BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472578
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23205.1 | Symbols: | Plant invertase/pectin methylesterase... 1428 0.0
> AT1G23205.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:8233997-8234893 REVERSE
LENGTH=897
Length=897
Score = 1428 bits (773), Expect = 0.0
Identities = 859/899 (96%), Gaps = 12/899 (1%)
Strand=Plus/Plus
Query 1 ATCCATAACCCAAAAAGAGTCACTTCCGTGTCACAAAAAACCATGAAACCTTCTCTTCAT 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 ATCCATAACCCAAAAAGAGTCACTTCCGTGTCACAAGAAACCATGAAACTTTCTCTTCAT 60
Query 61 CAACCACTTCTCTTCTTCTTCTTAGCCACCGTCCTCCCATTAATCCTGACCGTCCATCCT 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 61 CAACCACTTCTCTTCTTCTTCTTAGCCAGCGTCCTCCCATTAATCCTGACCGTCCATTCT 120
Query 121 CAATCAGACGACTCAGATTTCATCCGTACTAGCTGCAACACCACATTATACCCTGACCTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAATCAGACGACTCAGATTTCATCCGTACTAGCTGCAACACCACATTATACCCTGACCTA 180
Query 181 TGCTTCTCCTCTCTTTCCTCCTTCTCTAGCTCTGTCCACAACGATCCAGCCCTCTTGGCT 240
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TGCTTCTCTTCTCTTTCCTCCTTCTCTAGCTCTGTTCACAACGATCCAGCCCTCTTGGCT 240
Query 241 CGAGCCGCCATCTCCGTCACTCTCACCAAGACTCTCGACTTAGCCTCATACCTCGCCAAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGCCGCCATCTCCGTCACTCTCACCAAGACTCTCGACTTAGCCTCATACCTCGCCAAT 300
Query 301 GTCACCACTCTCCAGCCGGAGAGCAACGAAGATGGTGCCCACCACCCAACCGCAGCCGCT 360
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 ATCACCACTCTCCAGCCAGAGAGCAACGAAGATGGTGCTCACCACCCAACCGCAGCCGCT 360
Query 361 GTTTTTCATGACTGCTTCGACAATCTTAAAGATGCGGTCGAAGAAATGAGAGGCTCGATG 420
|||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 361 GTTTTTCACGACTGCTTCGACAATCTTAAAGACGCGGTCGAAGAAATGAAAGGCTCGATG 420
Query 421 AAACAGATGAGGGAGCTGGTCTCGACTGGCTCGCTCGAGTCCTTCAGGTTCCAAATGAGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACAGATGAGGGAGCTGGTCTCGACTGGCTCGCTCGAGTCCTTCAGGTTCCAAATGAGT 480
Query 481 AACGTGCAGACGTGGCTCAGTGCGGCTTTAACCGATGAAGAGACTTGTACGGACGGGTTT 540
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 481 AACGTGCAGACGTGGCTCAGTGCGGCTTTAACTGATGAGGAGACTTGTACGGACGGATTT 540
Query 541 AAAGACATTCACGATGAGCCGAGGAAGGATGACATATGCGCACGGGTCGATGACGTCAAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 AAAGACATTCACGATGAGCCGAGGAAGGATGACATATGCGCACGGGTCGATGACGTTAAA 600
Query 601 AAGATGACTAGTAATGCGTTGGCTCTAGTTAATCGATGTGTTGATAAGGCGATCCATTGA 660
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 601 AAGATGACTAGTAATGCGTTGGCTCTAGTTAATCGATGTGTTGATAAGGCCATACATTGA 660
Query 661 GCATTCTATCA--ATTC--T---TCTTCtt-tt-tttttttt-ttAAACTCGAAAAAGAA 710
|||| ||||| |||| | | ||||| || |||||||| ||| || |||||||||
Sbjct 661 TCATTTTATCATTATTCACTAAATATTCTTCTTCTTTTTTTTCTTA--CTTGAAAAAGAA 718
Query 711 ATTATTGTTTAAATGTTTTTGGTTCTCACGCGTGCATGATAGAGATATAATAAGATAAGC 770
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 GTTATTGTTTAAATGTTTTTGGTTATCACGCGTGCATGATAGAGATATAATAAGATAAGC 778
Query 771 CTATTTGTTATTGGCTGTAATGAAATAGTGATATTATGTAGTTGTTAACGCTTTTTGTTT 830
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CTGTTTGTGATTGGCTGTAATGAAATAGTGATATTATGTAGTTGTTAACGCTTTTTGTTT 838
Query 831 GTCGAAATTACGAAAAGAATCAAGTGTGTGTAAAAAGAATTAGTAGTCTATTATTTCTT 889
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 GTCGAAATTACGAAAAGAATCAAGTGTGTGTAAAAAGAATTAGTAGTCAATTATTTCTT 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5