BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472418 Length=1203 Score E Sequences producing significant alignments: (Bits) Value AT1G21790.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1622 0.0 > AT1G21790.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:7654184-7655883 FORWARD LENGTH=1232 Length=1232 Score = 1622 bits (878), Expect = 0.0 Identities = 1053/1135 (93%), Gaps = 22/1135 (2%) Strand=Plus/Plus Query 1 ATCGACCGACACGTGTCCGTTGCGTCCCAAAGAGGCTCTTTTAAGCGTAAAAACGTGAAG 60 |||||||||||||||||||||||||||| || | | | |||| | | ||||||||| Sbjct 1 ATCGACCGACACGTGTCCGTTGCGTCCC-AA-A-G-----TAAAGC-TTATAACGTGAAG 51 Query 61 GCATTTGTATCGTCTCTTCCGCCAAAATTGGAAATGGATATCGGAGCTTGAGCTAAGAAC 120 ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 52 GCATTTGTATCGTCTCTTCCGCCAAAATTGGAAATGGATATCGAAGTTTGAGCTAAG--- 108 Query 121 AATCCAATTTAGGGTTATCTTTGCCGGATTCTCAAGCAATCTCCGAGAGAAAGAGGAGGG 180 ||||||||||||||||| |||||||||||||||||||||||||||||||| | | | | | Sbjct 109 AATCCAATTTAGGGTTAACTTTGCCGGATTCTCAAGCAATCTCCGAGAGAGACA-GTGAG 167 Query 181 GTTTCGATGGCGAGGAACGGGATTGGGAACACGGGAGTGAAGAAGAATGGGGCTGGTG-A 239 |||||||||||||||||||||||||||| | |||| |||||||||||||||||| | | Sbjct 168 GTTTCGATGGCGAGGAACGGGATTGGGAGTTCAGGAGGGAAGAAGAATGGGGCTGG-GCA 226 Query 240 GTTTTTCCTGGCGACGCTGCTTCTATGGCTGGGCTCCGTCGTGTTTGAGATTGCTTTCAA 299 ||||||| | |||||||||||||| ||||| | ||||||||||||||||||||||||||| Sbjct 227 GTTTTTCTTAGCGACGCTGCTTCTTTGGCTTGTCTCCGTCGTGTTTGAGATTGCTTTCAA 286 Query 300 TCTCCGGACGGAGCTTCTATGGGTGATTTGCGGTGGATGTTTCTTTCAATTGATGAATTG 359 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 287 TCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGATGCTTCTTTCAATTGATGAATTG 346 Query 360 GGTGGTTCGTTCTTGGATTTCTCGTGACCCTCTCTTTGTTAATACCTCTGTCTCGCTATT 419 ||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||| || Sbjct 347 GGTTGTTCGTTCATGGATTTCTCGTGACCCTATATTTGTTAATACCTCTGTCTCGCTTTT 406 Query 420 GCACTCAATCATCACCTCCGCATCAGTGGTTTTCATTCTGCTCAATCAATGCTTAGCCAA 479 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 407 GCACTCAATCATCACCTCCGCATCAGTGGTTTTCATACTTCTCAATCAATGCTTAGCCAA 466 Query 480 AGGTTTAGACGAGATGTTCGATCATTCTGAGTTGGTTGGTGGTACTTGGAAATGGGCATA 539 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 467 AGGTTTAGACGAGATGTTTGATCATTCTGAGTTGGTTGGTGGGACTTGGAAATGGGCATA 526 Query 540 TCCAGCTTTGTGTTTCTCATGCGGATACTTTGCATATGACCAGTGGGATATGCTTCAGTA 599 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 527 TCCAGCTTTGTGTTTCTCATGCGGCTACTTTGCATATGACCAGTGGGATATGCTTCAGTA 586 Query 600 CCGATTATACAGCGGGTTAATACCTTCCATTCTGGTTCACCATCTAGTCCTCCTTGTTTG 659 ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 587 CCGGTTATACAGCGGCTTAATACCTTCTATTCTTGTTCACCATCTAGTCCTCCTTGTTTG 646 Query 660 CTTCACATTGGCTCTATACCGAAATGTAACCATCAACTACCTGATTCTTACTCTCATTTG 719 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 647 CTTCACATTGGCACTATACCGAAATGTAACCATCAACTACCTTATTCTTACTCTCATCTG 706 Query 720 TGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGAGAATGGCGGGAATCCGAGA 779 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 707 TGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGAGAATGGCAGGAATCCGAGA 766 Query 780 CAGCAACACAGCATTGGTGAAACTGGAGTGGGTGCTAAACTGGACAGCCTTTGTGTTTGC 839 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 767 CAGCAACACAGCATTGGTGAAACTGGAGTGGGTATTAAACTGGACAGCCTTTGTGTTTGC 826 Query 840 GAGGTGCATTCCTCACATTCTCATCACTATCAAGCTGATCAAAGACGCACACAAGTTTGG 899 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 GAGATGCATTCCTCACATTCTCATCACTATCAAGCTGATCAAAGACGCACACAAGTTTGG 886 Query 900 GAAAGGTGTGGAGTTACCGCTCGCTTTGTCTGGTATGGCGGGAATGAACATCCTCAATGT 959 |||||| ||||||||||| |||||| ||||||||||||| ||||||||||| || ||||| Sbjct 887 GAAAGGCGTGGAGTTACCACTCGCTCTGTCTGGTATGGCAGGAATGAACATTCTTAATGT 946 Query 960 CGGCCTCGGATTGGATCTGTTTCATGCTTTCAGAAGAGAGAGAAGCAACAGAAGAAATCA 1019 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 947 TGGCCTCGGGTTGGATCTGTTTCATGCTTTCAGAAGAGAGAGAAGCCACAGAAGAAACCA 1006 Query 1020 AGAGAACAACAACCATCACGACCATGGAGAATAATAGCTAATTTAGAAACCATCCCATTA 1079 ||||||| ||||| |||||||||||||||||||||||||||||||| | |||| |||| Sbjct 1007 AGAGAACGGCAACCTTCACGACCATGGAGAATAATAGCTAATTTAGAGGCAATCC-ATTA 1065 Query 1080 CCGA-TGGCTATGGTTTGTTGT---ATGACTACTACCCACTCATCTCTTGTTTAT 1130 |||| | |||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1066 CCGAAT--CTATGGTTTGTTGTTGTATGAATACTACCCACTCATCTCTTGTTTAT 1118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59086041465 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5