BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472454
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22190.1 | Symbols: | Integrase-type DNA-binding superfamil... 1687 0.0
AT1G78080.1 | Symbols: RAP2.4 | related to AP2 4 | chr1:2936424... 243 5e-63
> AT1G22190.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:7835782-7837288 FORWARD LENGTH=1507
Length=1507
Score = 1687 bits (913), Expect = 0.0
Identities = 1191/1317 (90%), Gaps = 52/1317 (4%)
Strand=Plus/Plus
Query 3 CCAAGCTAATGAGATTAGTGTATCGGTGAGGCTGAGAGTTATTCACTTACaaaaaaaaaa 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 CCAAGCTAATGAGATAAGTGTATCGGTGAGGCTGAGAGTTATTCACTTACAAAAAAAAAA 68
Query 63 aaaacacttgagggcaataaaaaaaaaaaGTTGATATTCTTTCTGATTTTCTCCTGAACT 122
|||| ||||||| | || |||||||||||||||||| ||||||| ||||||||| |||
Sbjct 69 AAAA-ACTTGAGTGTAACCAAAAAAAAAAGTTGATATACTTTCTGGTTTTCTCCTTAAC- 126
Query 123 TTTTATTCTGTGCAAATCCACCCCCCATAGATCTGTTTATTTCCCGCTACTTCGA-TC-- 179
||||||||| | |||||||| ||||| ||||||||||||||||||||||||| || ||
Sbjct 127 TTTTATTCTTTACAAATCCATCCCCCTTAGATCTGTTTATTTCCCGCTACTTTGATTCAT 186
Query 180 --C--------AT-T-TC--T-GT-TAG-A-AAAACCGatttcttggtttgtattttctt 221
| || | || | || ||| | ||||| |||||||||||||||||||||||
Sbjct 187 TTCTGTTAGTAATCTGTCTTTCGTATAGAAGAAAACTGATTTCTTGGTTTGTATTTTCTT 246
Query 222 aaatttatcaatc-ttttttatttctgatcttcttgt-tttttttttCTTTGTAGATTTA 279
||| ||||||| |||||||||| |||||||||||| |||||||||||||||||| |||
Sbjct 247 AAAGAGATCAATCTTTTTTTATTTTTGATCTTCTTGTGTTTTTTTTTCTTTGTAGAATTA 306
Query 280 ATCGTTTGTGAGGGTAttttttt-ATTCCCTCCTCTCAG--ATCTACACAGAGGTAGTTT 336
||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 307 ATCGTTTGTGAGGGTATTTTTTTAATTCCCTCCTCTCAGAAATCTACACAGAGGTTTTTT 366
Query 337 ATTTTATAAACCTCTTTTTCGAATTTCTTG---a-aaaaaaTCCTGTTCTTTAC-TTTTT 391
|||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||
Sbjct 367 ATTTTATAAACCTCTTTTTCGATTTTCTTGAAAACAAAAAATCCTGTTCTTTACTTTTTT 426
Query 392 T-CAAGAACCA-GGaaaaaaaTTCTCGAATTTAATTTTTATTATAAATGACAACTTCTAT 449
| ||||||| | ||||||||||| || ||||||||| ||||||||||||||||
Sbjct 427 TACAAGAACAAGGGAAAAAAATT-TC--------TTTTTATTAGAAATGACAACTTCTAT 477
Query 450 GGATTTCTACTGTAACAAAACGTTTCAACAATCTGATCCATTCGGTGGTGAATTAATGGA 509
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGATTTTTACAGTAACAAAACGTTTCAACAATCTGATCCATTCGGTGGTGAATTAATGGA 537
Query 510 AGCGCTTTTACCTTTTATCAAAAGCTCTTCCAACGATTCTTCCGCGTTTGCGTTCTCTCT 569
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 538 AGCGCTTTTACCTTTTATCAAAAGCCCTTCCAACGATTCATCCGCGTTTGCGTTCTCTCT 597
Query 570 ACCTGATCCGATTCCATACGGGTCGGACCTCCACTCGTTCTCTCACCATCTTAGTCCTAA 629
||| | ||| ||| ||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 598 ACCCGCTCCAATTTCATACGGGTCGGATCTCCACTCATTTTCTCACCATCTTAGTCCTAA 657
Query 630 ACCGGTCTCAATGAAACAAACCGGTTCTTCAGCGCCTAAACCGACGAAGCTATACCGAGG 689
||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||
Sbjct 658 ACCGGTCTCAATGAAACAAACCGGTACTTCCGCGGCTAAACCGACGAAGCTATACAGAGG 717
Query 690 AGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATTCGTTTACCGAGGAATCGAAC 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATTCGTTTACCGAGGAATCGAAC 777
Query 750 TCGGCTTTGGCTCGGAACATTCGATACGGCGGAGGAAGCTGCATTAGCCTATGACAAGGC 809
||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 778 TCGACTTTGGCTCGGAACATTCGACACGGCGGAGGAAGCTGCTTTAGCTTATGACAAGGC 837
Query 810 GGCGTATAAGCTGCGCGGCGATTTCGC-CAGGCTTAATTTCCCTAATCTCCGTCATAACG 868
|||||||||||| || || ||||| || | |||||||||||||| |||||||||||||||
Sbjct 838 GGCGTATAAGCTCCGAGGAGATTTTGCGC-GGCTTAATTTCCCTGATCTCCGTCATAACG 896
