BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472436
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase 6... 3467 0.0
> AT1G22020.1 | Symbols: SHM6 | serine hydroxymethyltransferase
6 | chr1:7754321-7757383 FORWARD LENGTH=2374
Length=2374
Score = 3467 bits (1877), Expect = 0.0
Identities = 2234/2393 (93%), Gaps = 77/2393 (3%)
Strand=Plus/Plus
Query 1 AATTCTCTTCTTCTCATCCATAGCTTCCGAC----GAG-AGAAG--AAGCAAAATTCGAT 53
||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1 AATTCTCTTCTTCTCATCCATAGCTTCCGACGAGAGAGAAGAAGCAAAGCAAAATTCGAT 60
Query 54 TGCTCTGGGTTTTTGATCTTTTAGGGTTTCTGTG-AAATTTGGATGGAAACTTCAACCTT 112
||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||
Sbjct 61 CGCTCTGGGTTTTTGATCTTTTAGGGTTTCTG-GCAAATTTGGATGGAAACCTCAACTTT 119
Query 113 ATCTAAAGATAATCATAAAGGAAGAAGCTTTC---ATTGTTTCCATTGTAT-CAGCTCCT 168
||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 120 ATCCAAAGATAATCATAAAGGAAGAAGCTTTCGTTGTTGTTTCCATTGT-TGCAGCTCCT 178
Query 169 TCAAAAACTCTTGTCTCTATTGCTTTCACAGCTAAAGAA-T-TC---T---TC----TCG 216
||||||||||||||||||||||||||||||||| ||||| | || | || |||
Sbjct 179 TCAAAAACTCTTGTCTCTATTGCTTTCACAGCT-AAGAATTCTCGATTCCATCGTTGTCG 237
Query 217 TTTTCGATTTTG-GGGAATTGGGTTCTTCTAGGTTTAGGTTATGGATCGTATTGCTCAAT 275
|||||||||||| | |||||||||||||||| ||| ||||||||| ||||| |||||||
Sbjct 238 TTTTCGATTTTGACGAAATTGGGTTCTTCTAGATTTTGGTTATGGACCGTATAGCTCAAT 297
Query 276 CAGATCTCTCTTTAGGATTCGGTAGCTCCCACGC--T---T-TACCTCATCCTCCGAGAA 329
|||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||
Sbjct 298 CAGATCTCTCTTTAGGATTCGGTAGCTCCCACGCTTTACCTCTACCTCATCCTCCTAGAA 357
Query 330 TCCCAATTGCTGATGACTCAATCACGCTTCAGATTGATTCTAGCTTCCGTCCTTCGTCTA 389
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 TCCCAATCGCTGATGACTCAATCACGCTTCAGATTGATTCCAGCTTCCGTCCTTCGTCTA 417
Query 390 ATCCTATGCCTCCTGTTCCGCTTCAGTTGCTTGAGCAGAGATTCGATGTTACCGGATCGT 449
||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |
Sbjct 418 ATCCTATGCCTCCTGTTCCTCTTCAGTTACTTGAGCAGAGATTCGATGTCACCGGATCCT 477
Query 450 GTAGCCGAGTCGTTGAGGAAGACgatgatgttgttggtgattatgatgaagatgat-gat 508
|||||||||| |||||||| |||||||| |||||||||||| ||||||| |||||| |
Sbjct 478 GTAGCCGAGTTGTTGAGGAGGACGATGAGGTTGTTGGTGATAATGATGATGATGATCAAA 537
Query 509 gatgatCA-AAG-GCAATTTATTCTCTTGGGTCATCCTATGAAGTTGAAACGATGTAGAG 566
|| || | | | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 GA-GA--AGAGGAGCAATTTATTCTCTTGGGTCATCCTATGAAGTTGAAACGAGGTAGAG 594
Query 567 GTGGGAATTCATATTCAATGTCATCATCAA------GTAAGAGATTTGTAGTTGATTCAG 620
|||||||||| |||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 595 GTGGGAATTCGTATTCATTGGCATCATCAAGTCCTTGTAAGAGATTTGTAGTTGATTCAG 654
Query 621 GGATTGAAGGTAGACGAGCCGCCGTTAGAGCTTGGGGTAATCAGTCGATTGAAGAAGCTG 680
|||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 655 GGATTGAAAGTAGGCGAGCTGTTGTTAGAGCTTGGGGTAATCAGTCGATTGAAGAAGCTG 714
