BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472441
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22070.1 | Symbols: TGA3 | TGA1A-related gene 3 | chr1:77893... 2599 0.0
AT1G77920.1 | Symbols: | bZIP transcription factor family prot... 159 6e-38
> AT1G22070.1 | Symbols: TGA3 | TGA1A-related gene 3 | chr1:7789348-7792114
FORWARD LENGTH=1751
Length=1751
Score = 2599 bits (1407), Expect = 0.0
Identities = 1650/1763 (94%), Gaps = 33/1763 (2%)
Strand=Plus/Plus
Query 1 TGATGCTTTTGTCGTTTCATCGTTCGTTTACTTCAACTTGCTTATTATTCTACGCTCATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGATGCTTTTGTCGTTTCATCGTTCGTTTACTTCAACTTGCTTATTATTCTACGCTCATG 60
Query 61 GACTAATCAAAGCAACGAAG-aaaaaagcaaa-caac-acaaaaaaatatat-tagaaaa 116
||||||||||||| | || | |||||| ||| |||| || | ||||||||| || |||
Sbjct 61 GACTAATCAAAGCCATGAGGAAAAAAAAAAAAGCAACAAC-ACAAAATATATGTA-TAAA 118
Query 117 aaaaaaaaTATCTCTGC----TTTTTTCAATGATGGATACGCTTCACCTCTAAGTTTTGA 172
|||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 119 AAAATAAATATCTCTGCTTTTTTTTTTCAATGATGGGTACGCTTCACCTCTAAGTTTTGA 178
Query 173 CCAAAG-TTTTCTTCA-TT-TCTCTTCTCTCTTGTGATCACCGTTTGATCGGAATATTCC 229
|||||| ||||||||| || |||||||||||||||| |||||||||||||||||||||||
Sbjct 179 CCAAAGTTTTTCTTCATTTCTCTCTTCTCTCTTGTGGTCACCGTTTGATCGGAATATTCC 238
Query 230 -TTTAGAATGCCAAGATTCATTCTTCATCTCTCGAGCTTGTGATGAATTTCTTCTCTGCT 288
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 239 TTTTAGAATGCCAAGATTCATTCTTCATCTCTCGAGCTCCTCATGAATTTCTTCTCTGCT 298
Query 289 TGTCAATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACA 348
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TATCAATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACA 358
Query 349 TGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAATCCTTTCAAATCAGATA 408
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 TGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAGTCCTTTCAAATCAGATA 418
Query 409 TCAACAATAATCTTAGTAGTAATCAGAATAACAATCAGGGTTCTTCAACAACTCTTGAGG 468
|||||||| | ||| |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 419 TCAACAAT-A--TTACTAGTAATCAGAATAACAATCAGAGTTCTTCAACAACACTTGAGG 475
Query 469 TGGATGCTAGACCAGAACCAGATGATAACAATAGAGAGAATTATACTTCTGTGTATAATA 528
| ||||||||||||||| |||||||||||||||||| |||||||||||||||| | |||
Sbjct 476 TTGATGCTAGACCAGAAGCAGATGATAACAATAGAGTGAATTATACTTCTGTG--T-ATA 532
Query 529 ATAACTCTGTTGAAGCAGAACCTTCGAGTAATAATGATCACGACGAAGAACGGATCAATG 588
|||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 533 ATAACTCTCTTGAAGCAGAACCGTCGAGTAATAATGATCAGGACGAAGACCGGATCAATG 592
Query 589 ATAAGATGAAACGGCGTTTGGCTCAGAACAGAGAAGCTGCTCGCAAAAGTCGTTTGAGAA 648
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 593 ATAAGATGAAACGGCGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAA 652
Query 649 AGAAGGCCCATGTGCAACAGTTAGAAGAAAGTCGGTTAAAGTTGTCACAGCTCGAGCAGG 708
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 653 AGAAGGCCCATGTTCAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGCTCGAGCAGG 712
Query 709 AACTTGTTAGAGCTAGGCAACAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATC 768
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AACTTGTAAGAGCTAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATC 772
Query 769 TAGGACCAGCTGGGAACATGAACTCAGGTATTGCTGCATTTGAGATGGAATACACACACT 828
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TAGGACCAGCTGGGAATATGAACTCAGGTATTGCTGCATTTGAGATGGAATACACACACT 832
Query 829 GGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAG 892
Query 889 GTGACATTGAGCTCAAAATGCTGGTAGATACTTGCTTGAACCACTACGCAAATCTCTTCC 948
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 893 GTGACATTGAGCTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCC 952
