BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472592
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23330.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2710 0.0
> AT1G23330.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:8279588-8281891 REVERSE LENGTH=1702
Length=1702
Score = 2710 bits (1467), Expect = 0.0
Identities = 1618/1690 (96%), Gaps = 14/1690 (1%)
Strand=Plus/Plus
Query 1 ATGATTCCATGGTTGATGGTATCAGCTATACAGGTAGCAGAGCTATCTGTGAGCTCTGTT 60
||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1 ATGGTTCCATGGTTGATGGTATCAGCTATACAAGTAGTAGAGCTATCTGTGAGCTCTGTT 60
Query 61 GTTCATATGTTTTATGGGCTTTATATATTTAGCTCCGCCGTCGCCGGAGATCTTACTCAG 120
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTTCATATGTTTTATGGGCTTTACATATTCAGCTCCGCCGTCGCCGGAGATCTTACTCAG 120
Query 121 TCGTTGAGCGAGTCAATCTTCAAGCCCAAAGCCACCATTGAAGTCAAACAAATTGACCAA 180
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 121 TCGTTGAGCGAGTCAATCTTCAAACCCAAATCCACCATTGAAGTCAAACAAATTGACCAA 180
Query 181 GAAAAGACAAAAGACGTCAATGATTTGCCTCCCATTGTTTTGGTTCATGGGATTTTCGGA 240
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GAAAAGACAACAGACGTCAATGATTTGCCTCCTATTGTTTTGGTTCATGGGATTTTCGGA 240
Query 241 TTTGGCAAAGGAAGATTAGGTGGATTATCATACTTTGCTGGAGCAGAGAAGAAGGATGAG 300
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTTGGCAAAGGAAGATTAGGTGGTTTATCATACTTCGCTGGAGCAGAGAAGAAGGATGAG 300
Query 301 AGAGTGTTAGTGCCTGATTTGGGGTCTTTGACGAGTGTACACGATAGGGCTAGAGAACTG 360
|||||||||||||||||| |||| || ||||| ||||||||||||||||| |||||||||
Sbjct 301 AGAGTGTTAGTGCCTGATCTGGGATCATTGACTAGTGTACACGATAGGGCAAGAGAACTG 360
Query 361 TTTTATTATCTGAAAGGTGGATTAGTTGATTATGGTGAAGAACATAGTAAAGCTTGTGGG 420
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 361 TTTTATTATCTGAAAGGTGGGTTAGTTGATTATGGTGAAGAACACAGTAAAGCTTGTGGG 420
Query 421 CACTCTCAATTTGGTCGTTTTTATGAAAAAGGGGAATACCAAGAATGGGATGAAGATCAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACTCTCAATTTGGTCGTTTTTATGAAAAAGGGGAATACCAAGAATGGGATGAAGATCAT 480
Query 481 CCTATTCACTTTGTTGGTCATTCTGCTGGTGCTCAAGTTGTTCGTGTGTTGCAGCAAATG 540
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CCTATTCACTTTGTTGGTCACTCTGCTGGTGCTCAAGTTGTTCGTGTCTTGCAGCAAATG 540
Query 541 CTCGCTGACAAGATGTTTGAGGGTTATGAGAACACGAATGAGAACTGGGTGTTGAGTTTA 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 CTTGCTGATAAGATGTTTGAGGGTTATGAGAACACGAATGAGAACTGGGTGTTGAGTCTA 600
Query 601 ACATCTTTGTCAGGGGCATTAAACGGGACTACTCGAACCTACATCGATGGAATTCAGCCG 660
|| || |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGTCATTGTCAGGAGCGTTAAACGGGACTACTCGAACCTACATCGATGGAATTCAGCCT 660
Query 661 GAAGACGGGAAGTCCCTGAAACCTATATCACTGCTTCAGATTTGCAAACTTGGAGTCATA 720
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAGATGGGAAGTCCCTAAAACCTATATCACTGCTTCAGATTTGCAAACTTGGAGTCATA 720
Query 721 ATGTATGACTGGATTGACATTCCTTGGCTCAAATCCTATTACAATTTCGGGTTCGACCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGTATGACTGGATTGACATTCCTTGGCTCAAATCCTATTACAATTTCGGGTTCGACCAT 780
Query 781 TTCAACATGTCGAGAAAGAAGACAGGTGTGCGCGGCCTAGTCGATCTTCTTCTTGGAAAC 840