Query 869 GCGAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAACT 928
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACGAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAACT 956
Query 929 TAGCTGAGATGACTCAAAAACAGGGGAAATCAACGAAGAAGTCTTCTTCCCGGAAACGTT 988
||||||||| ||| || ||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 957 TAGCTGAGACGACGCAGAAACAGGTGAGATCAACGAAGAAGTCTTCTTCTCGGAAACGTT 1016
Query 989 CATCAACCGCCGTC-GCGAAACAACCGGAGGAGGATTACTCTAGCGCTGGTTCTTCGCCG 1047
||||||||| || | | ||||| |||||||||||| ||||||||||| || |||||||||
Sbjct 1017 CATCAACCGTCG-CAGTGAAACTACCGGAGGAGGACTACTCTAGCGCCGGATCTTCGCCG 1075
Query 1048 CCGTTAACGGAGAGTTACGGATCTGGTGGATCTTCTTCGCCGTTGTCGGATCTGACGTTT 1107
| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1076 CTGTTAACGGAGAGTTATGGATCTGGTGGATCTTCTTCGCCGTTGTCGGAGCTGACGTTT 1135
Query 1108 GGTGATACGGAGGAGGAGATTCAGCCGCCGTGGAATGAGTTTGCGTTGGAGAAGTATCCG 1167
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1136 GGTGATACGGAGGAGGAGATTCAGCCGCCGTGGAACGAGAACGCGTTGGAGAAGTATCCG 1195
Query 1168 TCGTACGAGATCGATTGGGATTCGATTCTTCAGTGTTCGAGTCTTGTAAATTAGTTGATG 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1196 TCGTACGAGATCGATTGGGATTCGATTCTTCAGTGTTCGAGTCTTGTAAATTAGATGTTG 1255
Query 1228 CCGTAGGGGTATTTTAGGAA-TATTAGATG-TCACTGCAATGGAGTTTTTGGTCATT 1282
|| ||||||||||||||| | | ||||| | || |||| ||||||||||||||||||
Sbjct 1256 CCATAGGGGTATTTTAGGGACT-TTAGA-GCTCTCTGCGATGGAGTTTTTGGTCATT 1310
> AT1G78080.1 | Symbols: RAP2.4 | related to AP2 4 | chr1:29364249-29366073
FORWARD LENGTH=1825
Length=1825
Score = 243 bits (131), Expect = 5e-63
Identities = 177/200 (89%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 670 CCGACGAAGCTATACCGAGGAGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATT 729
||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 983 CCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGATC 1042
Query 730 CGTTTACCGAGGAATCGAACTCGGCTTTGGCTCGGAACATTCGATACGGCGGAGGAAGCT 789
||||| ||||| ||||| ||||| || ||||| || || || || |||||||||||||||
Sbjct 1043 CGTTTGCCGAGAAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCT 1102
Query 790 GCATTAGCCTATGACAAGGCGGCGTATAAGCTGCGCGGCGATTTCGCCAGGCTTAATTTC 849
|| || |||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 1103 GCGTTGGCCTATGATAAGGCGGCGTACAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTC 1162
Query 850 CCTAATCTCCGTCATAACGG 869
||||| || |||||||||||
Sbjct 1163 CCTAACCTACGTCATAACGG 1182
Score = 100 bits (54), Expect = 3e-20
Identities = 101/121 (83%), Gaps = 13/121 (11%)
Strand=Plus/Plus
Query 1081 TCTTCGCCGTTGTCGGATC-TGACGTTTGGTGATACGGAGGAGGAGATTCAGCCGCCGTG 1139
||||||||||||||||| | ||||||| | || || ||||||| | ||||| |||
Sbjct 1427 TCTTCGCCGTTGTCGGA-CTTGACGTTCGCTG--AC-CCGGAGGAG---CCGCCGCAGTG 1479
Query 1140 GAA--TGA-GTT-TGCGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTC 1195
||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GAACGAGACGTTCT-CGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTC 1538
Query 1196 T 1196
|
Sbjct 1539 T 1539
Score = 89.8 bits (48), Expect = 7e-17
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 871 GAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAA-CTT 929
|| ||| |||||||||| || |||||||||||||||||||||||||||||| |||| | |
Sbjct 1208 GAATATAAACCTCTTCACTCCTCAGTCGACGCTAAGCTTGAAGCTATTTGT-AAAAGCAT 1266
Query 930 AGCTGAGATGACTCAAAAACAGGGGAAATCAACGAA 965
|| | || |||||| ||||||| ||||| |||||
Sbjct 1267 GGC-G-GA-GACTCAGAAACAGGACAAATCGACGAA 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5