BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472545
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22940.1 | Symbols: TH1, TH-1, THIE | thiamin biosynthesis p... 2619 0.0
> AT1G22940.1 | Symbols: TH1, TH-1, THIE | thiamin biosynthesis
protein, putative | chr1:8122339-8125068 FORWARD LENGTH=1774
Length=1774
Score = 2619 bits (1418), Expect = 0.0
Identities = 1588/1670 (95%), Gaps = 12/1670 (1%)
Strand=Plus/Plus
Query 1 AATAAAATAAAAGGAAATAAAGA-AAGGGACGAGAAATGAATAGCTTAGGAGGAATTAGA 59
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 10 AATAAAATAAAATAAAATAAAGAGAAGGGACGAGAAATGAATAGCTTAGGAGGAATTAGG 69
Query 60 AGTTGGCCGGCGAATTGGAGAAGCACGACGGCGTCAATGACGACGACGGAGAGTGTTAGA 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 70 AGTTGGCCGGCGAATTGGAGAAGTACGACGGCGTCAATGACGACGACGGAGAGCGTTAGA 129
Query 120 AAGGTACCGCAAGTTCTAACTGTGGCGGGATCAGATTCCGGCGCCGGAGCTGGAATCCAA 179
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 130 AAGGTACCGCAAGTTTTAACAGTGGCGGGATCAGATTCCGGCGCCGGAGCTGGAATTCAA 189
Query 180 GCAGATCTCAAAGTTTGTGCCGCTCGTGGTGTCTATTGCGCTTCCGTCATAACCGCCGTC 239
|| || || ||||| || || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 190 GCCGACCTTAAAGTCTGCGCAGCTCGTGGTGTGTATTGCGCTTCCGTCATAACCGCAGTC 249
Query 240 ACTGCTCAGAACACTCGAGGAGTCCAATCTGTTCATCTTCTACCTCCGGAATTCGTCTCT 299
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 250 ACTGCTCAGAACACTCGAGGAGTTCAATCTGTTCATCTTCTTCCTCCGGAATTTATCTCT 309
Query 300 GAACAGCTCAAATCTGTCCTCTCTGACTTTGAATTTGACGTCGTGAAGACTGGGATGCTT 359
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 310 GAACAGCTCAAATCCGTCCTCTCTGACTTCGAATTCGACGTCGTGAAGACTGGGATGCTT 369
Query 360 CCTTCTACTGAGATCGTTGAGGTTCTTCTTCAAAATCTAACAGATTTTCCAGTTCGTGCT 419
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 370 CCTTCTACTGAGATCGTTGAGGTTCTTCTTCAAAATCTATCAGATTTTCCAGTTCGTGCT 429
Query 420 TTGGTTGTTGATCCTGTGATGGTATCTACGAGTGGGCATGTTCTT-GCTGGTTCTTCTAT 478
||||||||||||||||||||||||||||| ||||| || ||| || ||||||||||||||
Sbjct 430 TTGGTTGTTGATCCTGTGATGGTATCTACTAGTGGTCACGTT-TTGGCTGGTTCTTCTAT 488
Query 479 TCTCTCTATCTTTAGAGAGAGATTACTGCCAATTGCTGACATTATAACCCCAAATGTGAA 538
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 489 TCTCTCTATCTTTAGAGAGAGATTACTACCAATTGCTGACATAATTACCCCAAATGTGAA 548
Query 539 AGAGGCATCTGCTTTACTTGGTGGTTTTCGGATTGAGACTGTTGCAGATATGCGGTCTGC 598
|||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 549 AGAGGCTTCTGCTTTACTTGATGGTTTTCGGATTGAGACTGTTGCAGAAATGCGGTCTGC 608
Query 599 AGCAAAGTCGTTGCATGAAATGGGTCCTAGATTCGTACTTGTTAAAGGTGGTGATCTTCC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AGCAAAGTCGTTGCATGAAATGGGTCCTAGATTCGTACTTGTTAAAGGTGGTGATCTTCC 668
Query 659 TGACTCATCAGATTCAGTAGATGTTTACTTTGATGGCAAGGAGTTTCATGAACTCCGTTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TGACTCATCAGATTCAGTAGATGTTTACTTTGATGGCAAGGAGTTTCATGAACTCCGTTC 728
Query 719 TCCTCGCGTAGCTACAAGAAATACTCATGGGACTGGTTGCACTTTGGCTTCATGTATTGC 778
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 729 TCCTCGCATAGCTACAAGAAATACTCATGGGACTGGTTGCACTTTGGCTTCCTGTATTGC 788
Query 779 AGCAGAGCTTGCAAAAGGCTCTTCCATGCTCTCAGCCGTGAAGGTGGCTAAACGCTTCGT 838