Query 949 GCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAATGTGGCGAA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAATGTGGCGAA 1012
Query 1009 CTTCAACTGAACGCTTCTTCCAGTGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATG 1068
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTTCAACTGAACGCTTCTTCCAATGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATG 1072
Query 1069 TTGTGATGCCATACGTTGAGCCCTTAACCGATCAGCAACTCTTGGCGGTGCGTAACCTCC 1128
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 1073 TTGTGATGCCATACGTTGAGCCCTTAACCGATCAGCAACTGTTGGAGGTGCGTAACCTGC 1132
Query 1129 AACAATCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGG 1188
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AACAGTCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGG 1192
Query 1189 GTTTGGTCGAAAGCATAGCATTTCAGATAGAAGTTATCGAGTCTGCGAATCACGGGGTTC 1248
|||||||||||||||||||| |||||||| ||||| | ||||||| ||||||||||| ||
Sbjct 1193 GTTTGGTCGAAAGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTC 1252
Query 1249 AAATGGCTTCGGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACCAGGCGGATC 1308
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CAATGGCTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACCAGGCGGATC 1312
Query 1309 ATCTGAGACAGCAGACTCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTC 1368
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 ATCTGAGACAACAGACCCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTC 1372
Query 1369 GAGGCTTGCTCGCTCTAGGAGAATACTTCCACAGGCTGCGTGCTCTTAGTTCTCTCTGGG 1428
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGGGTTGCTCGCTCTAGGAGAATACTTCCACAGGCTGCGTGCTCTTAGTTCTCTCTGGG 1432
Query 1429 CAGCTCGTCCACGAGAACACACTTGATAAGTTAGGAGGCAAACAAAACAAAGAGAAAGAA 1488
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1433 CAGCTCGTCCACGAGAACACACTTGACAAGTTAGGAGGCAAACAAAACAAAGAGAAAGAA 1492
Query 1489 GCACAAGGCAGATGATGTTACCTATAGGGACTTTCAGAAAGTGTTTGGA-GATGTAAGCT 1547
|||||||||||||||||||| |||||||||||| | | | | | | | ||| |||
Sbjct 1493 GCACAAGGCAGATGATGTTAGCTATAGGGACTTGCTTTATCTCTCAGAAAG-TGTTGGCT 1551
Query 1548 GATTTTTTCTCTATTAGAGAGCATCATCTTCCTCATTGATGTTTTTGTTTACTTAAAAGG 1607
||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1552 GATATTTTCTCCATTAGAGAGCATCATCTTCCTCATTGATGATTTTGTTTACTTGAAAGG 1611
Query 1608 AATAAGAGATGTGTAAATTTGGGTGGAAAACAA-TAAAGG-TT-GATAAATAAGGCTCTT 1664
|||||||||||||||||||||||||||||||| ||| | || ||| || ||||||||
Sbjct 1612 AATAAGAGATGTGTAAATTTGGGTGGAAAACATGTAATGTCTTTGATGCATTAGGCTCTT 1671
Query 1665 TTATGTTTGTAAAATATATAGGGTTTGTTGTCACTCGTCA--T---ATATGAGAATCTGA 1719
| || || |||||||||||||||||||||||||||| || | |||||| ||| |||
Sbjct 1672 T-AT-TT-GTAAAATATATAGGGTTTGTTGTCACTCATCTCCTCGTATATGAAAATTTGA 1728
Query 1720 GTCCACCATCAAATTTTTTGTCT 1742
| |||| ||||||||||||||||
Sbjct 1729 GCCCACAATCAAATTTTTTGTCT 1751
> AT1G77920.1 | Symbols: | bZIP transcription factor family protein
| chr1:29298243-29300863 FORWARD LENGTH=1826
Length=1826
Score = 159 bits (86), Expect = 6e-38
Identities = 143/170 (84%), Gaps = 5/170 (3%)
Strand=Plus/Plus
Query 547 AACCTTCGAGTAATAATGATCACGACGAAGA--AC-GGA-TCAATGATAAGATGAAACGG 602
||||||| |||||| || |||| || || || | ||| || |||||||||||||||||
Sbjct 693 AACCTTCTAGTAATGATAATCAAGATGATGATGGCAGGATTC-ATGATAAGATGAAACGG 751
Query 603 CGTTTGGCTCAGAACAGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTG 662
||||| || |||||| ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 752 CGTTTAGCGCAGAACCGAGAAGCGGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTT 811
Query 663 CAACAGTTAGAAGAAAGTCGGTTAAAGTTGTCACAGCTCGAGCAGGAACT 712
|| |||||||| ||||| ||||||||||| || ||| | ||||| |||||
Sbjct 812 CAGCAGTTAGAGGAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACT 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86144135220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5