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 781 TTCAACATGTCGAGAAAGAAAACTGGTGTACGCGGCCTAGTCGATCTTCTGCTTGGAAAC 840
Query 841 GCAGGTCCTTTTGCTGCATCTGGAGATTGGATCTTGCCTGACCTCTCAATCCAGAGTTCA 900
||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||
Sbjct 841 GCAGGTCCTTTTGCTGCATGTGGAGATTGGATCTTGCCGGACCTCTCAATCCAGGGATCA 900
Query 901 ATGAAGCTAAACGCTAGTCTGCAGACTTTCCCAAACACGTTCTACTTCAGCTATGCGACT 960
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 ATGACGCTAAACGCTAGTCTGCAGACTTTTCCAAACACGTTCTACTTCAGCTATGCGACT 960
Query 961 AAGCGTACTACTAAACCTCTTGGAATGATGACTGTTCCTTCAGGCGTGATGGGAATCCAT 1020
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 961 AAGCGTACCACTAAACCTCTTGGAATGATGACTGTTCCTTCAGGTGTGATGGGGATTCAT 1020
Query 1021 CCTCTGCTTTTCATCCGCGTGTTGCAGATGAGTCAGTGGCAATTTCCTCGTGACATTCCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCTCTGCTTTTCATCCGCGTGTTGCAGATGAGTCAGTGGCAATTTCCTCGTGACATTCCT 1080
Query 1081 CTGCCTTATAAAGGCTACAGAGATGAAGATTGGCAGGACAATGATGGAGCACTGAACACA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGCCTTATAAAGGCTACAGAGATGAAGATTGGCAGGACAATGATGGAGCACTGAACACA 1140
Query 1141 ATATCCATGACTCACCCACGAATTCCGGTTGAACA-TCGTAGTCTCATTCTTCGTAGTGA 1199
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1141 ATATCCATGACTCACCCACGAATTCCGGTTGAACATTC-TAGTCTCATTCTTCGTAGTGA 1199
Query 1200 CTCAGACTGTCTCCCTCTCCTACCAGGCATTTGGTACTACAAGATCGTGGAGGCAGATCA 1259
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTCAGACTGTCTCCCTCTCCAACCAGGCATTTGGTACTACAAGATCGTGGAGGCAGATCA 1259
Query 1260 TATAATGTTCATTATAAACCGAGAGCGAGCAGGTGTGGAGTTCGATTTGATCTACGACAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TATAATGTTCATTATAAACCGAGAGCGAGCAGGTGTGGAGTTCGATTTGATCTACGACAG 1319
Query 1320 TATCTTTGAGCGGTGCAGGAAACATGTATTCAGGAAGGCTCCTCAGACATTGCCTAACGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TATCTTTGAGCGGTGCAGGAAACATGTATTCAGGAAGGCTCCTCAGACATTGCCTAACGA 1379
Query 1380 AGCTCAACACCATGAAAGAGGAGACCAAGAAGAATAGAGAG-CCCAAAATGTCATCAACA 1438
|||||||||||| |||||||||| ||||||||| ||||||| |||||| ||| |||||||
Sbjct 1380 AGCTCAACACCAGGAAAGAGGAGGCCAAGAAGAGTAGAGAGACCCAAA-TGTGATCAACA 1438
Query 1439 AATGTATAGCTTCGTTTGTA-CAACAAGAATCCCCAAAGCTC-ATGATTTT-GGTGTCTC 1495
|||||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||||||
Sbjct 1439 AATGTATAGCTTCGTTTGTAACAAGAAGAATCCCCAAAGCTCGA-GATTTTTGGTGTCTC 1497
Query 1496 CTAACTCTGACCAGCGTCTTAAGATTACTGGATTAGGATTTGTAATTGACAGTGTTCACT 1555
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1498 ATAACTCTGACCAGCGTCTTAAGATTACTGGATTAGGATCTGGAATTGGCAGTGTTCACT 1557
Query 1556 ATGTGTATGATAATATCCTATTCGAAGATAACGTTTCCATGTTGCCTTGAATTCTGTTAG 1615
|| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1558 AT-T-TATGATAATATCCTATTCGAAGATAATGTTTCCATTTTGCCTTGAATTCTGTTAG 1615
Query 1616 AAATCTCAA-GTCTAGTATAACATGAGA--CTAAACTAGTGTATAAAAGATATGAATTCA 1672
||||||||| | |||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1616 AAATCTCAAAG-CTAGTATAACATGAGAGACTAAAGTAGTGTATCAAAGATATGAATTCA 1674
Query 1673 TCTAGCTATT 1682
||||||||||
Sbjct 1675 TCTAGCTATT 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83132102520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5