACGATATTTTCTTTCCGGCTAACTCTA 463 Query 391 CTAATAGGAATGG-TTCGAATGATTTCGATGTTTTTTCTGGGTTGAAAAAATCATCATCT 449 |||||||||| || |||||||||||| ||||||||| |||||||||| ||||| |||||| Sbjct 464 CTAATAGGAA-GGTTTCGAATGATTTTGATGTTTTTGCTGGGTTGAACAAATCTTCATCT 522 Query 450 TCCGGTGATAATAGCAAGTCGTCTTTGAACGATGATTTGTTGTTCTCTAATTTTGGGAAT 509 |||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||| Sbjct 523 TCCGGTGATAATAGCAAGTCTTCATTGAACGATGATTTGTTCTTCTCCAATTTTGGGAAT 582 Query 510 TTGGGAAAGA-AA--ACTTC-TGATGATGATGATTTGTTTGGTGGTGTTATGCCTGGGTC 565 ||| |||| || |||| | | | |||||| ||||||||||||||||| |||||||| Sbjct 583 CCGGGGAAGACAACTCCTTCTTCA-GCTGATGACTTGTTTGGTGGTGTTATTCCTGGGTC 641 Query 566 TAAAACCTCCGCTAGTGTTAAGAATGATGATTTGTTTGGGTCCTTCTCTTCATCGGAAAA 625 ||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 642 TAAAAGCTCTGATAGTGTTAAGAATGATGATTTGTTTGGGTCATTCTCTTCATCGGAGAA 701 Query 626 GCAATATGCTGCTGCGGTCGATGATTTGTTGGG---AGGGAAGAATGAAGCTGGTTATGA 682 |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 702 GCAATATGCTGCTGCGGTTGATGATTTGTTGGGTTTGGGGAAGAATGAAGCTGGTTATGA 761 Query 683 TGGATTGATACCTGGTTTTGGTGCAAGTACTCAGACGACTATCAGCAAGACTGCTCCGTC 742 ||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||| Sbjct 762 TGGATTGATACCTGGTTTTGGTGGAAGTACTCAGACGACTAGCAGCAAGACTACACCGTC 821 Query 743 GAACTTTGATGCTACTGATCCTTTTGTGGTCCTAGAATCAACCACTTCTACTGATCTGTT 802 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 822 GAACTTTGATGCTACTGATCCTTTTGTGGTCCTAGAATCAACCACTTCTACTGGTCTGTT 881 Query 803 CGTGGATCCTCTTGAAGAATTTGCTGCTTCAGTCATTTCTCAGGGGaaaaaaaCATCAAA 862 |||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||||| Sbjct 882 CGTGGATCCTCTTGAAGAATTTGCTGCTACAGTCAGCTCTCAGGGGATAAAACCATCAAA 941 Query 863 TACTTCACATACTTCTACAAAACTCAAGCCTCCGCCTAAACCAACCCAAAAAGTGAACAG 922 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 942 TACTTCACATACTTCTACAAAACTCAAGCCTCCGCCTAAACCAACACAAAAAGTGAACAG 1001 Query 923 AGGTAAGAGTGTAGAAATGTCTTCAATAGACGAACTTGAAGACTTTGCCATGGGAACAAT 982 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || || Sbjct 1002 AGGTAAGAGTGTAGGAATGTCTTCAATAGACGAACTTGAAGACTTTGCCATGGGTACTAT 1061 Query 983 GCGACGTAGTGCCTCTGCTTCTGACACTGCTAGTAAATATAGAGAAGCTGAAGATACTGG 1042 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1062 GCGACGTAGTGCCTCCGCTTCTGACACTGCTAGTAAATATAGAGAAGCTGAAGATGCTGC 1121 Query 1043 AACAAAGAATAAACAGTTTGGTGTAGATGACCTTGACTCCTTTTTTAGCGCTGGACCGAG 1102 ||| |||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1122 AACGAAGAATAAACAGTTTGGTGTAGATGACCTTGACTCCTTTTTTAGCGCT----C--G 1175 Query 1103 GTCTAGCAGTGTACCGAAATCACGTACCACAACTGAAACAACTCGCAAGCAAGCGTCCAA 1162 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1176 GTCCAGCAGTGTACCGAAATCACGTACCACTACTGAAACAACTCGCAAGCAAGCGTCCAA 1235 Query 1163 CACGCCAAAAAAGACGCCTAATGGGGTTTCTAAGGCAAAGAAGCCTCCTGCTCCAGCAAA 1222 | | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1236 CGCACCAAAAAAGACCCCTAATGGGGTTTCTAATGCAAAGAAGCCTCCTGCTCCAGCAAA 