BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472566 Length=855 Score E Sequences producing significant alignments: (Bits) Value AT1G23110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1181 0.0 > AT1G23110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 59 Blast hits to 59 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8196447-8198063 REVERSE LENGTH=1211 Length=1211 Score = 1181 bits (639), Expect = 0.0 Identities = 788/856 (92%), Gaps = 26/856 (3%) Strand=Plus/Plus Query 20 AGCAATCAAATTTTAGAAC--AA-AA--GAGGCAACAAAGTAGTTGGATTGTTCTGGTAT 74 ||||||||||||||||||| || || ||| ||||||||||||| |||| ||||||| Sbjct 201 AGCAATCAAATTTTAGAACAGAACAAGGGAGACAACAAAGTAGTTTGATTATTCTGGTGG 260 Query 75 CGTATAGAGAGATTTTGGTTCTGTGTGGTTTCAGGAAGATT-TCATGAGCCTCCAAAATG 133 |||||||| | || |||||| | |||||||| || |||||| |||||| || ||||||| Sbjct 261 CGTATAGATAAATGTTGGTTGTCTGTGGTTT-AGCAAGATTACCATGAGTCTGCAAAATG 319 Query 134 TATCAAAGTCAAGCAATAATGCCCTTGAGGGTATCCATGGGGTTCATGTCACGTCTCATT 193 |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 320 TATCAAAGTCGAGC---AATGCCCTTGAGGGTATCCACGGGGTTCATGTCACGTCTCATT 376 Query 194 CGCCCTTCTCATTTGAGAAGACAACTCAAGTTAGTGAC--T----------CCAAATCCA 241 | || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 377 CTCCTTTCTCATTTGAGAAGACAACTCAAGTTAGTGACTTTCAGACCAACACCAAATCCT 436 Query 242 CAGACATGGAATCAAATCAGAGAC-TGCTCATCGAACGTTTTTGGCAACAGAGACCTCCA 300 | | ||||||||||||||| |||| | | |||||||||||||||||| || ||||||||| Sbjct 437 CTGTCATGGAATCAAATCAAAGACTTTC-CATCGAACGTTTTTGGCAGCAAAGACCTCCA 495 Query 301 TGCTTAAGGCCAATCTGTTGCAGCATCCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 360 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 496 TGCTTAAGGCCAATCTGTTGCAGCATTCGCGGTGACCAGAGTGTCTTAGAAACAGCTGCT 555 Query 361 AATGTGGCTACTTCACTTCCTTTCATATTCCTCGGTTTGCAGGCACCAAGGAAGAATCTG 420 |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 556 AATGTGGCTACTTCACTTCCTTTCATCTTCCTCGGAATGCAGGCACCAAGGAAGAATCTG 615 Query 421 AACACAAAGGTGTACGCAAACTCCTTAATTGGAGTTGGAATTGCATCGAGTCTGTATCAT 480 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 616 AACACAAAGGTGTACGCAAACTCCCTAATTGGAGTTGGAATTGCGTCGAGTCTGTATCAT 675 Query 481 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 676 GCCTCTAGGGGAAAGTTGAGGAAGTACCTGAGATGGGTAGATTACACAATGATAGCCACA 735 Query 541 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAGTTTTTGATGGCTGCA 600 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 736 ACAACAATATGTCTCTCAAGGGCTCTAAGGAATGAGAACCCAAAATTTCTGATGGCTGCA 795 Query 601 TCAGCTTTAGTTCTACCTTTTCAGCCTCTCATGGTCTCTGCCGTTCACACCGGAATGATG 660 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 796 TCAGCTTTAGTTCTACCTTTTCAACCTCTCATGGTCTCTGCCGTTCACACTGGAATGATG 855 Query 661 GAAGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACCGCTCATAACGTA 720 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 856 GAGGTCGCATTTGCTAAAAGAAGCTTAAAGGATCCAGATCTCAAAACAGCTCATAACGTA 915 Query 721 CACAAGATGTCTTCATTGCTAGGAGGTGC-CTTGTTCATAGCTGATGATTTCTTCCCCGA 779 |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| Sbjct 916 CACAAGATGTCTTCCTTGCTAGGAGGTGCTCT-GTTCATAGCTGATGATTTCTTCCCCGA 974 Query 780 GACACCATTCATTCACGCCGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 839 |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 975 GACACCTTTCCTTCACGCAGGCTGGCACCTCGCTGCAGCCATTGGAGTTGGAACATGCAA 1034 Query 840 TAAGCTTCTTGAGTAG 855 ||| |||||||||||| Sbjct 1035 TAAACTTCTTGAGTAG 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41694342010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5