BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472493
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22530.1 | Symbols: PATL2 | PATELLIN 2 | chr1:7955493-795844... 2309 0.0
> AT1G22530.1 | Symbols: PATL2 | PATELLIN 2 | chr1:7955493-7958442
REVERSE LENGTH=2448
Length=2448
Score = 2309 bits (1250), Expect = 0.0
Identities = 1421/1501 (95%), Gaps = 22/1501 (1%)
Strand=Plus/Plus
Query 822 GCTCCGGTCGTCACAGAGACCAAGGAGGAAGAGAAAGCCA-CTCCGGTCGTCGATGAGAC 880
||||||||| |||||||||||||||||||||||||| || |||| | | || |||||
Sbjct 870 GCTCCGGTCACCACAGAGACCAAGGAGGAAGAGAAAG-CAGCTCC-G--G--GA-GAGAC 922
Query 881 CAAGAAAGAAGAGAAAGCAAGCGCCTCTGCTCCGGTCAAGAGGGCCGTCTCAAAATTTAT 940
|||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||||||
Sbjct 923 CAAGAAAGAAGAGAAAGCAACCGCCTCTACTCAGGTCAAGAGGG-C--CTCAAAATTTAT 979
Query 941 TAAAGATATATTTGTCTCGGTCACCACTACCGAGAAAAAGAAGGAAGAAGAGAAACCAGC 1000
|||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||
Sbjct 980 TAAAGATATATTTGTCTCAGTCACCACTAGCGAGAAGAAGAAGGAAGAAGAGAAACCAGC 1039
Query 1001 AGTAGTAACAATCGAGAAGGCTTTCGCAGCTGATCAAGAAGAAGAAACCAAAACCGTTGA 1060
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1040 AGTAGTAACAATCGAGAAGGCTTTCGCAGCTGATCAAGAAGAAGAAACAAAAACCGTTGA 1099
Query 1061 AGCAACCGAAGAACCGATCGTCTCCATCACTCTTCCAGAGACAGCTGCATACGTAGAGCC 1120
|||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AGCAGTCGAAGAATCAATCGTCTCCATCACTCTTCCAGAGACAGCTGCATACGTAGAGCC 1159
Query 1121 AGAAGAAGTCTCAATCTGGGGAATACCACTTCTAGAGGACGAAAGATCCGACGTAATCCT 1180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1160 AGAAGAAGTCTCAATCTGGGGAATCCCACTTCTAGAGGACGAAAGATCCGACGTGATCCT 1219
Query 1181 CCTCAAGTTCCTCCGGGCACGTGACTTCAAGGTCAAAGAAGCCTTCACGATGCTGAAAAA 1240
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CCTCAAATTCCTCCGTGCACGTGACTTCAAGGTCAAAGAAGCCTTCACGATGCTGAAAAA 1279
Query 1241 CACCGTCCAATGGCGCAAAGAGAACAACATCGATGACCTAGTCTCAGAAGATCTCGAAGG 1300
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1280 CACCGTCCAATGGCGCAAAGAGAACAAGATCGACGACCTAGTCTCAGAAGATCTTGAAGG 1339
Query 1301 AAGCGAGTTCGAGAAGTTGGTGTTCACTCACGGTGTCGACAAACAAGGACATGTTGTGAT 1360
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1340 AAGCGAGTTTGAGAAGTTGGTGTTCACTCACGGTGTCGACAAACAAGGACATGTCGTGAT 1399
Query 1361 CTACAGCTCGTACAGTGAGTTTCAGAACAAGGAGGTTTTCTCAGACAAAGAGAAACTTAG 1420
||| ||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 1400 CTATAGCTCGTACGGTGAGTTTCAGAACAAGGAGATTTTCTCAGATAAAGAGAAGCTTAG 1459
Query 1421 CAAGTTCCTCAAATGGAGGATTCAATTCCAAGAGAAGTGTGTGAGGTCTCTTGACTTTAG 1480
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1460 CAAGTTTCTCAAATGGAGGATTCAGTTCCAAGAGAAGTGTGTGAGGTCTCTTGACTTTAG 1519
Query 1481 CCCTGAGGCTAAGTCATCGTTCGTGTTCGTCAGTGACTTCAGGAACGCTCCTGGACTTGG 1540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1520 CCCTGAGGCTAAGTCATCGTTCGTGTTCGTTAGTGACTTCAGGAACGCTCCTGGACTTGG 1579
Query 1541 TCAGAGAGCATTGTGGCAGTTCATTAAACGTGCCGTTAAGCAATTTGAAGATAACTATCC 1600
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1580 TCAGAGAGCATTGTGGCAGTTCATTAAACGCGCCGTTAAGCAATTCGAAGATAACTATCC 1639