1295 Query 1223 TCTGGTGGATGACTTTTCTGCACTCTTTGGAGAGGATCCTATATTTAGACAATTTGAGGA 1282 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1296 TCTGGTGGATGACTTTTCTGCACTTTTTGGAGAGGATCCTATATTTAGACAATTTGAGGA 1355 Query 1283 AATCCCAGGGGAAAGCGAAGAACGAAGAAAGGCCAGATGGGATCGTGAACAGAGAACAAA 1342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1356 AATCCCAGGGGAAAGCGAAGAACGAAGAAAGGCCAGATGGGATCGTGAACAGAGAACAAA 1415 Query 1343 GAGCCGTGTGGCACAAGCTGTTGCTGATATGAATAACCGTGATCATCAATCTCGGATTGA 1402 ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1416 GAGTCGTGTGGCTCAAGCTGTAGCTGATATGAATAACCGTGATCATCAATCTCGGATTGA 1475 Query 1403 ACAAGAACAGAGAACTAGGATTTCTGAGACTGTTGATGCTGAGATAAGGCGTTGGGCAAC 1462 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1476 ACAAGAACAGAGAACTAGGATTTCTGAGACTGTTGATACTGAGATAAGGCGTTGGGCAAC 1535 Query 1463 TGGTAAAGAAGGAAACATGCGTGCGCTGTTATCTTCCTTGCAAATCGTACTCTGGCCCGG 1522 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1536 TGGAAAAGAAGGAAACATGCGTGCGCTGTTATCTTCCTTGCACATCGTACTCTGGCCCGG 1595 Query 1523 ATGTGGTTGGGAGACTGTTTCTC-TAACAGATTTGATCACTTCGTCAGCAGTCAAGAAAG 1581 ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1596 ATGTGGTTGGGAGGCTGTTTC-CATAACAGATTTGATCACTTCGTCAGCAGTCAAGAAAG 1654 Query 1582 TCTATAGAAAGGCAACGCTGTATGTCCATCCCGATAAAGTTCAGCAGAAAGGAGCCACCC 1641 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1655 TCTATAGAAAGGCAACACTGTATGTCCATCCCGATAAAGTTCAGCAGAAAGGAGCCACCC 1714 Query 1642 TTGAACAAAAGTATATTGCTGAAAAGGTTTTTGACATTTTGAAGGAAGCTTGGAACAAGT 1701 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1715 TTGAACAAAAGTATATCGCCGAAAAGGTTTTTGACATTTTGAAGGAAGCTTGGAACAAGT 1774 Query 1702 TCAACAAGGAGGAGCTCTCTTAAGCCCATATGCTGTGGATATAGTTGCTTTCTGTACAAC 1761 ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 1775 TCAACAAGGAGGAGCTCTCTTAAGCCCATATACTGTGAATATAGTTGCTCTCTGTACAAC 1834 Query 1762 TATAATTCGTCTGTGAGTTTCCTCGAGTCTTTTCTTGTTTTTTATCTTCTTGTCTCTGAT 1821 |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct 1835 TATAATTCGTCTGTGAGTTTCCTCGAGTCTTTTCTTGTTTTTAATCTTCTTGTTTATGAT 1894 Query 1822 TTTT-CCTTTGACGGTAACTTGTCATCATTCTGTACACCCAACAACAACAAAAATCCATG 1880 |||| |||||||| ||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 1895 TTTTTCCTTTGACCGTAACTTGTCATCTTTCTGTACACCCAACAACAA-AAA--TCCATG 1951 Query 1881 GGGGATATTGTATAGCCCCAAAAACCGAAATAGAGTTTCTTTTTATAAGATATATATTGA 1940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1952 GGGGATATTGTATAGCCCCAAAAACCGAAATAGAGTTTCTTTTTATAAGATATATATTGA 2011 Query 1941 ATGTTTTTA 1949 ||||||||| Sbjct 2012 ATGTTTTTA 2020 Score = 67.6 bits (36), Expect = 4e-10 Identities = 39/40 (98%), Gaps = 1/40 (3%) Strand=Plus/Plus Query 1 ACACCGTCGGTGCCCTCACGGATCAATTTCTA-AGAGAGA 39 |||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ACACCGTCGGTGCCCTCACGGATCAATTTCTAGAGAGAGA 40 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96535648035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5