Query 681 ATCCTGAGATTCATGAGTTTATGGAAAAGGAAAAGCAGAGACAGTTTAGAGGTATTGAGC 740
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 715 ATCCTGAGATTCATGAGTTTATGGAAAAGGAGAAGCAGAGACAATTTAGAGGTATTGAGC 774
Query 741 TTATAGCTTCTGAGAATTTCGTGTGTAGAGCGGTGATGGAAGCTTTAGGAAGTCATTTGA 800
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 775 TTATAGCTTCTGAGAATTTCGTGTGTAGAGCTGTGATGGAAGCTTTAGGAAGTCATTTGA 834
Query 801 CTAATAAGTACTCTGAAGGAATGCCTGGAGCTAGATACTACATGGGGAATCAGTATATTG 860
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 835 CTAATAAGTACTCTGAAGGAATGCCTGGAGCTAGATACTATACGGGGAATCAGTATATTG 894
Query 861 ATCAGATTGAGATTCTTTGCCAAGAGCGTGCGCTTGCAGCTTTTGGACTTCAA-CATGAG 919
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 895 ATCAGATTGAGATTCTTTGCCAAGAGCGTGCGCTTGCAGCTTTTGGAC-TAAATCATGAG 953
Query 920 AAATGGGGAGTTAATGTGCAGCCTTATTCGTGCACTTCCGCCAATTTCGCTGTTTTCGCT 979
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 954 AAATGGGGAGTTAATGTGCAGCCTTATTCGTGCACTTCTGCCAATTTCGCTGTTTTCACT 1013
Query 980 GGTCTTTTGATGCCTGGTGAACGAATTATGGGATTGGATTCTCCCTCAGGTGGTCATATG 1039
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GGTCTTTTGATGCCCGGTGAACGAATTATGGGATTGGATTCTCCCTCAGGTGGTCATATG 1073
Query 1040 AGTCATGGGTATTACACGCCAGGTGGAAAGAAAGTCTCTGGTGCGTCTATATTCTTTGAG 1099
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1074 AGTCATGGGTATTATACACCAGGTGGGAAGAAAGTCTCTGGTGCGTCTATATTCTTTGAG 1133
Query 1100 AGTTTTCCGTATAAGGTTGATCCTCGTACAGGGTATATTGATTATGATAAGCTTGAGGAA 1159
|| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1134 AGCTTTCCATATAAGGTTGACCCTCGTACAGGGTATATTGATTACGATAAGCTTGAGGAA 1193
Query 1160 AAGGCGCTTGACTATCGTCCCAAGATACTTATTTGTGGTGGGAGTTCATATCCGAGAGAC 1219
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1194 AAGGCGCTTGACTATCGTCCTAAGATACTTATTTGTGGTGGGAGTTCATATCCGAGGGAC 1253
Query 1220 TGGGAATTCCCTAGGTTTAGGCATATTGCAGACAAATGTGGAGCTGTTTTGATGTTTGAC 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGGGAATTCCCTAGGTTTAGGCATATTGCAGACAAATGTGGAGCTGTTTTGATGTTTGAC 1313
Query 1280 ATGGCACAGATTAGCGGTCTTGTGGCTGCCAAGGAAAGTCCAAATCCATTCGATTATTGC 1339
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATGGCACAGATTAGTGGTCTTGTCGCTGCCAAGGAAAGTCCAAATCCATTCGATTATTGC 1373
Query 1340 GATATTGTTACCTCGACAACACACAAGTCTCTCCGTGGACCTAGGGGCGGCATCATATTT 1399
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1374 GATATTGTTACCTCAACAACACACAAGTCTCTCCGTGGCCCTAGGGGCGGCATCATATTT 1433
Query 1400 TACAGGAGAGGCTTGAAGCCCAAGAAGCAAAGCATGAATCTTAATCACTGTGAGAGCAAT 1459
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1434 TACAAGAGAGGCTTGAAGCCCAAGAAGCAAAGCATAAATCTTAATCACTGTGAGAGCAAT 1493
Query 1460 ATCCAGTATGATTTTGAAGAAAAAATCAACTTTTCTGTCTTTCCATCGTTGCAAGGCGGG 1519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1494 ATCCAGTATGATTTTGAAGAAAAAATCAACTTTTCTGTCTTTCCATCGTTGCAAGGGGGG 1553