Query 1601 AGAGTTTGTCGCTAAAGAGCTGTTCATTAATGTCCCATGGTGGTACATTCCTTACTACAA 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 AGAGTTTGTCGCTAAAGAGCTGTTCATTAATGTCCCATGGTGGTACATTCCTTACTACAA 1699
Query 1661 AACATTCGGAAGTATCATTACATCGCCGAGGACAAGAAGCAAGATGGTCCTTTCTGGGCC 1720
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1700 AACATTCGGAAGTATCATTACATCGCCAAGGACAAGGAGCAAGATGGTCCTTTCTGGTCC 1759
Query 1721 ATCCAAATCCGCTGAGACCATTTTCAAATATGTAGCTCCTGAAGTAGTCCCGGTTAAGTA 1780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1760 ATCCAAATCCGCTGAGACCATTTTCAAATACGTAGCTCCTGAAGTAGTCCCGGTTAAGTA 1819
Query 1781 TGGTGGTCTGAGCAAAGAGAGCCCATTCACCGTCGAAGATGGAGTCACCGAGGCCGTTGT 1840
|||||| || |||||||| || ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1820 TGGTGGACTCAGCAAAGATAGTCCATTCACCGTTGAAGATGGAGTCACCGAGGCCGTAGT 1879
Query 1841 TAAATCCACATCTAAATATACCATTGATTTGCCTGCTACCGAGGGTTCCACGCTCTCATG 1900
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1880 TAAATCGACATCTAAATATACCATTGATTTGCCTGCTACAGAGGGTTCCACGCTCTCATG 1939
Query 1901 GGAGCTTAGGGTTTTGGGTGCGGACGTGAGCTACGGAGCTCAATTTGAGCCAAGCAATGA 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 GGAGCTTAGGGTTTTGGGTGCGGACGTGAGCTACGGAGCTCAATTTGAGCCAAGCAATGA 1999
Query 1961 GGCAAGCTACACGGTGATCGTCTCTAAGAACCGGAAGGTCGGTTTAACTGATGAACCTGT 2020
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2000 GGCAAGCTACACCGTGATTGTCTCTAAGAACCGGAAGGTCGGTTTAACTGATGAACCGGT 2059
Query 2021 GATAACCGATTCTTTCAAGGCAAGTGAACCGGGAAAGGTCGTGATCACGATTGACAACCA 2080
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2060 GATAACCGATTCTTTCAAGGCAAGTGAGGCGGGAAAGGTCGTGATCACGATTGACAACCA 2119
Query 2081 GACCTTTAAGAAGAAGAAGGTGCTCTACAGGTCCAAAACCCAAGCATAAAGATCATGTAT 2140
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 2120 AACCTTTAAGAAGAAGAAGGTGCTCTACAGGTCCAAAACCCAAGCATAA-GATTATGTGT 2178
Query 2141 CCGATCTTTGAATGAA-GAA-AAA---GAAAGATGGTTTGGGAATTTTAATTAATTTAAT 2195
|||||||||||||||| ||| ||| ||||||||||| ||||||||||||| |||||||
Sbjct 2179 CCGATCTTTGAATGAATGAAGAAACAAGAAAGATGGTT-GGGAATTTTAATTCATTTAAT 2237
Query 2196 TTAGTACGTTTATTCATTTGTGTATTTTTGAAACCTCAAAAGG-GGATTGTGTTTTATCA 2254
|||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 2238 TTAGTACGTTTATTCATTTGTGTATTTTTGAAACCT-AAAAGAAGGTTTGTGTTTTATGG 2296
Query 2255 ATGGTTTTGATTTGTTT-GGTGATGGGAtttttttt-GTTGATGATTCTTATAAATACAA 2312
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2297 ATGGTTTTGATTTGTTTTGGTGATGGGATTTTTTTTTGTTGATGATTCTTATATATACAA 2356
Query 2313 A 2313
|
Sbjct 2357 A 2357
Score = 785 bits (425), Expect = 0.0
Identities = 784/941 (83%), Gaps = 90/941 (10%)
Strand=Plus/Plus
Query 1 tctcttctctctttttataagacctcttcttcttcttcttctctctcaattcca----tc 56
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 16 TCTCTTCTCTCTTTTTATAAGAACTCTTCTTCTTCTTCTTCTCTCTCAATTCCATCTCTC 75
Query 57 tctctctttctaattcttGTTCCCTTTTGCATCAAGTCAATCATGGCTCAAGAAGAGATA 116
|||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 76 TCTCTCTTTCTAGTTCTTGTTCCCTTTCGAATCAAGT-GATCATGGCTCAAGAAGAGATA 134
