BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472502
Length=497
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22630.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 708 0.0
> AT1G22630.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; Has 87 Blast hits to 86 proteins in 34 species:
Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants
- 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
| chr1:8003315-8004304 FORWARD LENGTH=642
Length=642
Score = 708 bits (383), Expect = 0.0
Identities = 479/520 (92%), Gaps = 28/520 (5%)
Strand=Plus/Plus
Query 1 ATCCTCGTCAACATATTCCATCCACATGATCCGTTTCAATATCCACACACCACACCACAA 60
||||| ||||||||||||| |||||||||||||||||||||| | |||| | |||||||
Sbjct 1 ATCCTTGTCAACATATTCCCTCCACATGATCCGTTTCAATAT-C-CACA--A-ACCACAA 55
Query 61 CCAAGCAAACTCTTTAGCTTTCTCCCACCATCCATATTCACTAT--C----A--C----- 107
||||||||| |||||||||||||| ||||||||||||||||||| | | |
Sbjct 56 CCAAGCAAATTCTTTAGCTTTCTCACACCATCCATATTCACTATCACTTGTATGCATAGA 115
Query 108 -ATG----T--ATG--CATAGATA-CTTACTTCCTAGTTCTAATTTGAGTTACAAAAATG 157
||| | ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 116 TATGCATATAGATGTACATAGATATCTTACTTCCTAGTTCTAATTTGAGTTACAAAAATG 175
Query 158 TTGAAATTTCCACTTTGTTGCAGTGAGTTATCTTTAGAACCCAAGGTTCTAGCTTTTGAA 217
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 176 TTGAAATTTCCACTTTGTTGCAGTGAGTTATCTTTAGAACCGAAGATTCTAGCTTTTGAA 235
Query 218 AGACAGCTTGTTTCGGGGCGACGCGATTCCATCAAAGTTTCTGCGGGAAAAATTGGAAAT 277
|| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 236 AGTCAGCTTGTTTCGGGGCGACGCGATACAATCAAAGTTTCTGCGGGAAAAATCGGAAAT 295
Query 278 TTCTCTCTTGGTTCGATATTCAAAAGTTGCGAGACTTGTGGAACCAAAGGAGCAATTGAA 337
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 296 TTCTCTCTTGGTTCGATATTCAAAAGTTGTGAGACTTGTGGAGCCAAAGGAGCAATTGAA 355
Query 338 TGTCCCGGTTGCAAGGGAACAGGTAAAAATAAGAAGAACGGAAATATGTTTGAGAGGTGG 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGTCCCGGTTGCAAGGGAACAGGTAAAAATAAGAAGAACGGAAATATGTTTGAGAGGTGG 415
Query 398 AAATGTTTTGATTGTCAAGGATTTGGTATGAAGAGTTGTCCTAAATGTGGCAAGGGAGGC 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AAATGTTTTGATTGTCAAGGATTTGGTATGAAGAGTTGTCCTAAATGTGGCAAGGGAGGC 475
Query 458 TTGACGCCTGAACAGAGAGGGGAACGATAGAGTTATACTA 497
||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 TTGACGCCTGAACAGAGAGGGGAACGATAGACTTATACTA 515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23710517384
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5