BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472530 Length=1259 Score E Sequences producing significant alignments: (Bits) Value AT1G22850.1 | Symbols: | SNARE associated Golgi protein family... 1537 0.0 > AT1G22850.1 | Symbols: | SNARE associated Golgi protein family | chr1:8080482-8082875 REVERSE LENGTH=1283 Length=1283 Score = 1537 bits (832), Expect = 0.0 Identities = 1140/1276 (89%), Gaps = 71/1276 (6%) Strand=Plus/Plus Query 19 TCATCATCATCTCCATTAAAGCTGCTTAAAAATGCGCAGCCTTACTACTCTGGGTCTGAc 78 ||||||||||||||||||||||||||||| ||||||||||| | | ||||| |||||||| Sbjct 29 TCATCATCATCTCCATTAAAGCTGCTTAAGAATGCGCAGCC-T-C-ACTCTAGGTCTGAC 85 Query 79 tctcagatcctcctcctcctcatctcttccattcacctgcaacttccgc-t-t-ct-t-c 133 ||||||||||||||||||||| |||||||||||||||||||||| |||| | | || | | Sbjct 86 TCTCAGATCCTCCTCCTCCTCTTCTCTTCCATTCACCTGCAACTCCCGCTTCTGCTCTCC 145 Query 134 t-ctcctccttcttc-t--tctAGACTCTGCAGACGATTTCATTTCCTTAAACCATGTTC 189 | ||||||||||||| | | |||||||| || |||||| ||||||||||||||||| || Sbjct 146 TCCTCCTCCTTCTTCGTCCTTTAGACTCTACAAACGATTCCATTTCCTTAAACCATGCTC 205 Query 190 TTCCCTCAAGCAAACCAAGAAGAAGAAGCAACAGTCTCTCCCATCCACCGCCCCGCCTCC 249 |||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 206 TTCCCTAAAGCAAACCAAGAAGAAGAAGCAACAGTCTCTCCCATCTACCGCTCCGCCTCC 265 Query 250 TCAGAGTCTCCGGTGGTTCTTCAATCCCAAATCCAGTGATGATGATAACGACGAAGATGA 309 ||||||||||||||||||||||||| | ||||||| | ||||||| |||||||||||||| Sbjct 266 TCAGAGTCTCCGGTGGTTCTTCAATTCTAAATCCACTAATGATGAAAACGACGAAGATGA 325 Query 310 TGCTAAGTCTGAGAGCGATGACGATGGCGGATCGGAAGGTGATGCTGCTATTAAGGGTAC 369 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 326 TGTTAAGTCTGAGAGCGATGATGATGGCGGATCGGAAGGTGATGCTGCTATTAAGGGTAC 385 Query 370 TATCTTAGCCGGAGTTTTGTTGATTGGTACTGTTGGTGGATTCGCCGGCGTTGGATATGT 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 TATCTTAGCCGGAGTTTTGTTGATTGGTACTGTTGGTGGATTCGCCGGCGTTGGATATGT 445 Query 430 CTATAGGGATCAGATTAATACGTTCCTCACTCAATTCTCCACTTACATCGAAGGTTATGG 489 ||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 446 CTACAGGGATCAGATCAATACTTTCCTTACTCAATTCTCCACTTACATCGAAGGTTATGG 505 Query 490 TACGGCTGGGTATGC-TCTGTTCATTGCCGTTTATGCTGGCCTTGAGGCAAGCTTTTTCA 548 ||||||||||||||| | | ||||||||||| |||||||| ||| | || | Sbjct 506 TACGGCTGGGTATGCGT-TATTCATTGCCGTCTATGCTGGGCTT---G--AG-------A 552 Query 549 TACTCTTTCATATATTAGCCATTCCGGCTCTCCCATTGACGATGTCGGCTGGTCTTCTCT 608 || | |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 553 TA------C------TAGCCATTCCAGCTCTCCCATTGACGATGTCGGCTGGTCTTCTCT 