Query 117 CAGAAACCTGCTGCTTCAATTACTGCCT-CTGTTACGGTTAAGGAGGATACTCCTGCGCC 175
||||||||| |||| | | ||| | | | | |||||||||||| |||||||| ||
Sbjct 135 CAGAAACCTACTGC--C---T-CTG-TTCCAG-T--GGTTAAGGAGGAAACTCCTGCCCC 184
Query 176 GGTTAAGGAGGTTGAGGTGCCCGTTGCAACGGAGAAAGCTGTGGCAGCGCCTGCTCTGGA 235
||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||| |||
Sbjct 185 GGTTAAGGAGGTTGAGGTGCCGGTTACTACGGAGAAAGCTGTGGCTGCGCCTGCTCCGGA 244
Query 236 GGAG-AAAGTTGTGTCTGAGAAGGAGGTGCCCGTCGTGGCGGTGCCGGAAACGGAGGTGA 294
|| | | | | ||||| | ||| | | ||||||||||| ||||| |||||||
Sbjct 245 --AGCTACG--GAG---GAGAAAGTTGTGTCTGAGGTGGCGGTGCCTGAAACAGAGGTGA 297
Query 295 CGGCGGTGAAAGAGGAGGAGGTTGTGACGGGGAAGGAGATCTTGCAATCGGAATCGTTTA 354
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 298 CGGCGGTGAAAGAGGAGGAGGTTGCGACGGGAAAGGAGATCTTGCAATCGGAGTCGTTTA 357
Query 355 AGGAGGAAGGCTATTTGGCTTCTGAATTGCCGGAAGCTGAAAAGAATGCGTTGGCTGAGT 414
|||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||
Sbjct 358 AGGAGGAAGGCTATTTGGCTTCTGAATTACAGGAAGCTGAGAAGAATGCTTTGGCTGAGT 417
Query 415 TAAAGGAGATGGTTAGGGAGGCTTTGAACAAGCGTGAATTCACCGCG---CCG---CCAC 468
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 418 TAAAGGAGTTGGTTAGGGAGGCTTTGAACAAGCGTGAATTCACCGCGCCACCGCCACCAC 477
Query 469 CAGCTCCGGCCAAGGAAGAGAAAGTTGA-G-G-AG---A-AGA--AAAC----------- 508
||||||||| ||||||||||||||||| | | || | ||| ||||
Sbjct 478 CAGCTCCGGTAAAGGAAGAGAAAGTTGAGGAGAAGAAAACAGAGGAAACAGAGGAAAAGA 537
Query 509 A-G-AG--G---AAACAGAGGAAAAATCTGTTGAGGCTGAAACCAAA-ACAGAGGAGAAA 560
| | || | ||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 538 AGGAAGAAGTTAAAACAGAGGAAAAATCTCTTGAGGCTGAAACCAAAGA-AGAGGAGAAA 596
Query 561 TCTGCTGCTCCGGCCACCGTAGAGACCAAGAAAGAAGAGATATTGGCCGCTCCGGCTCCA 620
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 TCTGCTGCTCCGGCCACCGTAGAGACCAAGAAAGAAGAGATCTTGGCCGCTCCGGCTCCG 656
Query 621 ATCGTCGCAGAGACCAAGAAGGAAGAGAAATCGGTCGCTCCTACTCCGGTAGAGACTACA 680
|||||||||||||||||||||||||||| | | || |||||| ||||||||||||||| |
Sbjct 657 ATCGTCGCAGAGACCAAGAAGGAAGAGACACCAGTTGCTCCTGCTCCGGTAGAGACTAAA 716
Query 681 CCTGCTGCTCCTGTCGTTGCAGAGACCAAGAAGGAAGAGATATCAGCC-GCTCCTACTCC 739
|| |||||||| |||||||||||||| ||||||||||| |||| | || ||| || | |
Sbjct 717 CCGGCTGCTCCGGTCGTTGCAGAGACAAAGAAGGAAGAAATATTA-CCAGCTGCT-C-C- 772
Query 740 GGTTGAAACCAAACCAGCTGCTCCGGTCACCACAGAGACCAAGGTGGAAGAGAAAGTCGT 799
||| | ||| | || | |||| || | ||||||||||||||||
Sbjct 773 GGTC-A--CCA--C-AGA-G--------ACCA-AG-G-------TGGAAGAGAAAGTCGT 808
Query 800 TCCCGTAGAGACCACACCGGCGGCTCCGGTCGTCACAGAGACCAAGGAGGAAGAGAAAGC 859
||| ||||| ||||||||||| ||||| ||| ||||||||||||||| |||||||||||
Sbjct 809 TCCAGTAGAAACCACACCGGCTGCTCCAGTCACCACAGAGACCAAGGAAGAAGAGAAAGC 868
Query 860 CACTCCGGTCGTCG-ATGAGACCAAGAAAGAAGAGAAAGCA 899
| |||||||| | | ||||||||| | ||||||||||||
Sbjct 869 CGCTCCGGTCACCACA-GAGACCAAGGAGGAAGAGAAAGCA 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114808646415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5