Query 1520 CCTCACAATAACCATATAGCTGCTCTAGCCATTGCCCTCAAGCAGGCCGCTTCACCAGAG 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CCTCACAATAACCATATAGCTGCTCTAGCCATTGCCCTCAAGCAGGCCGCTTCACCAGAG 1613
Query 1580 TACAAGCTTTACATGCGACAAGTaaaaaaaaaTGCCAAGGCTTTAGCATCTGCTTTGATA 1639
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 1614 TACAAGCTTTACATGCGACAGGTCAAAAAAAATGCTAAGGCTTTAGCATCTGCTTTGATA 1673
Query 1640 AGTAGAAAGTGCAAGTTGATAACAGGTGGCACCGATAATCATTTGCTTCTCTGGGATCTG 1699
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AGCAGAAAGTGCAAGCTGATAACAGGTGGCACCGATAATCATTTGCTTCTCTGGGATCTG 1733
Query 1700 ACTCCTTTGGGCTTGACAGGTAAGGTGTATGAGAAAGTTTGCGAGATGTGCCATATCACG 1759
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ACTCCTTTGGGCTTGACAGGCAAGGTGTATGAGAAAGTTTGCGAGATGTGCCATATCACG 1793
Query 1760 GTCAACAAAGTCGCCATTTTCAGCGAAAATGGTGTTATTTCCCCTGGAGGAGTGAGAATA 1819
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1794 GTCAACAAAGTGGCCATTTTCAGCGAAAACGGTGTTATTTCCCCTGGAGGAGTGAGAATA 1853
Query 1820 GGCAGTCCGGCTATGACCTCAAGAGGTTGTTTAGAACCAGAATTTGAGACAATGGCTGAG 1879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 GGCAGTCCGGCTATGACCTCAAGAGGTTGTTTAGAACCAGAATTTGAGACAATGGCTGAT 1913
Query 1880 TTTCTATATAGAGCTGCTCAGATAGCTAGTGCTGCACAAAGGGAACACGGGAAGTTGCAA 1939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TTTCTATATAGAGCTGCTCAGATAGCTAGTGCTGCACAAAGGGAACACGGGAAGTTGCAA 1973
Query 1940 AAGGAACCGCTCAAAAGCATCTATCACTGTAAAGAGATTGCAGATCTTCGGAACCAAGTT 1999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 AAGGAACCGCTCAAAAGCATCTATCACTGTAAAGAGATTGCAGATCTTCGGAACCAAGTC 2033
Query 2000 GAAGCTTTTGCTACTCAGTTTGCAATGCCTGCCTTTGACATGTGAGTCAGCCTGAAGAAC 2059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 GAAGCTTTTGCTACTCAGTTTGCAATGCCTGCCTTTGACATGTGAGTCAGCCTGAAGAAC 2093
Query 2060 GAGACCAGCTCAAtctctctctctctcATTTTTTGTTGCCATGGTAATCTAAATCCATAC 2119
|||||||||||||||||||| || |||||||||||||||||||||| | ||||
Sbjct 2094 GAGACCAGCTCAATCTCTCT-TC----ATTTTTTGTTGCCATGGTAATC-----C-ATAC 2142
Query 2120 ACCCATTTCTCTATTTTACAATGTCAACATTCCCTAAATT----G----------GGGGA 2165
|||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 2143 ACCCATTTCTCTGTTTTACAATGTCAACATTCCCTAAATTCTTAGTTTAATATTTGGGGG 2202
Query 2166 -AAAACAAACTTTTGTGAGTTGCTATGGTCGTTTATTCTTCAATGCTTGTGTACATAGAC 2224
||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2203 CAAAACAAACTTGTGTGTGTTTCTATGGTCGTTTATTCTTCAATGCGTGTGTACATAGAC 2262
Query 2225 ATTGGGGCTGTGTTGGGTATTAGTGTATCCCTTTGTGTTCTTTTAAAATGGTAATAATAA 2284
|||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2263 ATTGGG-CTGTGTTGGGTATTAGTGTATCCCTCTGTGTTCTTTTAGAATGGTAATAATAA 2321
Query 2285 TGCAGTTGAAATTT-TTTGA-TAGAAAAGGGAATAATATTCTTTCAAGATGTT 2335
|||||||||||||| ||| ||||||||||||| |||| |||||||||||||
Sbjct 2322 TGCAGTTGAAATTTATTTTTCTAGAAAAGGGAATGATATGCTTTCAAGATGTT 2374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115913058405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5