BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472519
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22750.4 | Symbols: | unknown protein; CONTAINS InterPro DO... 1400 0.0
> AT1G22750.4 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943);
Has 186 Blast hits to 155 proteins in 21 species: Archae
- 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65;
Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). |
chr1:8050860-8052904 FORWARD LENGTH=1015
Length=1015
Score = 1400 bits (758), Expect = 0.0
Identities = 903/968 (93%), Gaps = 29/968 (3%)
Strand=Plus/Plus
Query 1 CTTTTCGATTTCGCTTCCTCTCGTCTTTCTCTGTGGTGGTAACAATGGCGACGAATAGTT 60
|||||||||||| ||||||||||||| ||||| | || ||||||||||||||| |||||
Sbjct 11 CTTTTCGATTTCTCTTCCTCTCGTCTCTCTCTCT-GT--TAACAATGGCGACGACTAGTT 67
Query 61 TAGTAACCGGACTAAAAGTGACT-TTACCGGTTATGTTCTGTGTGATGCTAGCGACTCTT 119
|||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 68 TAGTGACCGGACTAAAAGTG-GTATTACCGGTTATGTTCTGTCTGATGCTAGCGACTCTT 126
Query 120 GTCTACACCATTATCAACGATGGCCTTCCTTTACCTGATCGTCAAGATGTCTTCACACCA 179
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GTCTACACCATCATCACCGATGGCCTTCCTTTACCTGATCGTCAAGATGTCTTCACACCA 186
Query 180 TGGTTCGTTACGACAATTCTGGATTTCTACATTAA-CGTTGTACCTATAGCGGTTTGGAT 238
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 187 TGGTTCGTTACGACAATTTTGGATTTCTACATTAATC-TTGTACCTATAGCGGTTTGGAT 245
Query 239 TGTGTATAAGGAGTCTACATGGTCTGGCTCAATACTTTGGACCATTTTGCTCTTAATTTT 298
||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 246 TGTGTATAAGGAGTCTACATGGTCTGGTTCAATACTTTGGACCATTTTGCTCATCATTTT 305
Query 299 TGGCAGCCTCACGACATGTGTGTATGTGTTTCTGCAACTTCTCAAGCTGACAAATCAAGA 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 306 TGGCAGCCTCACGACATGTGTGTATCTGTTTCTGCAACTTCTCAAGCTGACAAATCAAGA 365
Query 359 AGCTTCAGAAGATCCTATGTACTATTTGTTACTTCGAGATTCAATCAAGGATGGAGTGGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 366 AGCTTCAGAAGATCCTATGTACTATTTGTTACTTCGAGATTCAATCAAGGATGGAGTTGG 425
Query 419 TCTGAGAGACAAGAATTCACTTGTTGTCACTGCAAGATTTGTGTTTGGTGCCTTAGGATG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TCTGAGAGACAAGAATTCACTTGTTGTCACTGCAAGATTTGTGTTTGGTGCCTTAGGATG 485
Query 479 TGTGATGCTAGGAGCTTTGATCTACACTTGCTTGACTTATGGTTCTCCTTTCCACATGGA 538
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 486 TGTGATGCTAGGAGCTTTGGTTTACACTTGCTTCACTTATGGTTCTCCTTTCCACATGGA 545
Query 539 GCTTCTATACCCGTGGATGGTGGTTTTATTGGTTAACTTCTACATTAATGTTGCAGTCTT 598
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 546 GCTTCTATACCCGTGGATGGTGGTTTTATTGGTTAACTTCTACATTGATGTTGCTGTCTT 605
Query 599 ATCAGTTTGGGTTGTCTATAAAGAATCTAGTTGGATCGTTGGAATTCTCTGGGTTGCTCT 658
|||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 606 ATCAGTTTGGGTTGTCTATAAAGAATCTAGTTTGATCATTGGAATTCTATGGGTTGCTCT 665
Query 659 ATTGATAGGTCTTGGCAGCGTTGGCACGAGCGTAGCCATTGTCGTGCAGCTATTCCGTCT 718
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 666 ATTGATAGGTCTTGGCAGCGTTGGCACGAGCGCAGTCATTGTCGTGCAGCTATTCCGTCT 725
Query 719 ATCTCCTCTCGACCCGCTCTACCTCGTTCTGGTGAACAACAGCAATCGGGCTGGAGATAT 778
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 726 GTCTCCTCTCGACCCGCTCTACCTCGTTCTAGTGAACAACAGCAATCGGGCTGGAGATAT 785
Query 779 GTATGAGCGCACTCATTCTGCGGTTTTGCG--TA-TGTGAAGCTTTGTGATTTCGTTTTT 835
||| ||||||||||||||||||| |||||| || ||||||||||||| ||||| |||||
Sbjct 786 GTACGAGCGCACTCATTCTGCGGCTTTGCGCATAATGTGAAGCTTTGTCATTTCATTTTT 845
Query 836 A-C-TTTTCACCACAAAAGTTCAAA-C-TAC----AT-TACA----A-GTTTGTATGTTC 881
| | |||| |||||||||||||||| | || || |||| | |||||||||||
Sbjct 846 AACATTTT-ACCACAAAAGTTCAAAACATATTTTTATCTACATTTTAAGTTTGTATGTTT 904
Query 882 CATAGTTTTCTTCTGTATATAGTTTCTCTTATGTGA-GAAAACAATTACTTATGTAATCA 940
||||||||||||||||||||| |||||||||||||| || |||||||||||||| | |
Sbjct 905 CATAGTTTTCTTCTGTATATACTTTCTCTTATGTGACGA---CAATTACTTATGTACTTA 961
Query 941 ACTTTTTT 948
||||||||
Sbjct 962 ACTTTTTT 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5