600 Query 609 TTGGTCCCCTCATTGGTACTATCATAGTTTCTATCAGTGGAACAATGGCTGCTAGTGTTG 668 | ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 601 TCGGTCCACTCATTGGCACTATCATAGTTTCTATCAGTGGAACTATGGCTGCTAGTGTTG 660 Query 669 CTTTCTTAATTGCCAGATACTTTGCCCGAGAGCGCATCCTTAAGTTAGTTGAAGACAACA 728 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 661 CTTTCTTAATTGCTAGATATTTTGCCCGAGAGCGCATCCTTAAGTTAGTTGAAGACAACA 720 Query 729 AGAAGTTCCTTGCCATTGATAAAGCAATTGGTGAAAATGGGTTTAGAGTTGTTACTCTGC 788 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 721 AGAAGTTCCTCGCCATTGATAAAGCGATTGGTGAAAATGGGTTTAGAGTTGTTACTCTCC 780 Query 789 TTCGGCTAAGCCCTCTACTTCCTTTCTCTCTTGGCAATTACCTGTACGGGTTGACATCTG 848 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 781 TTCGGCTAAGCCCTCTACTTCCTTTCTCTCTTGGCAATTACCTGTACGGGTTGACGTCTG 840 Query 849 TGAAGTTTGTGCCTTATGTATTAGGAAGCTGGTTGGGTATGCTTCCAGGCTCTTGGGCTT 908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TGAAGTTTGTGCCTTATGTATTAGGAAGCTGGTTGGGTATGCTTCCAGGCTCTTGGGCTT 900 Query 909 ATGTCAGTGCTGGGGCTTTTGGACGAGCAATCATTCAAGAAGAATCTAATGTTGGCTTGC 968 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ATGTCAGCGCCGGGGCTTTTGGACGAGCAATCATTCAAGAAGAATCTAATGTTGGCTTGC 960 Query 969 CTGGAGGAAATGGCCAGCTCTTAACGCTCGGGGTAGGTCTGCTGGTTACTGCATTGGCTG 1028 |||||||||| |||||||| ||||| |||||||| |||||| |||||||||||||||||| Sbjct 961 CTGGAGGAAACGGCCAGCTTTTAACTCTCGGGGTGGGTCTGTTGGTTACTGCATTGGCTG 1020 Query 1029 CAACATATGTGACAGGCCTTGCAAAGGATGCTATAAAGGATATTGATGATGATGATAAGT 1088 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1021 GAACATATGTGACAAGCCTTGCAAAGGATGCTATAAAGGATATTGATGATGATGAGAAG- 1079 Query 1089 AGAGA-G-AGA-T-GCAAACTA---AG--A----A-A-T--TTT-GATTCTCTAGGATTT 1130 ||||| | | | | | |||| | || | | | | ||| || |||||||||||| Sbjct 1080 AGAGATGCAAAGTAGGAAACAAGCCAGCGATTGGATAATGGTTTTGACTCTCTAGGATTT 1139 Query 1131 GTAAAAAACCTTAACAGAGTATCATATCATGA-CATCAA-T--ATTGTTCCATTATTATT 1186 |||||| || ||||||||||||| | || | | | || | |||| ||||||||| Sbjct 1140 GTAAAACGCC--AACAGAGTATCATGT-ATCAACGTTAAATGTATTGCTCCATTATT--- 1193 Query 1187 GTTCATAGTTGATATATAATTTTGAATCTTTTTTGTTCTTTAAAATTAAGCTGCAATA-T 1245 ||| ||||||||||||||||| ||||||||||||| ||| ||| |||||| ||||| | Sbjct 1194 GTTAATAGTTGATATATAATTC-GAATCTTTTTTGTCCTTCAAATTTAAGCACCAATAAT 1252 Query 1246 --GTGAGAAAATGCTT 1259 |||||||||||||| Sbjct 1253 AAGTGAGAAAATGCTT 1268 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61897271985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5