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 789 AGCTGAGCTTGCAAAAGGCTCTTCCATGCTCTCAGCCGTCAAGGTGGCTAAACGCTTTGT 848
Query 839 CGATAATGCCCTAGATTACAGCAAAGATATTGCCATTGGCAGTGGGATGCAAGGACCGTT 898
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 849 CGATAATGCCCTAGATTACAGCAAAGATATTGTCATTGGCAGTGGGATGCAAGGACCTTT 908
Query 899 TGACCACTTTTTCGGTCTTAAGAAGGATCCCCAAAGTTCTCGATGCAGCATATTCAATCC 958
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 909 TGACCATTTTTTTGGTCTTAAGAAGGATCCTCAAAGTTCTCGATGCAGCATATTCAATCC 968
Query 959 AGATGACCTGTTTCTATATGCTGTTACAGATTCTAGAATGAACAGAAAATGGAACCGGTC 1018
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 969 AGATGACCTGTTTCTATATGCTGTTACAGATTCTAGAATGAACAAAAAATGGAACCGTTC 1028
Query 1019 CATTGTGGATGCCGTGAAAGCTGCTATAGAGGGAGGGGCCACAATCATACAACTGAGGGA 1078
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1029 CATTGTGGATGCCTTGAAAGCTGCTATAGAGGGAGGGGCCACCATCATACAACTGAGGGA 1088
Query 1079 GAAAGAAGCCGAAACACGGGAGTTTCTCGAAGAAGCAAAAGCATGCGTTGACATATGCCG 1138
||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 1089 GAAAGAAGCCGAAACACGGGAGTTTCTTGAAGAAGCAAAAGCATGCATTGATATATGCCG 1148
Query 1139 GTCCCACAGAGTTATTTTGCTGATAAACGACAGGATCGACATCGCCCTTGCTTGTAATGC 1198
|||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1149 GTCCCATGGAGTTAGTTTGCTGATAAACGACAGGATCGACATTGCCCTTGCTTGTGATGC 1208
Query 1199 TGATGGAGTCCATGTTGGTCAATCCGACATGCCGGTTGATCTAGTTCGGTCTCTTCTTGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TGATGGAGTCCATGTTGGTCAATCCGACATGCCGGTTGATCTAGTTCGGTCTCTTCTTGG 1268
Query 1259 CCCGGACAAGATCATCGGGGTCTCATGTAAGACACCAGAACAAGCTCATCAAGCATGGAA 1318
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CCCGGACAAGATCATAGGGGTCTCATGTAAGACACCAGAACAAGCTCATCAAGCATGGAA 1328
Query 1319 AGATGGTGCGGACTACATTGGGTCCGGAGGAGTTTTTCCAACAAACACTAAGGCCAACAA 1378
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1329 AGATGGTGCGGACTACATTGGGTCAGGAGGAGTTTTTCCAACGAACACTAAGGCCAACAA 1388
Query 1379 TCGTACCATAGGACTTGATGGGCTAAAAGAAGTATGTGAGGCATCAAAATTACCGGTCGT 1438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1389 TCGTACCATAGGACTTGATGGGCTAAAAGAAGTATGTGAAGCATCAAAATTACCGGTTGT 1448
Query 1439 TGCCATCGGAGGCATAGGGATCTCAAATGCTAAGTCTGTTATGCAGATCGATGCACCGAA 1498
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1449 TGCAATCGGAGGCATAGGGATCTCAAATGCTGGGTCTGTTATGCAGATCGATGCACCGAA 1508
Query 1499 CCTAAAAGGCGTAGCAGTTGTGTCAGCTTTGTTCGACCAAGATTGTGTTTTGACTCAAGC 1558
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 CCTAAAAGGTGTAGCAGTTGTGTCAGCTTTGTTCGACCAAGATTGTGTTTTGACTCAAGC 1568
Query 1559 TAAAAAGTTGCATAAAACGCTTAAAGAGAGCAAAAGGGAAATTTGAAGACGCCCAAAAGG 1618
||| |||||||||||||||||||||||||||||||||| |||||||| | | ||||||
Sbjct 1569 TAAGAAGTTGCATAAAACGCTTAAAGAGAGCAAAAGGGGAATTTGAA--C-C--AAAAGG 1623
Query 1619 TGTTTTTA-TTTTGGTTTTCACAAA-TTACAAAATGTTGTAAACCTTTTA 1666
|||||||| ||||| |||| | ||||||||||||||||||||||||
Sbjct 1624 TGTTTTTAGTTTTG-TTTT-AGGTGCTTACAAAATGTTGTAAACCTTTTA 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84838921050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5