BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472601
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23390.1 | Symbols: | Kelch repeat-containing F-box family ... 1552 0.0
> AT1G23390.1 | Symbols: | Kelch repeat-containing F-box family
protein | chr1:8309112-8310649 REVERSE LENGTH=1538
Length=1538
Score = 1552 bits (840), Expect = 0.0
Identities = 1085/1201 (90%), Gaps = 25/1201 (2%)
Strand=Plus/Plus
Query 10 GGAGGAGAAG-AAGTTTCCATTGACGGAGACATACTCGAATCAATCCTCTCCTATTTACC 68
|||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 56 GGAGAAGAAGAAAG-TTCCATTGACGGAGACATACTCGAGTCAATCCTCTCCTATTTACC 114
Query 69 ACTCCTCGACCTCGATTCCGCTTGCCAAGTGTCCAAACCATGGAACCGCGCCGTCTTCTT 128
|||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 115 ACTCCTAGACCTCGATTCCGCTTGCCAAGTCTCCAAATCATGGAACCGCGCCGTCTT-TT 173
Query 129 -CTCCCTCCGCCGCCTTAAATCCATGCCGTGGTTGTTCGTTTACAATCAGAGAAATTCTC 187
||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 174 ACTCCCTCCGCCGCCTTAAAACCATGCCGTGGTTGTTCGTCTACAACCAGAGAAATTCTC 233
Query 188 CGCCGTACACCATGCCGGCGATGGCGATGGCTTATGATCCGAAGT-CGGGTGAATGGATC 246
|||||||||||||| || |||||||||||||||||||||| |||| || | | ||||||
Sbjct 234 CGCCGTACACCATGGCGACGATGGCGATGGCTTATGATCCCAAGTCCGAG-GCCTGGATC 292
Query 247 GAGCTCAAAAACGTATCATCATCTCCCGTCGAACACGTCTCCGTTGCTCGATCTTCTCAC 306
|||||||| | || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 293 GAGCTCAACACCG---CATCATCTCCCGTCGAACACGTCTCCGTTGCTCGATCCTCTCAC 349
Query 307 TCCGCGTTGCTCTACGCTTTATCTCCGGCGAAATTCTCTTTCTCAATCGACGCGTTTCAT 366
||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 350 TCCACGTTGCTCTACGCTTTATCTCCGGCGAGATTCTCTTTCTCAACCGACGCGTTTCAT 409
Query 367 CTGACTTGGCGACACGTGGCACCACCGAGAGTGTGGAGGATCGATCCAATCGTCGCCGTC 426
|||||||||| |||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct 410 CTGACTTGGCAACACGTGGCACCGCCGAGAGTTTGGAGGATCGATCCAATCGTGGCTGTA 469
Query 427 GTTGGACGGAACCTGATCGTTGCCGGAGGTGTGTGCGATTTCGAGGAGGATAGATTTGCC 486
|| ||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 470 GTCGGACGGAGCCTGATTATAGCCGGAGGTGTGTGCGATTTCGAGGAGGATAGATTCGCC 529
Query 487 GTGGAGTTGCTGGATGTCGAATCCAGCGACGGCGAGTGGGAGAGATGCGAATCGATGCCG 546
|||||| || | || |||||||| | ||||| | ||||||||||||||||||||||||
Sbjct 530 GTGGAGCTGTTCGACATCGAATCCGGAGACGGAGCGTGGGAGAGATGCGAATCGATGCCA 589
Query 547 GATTTTCTCTACGAATCCGCGTCCG-CCACGTGGCTTTCCGTCGCGGTGAGTTCGGAGAA 605
|||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 590 GATTTTCTCTACGAATCCGCGT-CGTCCACGTGGCTTTCCGTAGCGGTGAGTTCGGAGAA 648
Query 606 GATGTACGTGACGGAGAAGAGATCAGGCGTTACGTGTAGTTTCGATCCAGAAACTAGATC 665
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 649 GATGTACGTGACGGAGAAGAGATCAGGCGTTACGTGTAGTTTCAATCCAGTAACTAGATC 708
Query 666 GTGGACAAAGCTTCCCGATCTTTGTCCCGGCGAGTATAGTTTATACTCACGTTCGATTGG 725
|||||| ||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 709 GTGGACGAAGCTTCTCGATCTCTGTCCCGGCGAGTGTAGCTTATACTCACGTTCGATTGG 768
Query 726 ATTCTCCGGTAACCGTCTAATCATGGCTGGGATCATCGGAGACGAGGATAATCCGACGGG 785
|||||||| ||| ||| |||| |||||||||||||||||||| || |||||||||||||
Sbjct 769 ATTCTCCGTTAATCGTTTAATTATGGCTGGGATCATCGGAGATGAATATAATCCGACGGG 828
Query 786 ACTCGAACTATGGGACGTTATAG-TCTCCGACGAATCGCCGATGAATCTGAAATTCGAAT 844
| ||||||| ||||| ||||||| | || |||||||||| || | |||||||||| |
Sbjct 829 AATCGAACTGTGGGAAGTTATAGAT-TCTGACGAATCGC--AT---T-TGAAATTCGAGT 881
Query 845 CGATTGGATCTATGCCAAAGCCGTGTTTCGATAAGCTCAGAGGAACTGATTCTGATTGGC 904
|||| ||||||||||| || ||| ||| || || || ||||| | | ||||||||||||
Sbjct 882 CGATCGGATCTATGCCTGAGACGTATTTGGAGAAACTAAGAGGGATTAATTCTGATTGGC 941
Query 905 CGTTAACGTCCATAGCGTTGAACACGGTGGGAGATATGGTTTATATACACGATGCGGCGG 964
|||||||||| |||| ||||||| |||||||||||||||||||| |||| | ||||||||
Sbjct 942 CGTTAACGTCGATAGTGTTGAACGCGGTGGGAGATATGGTTTATGTACATGGTGCGGCGG 1001
Query 965 AGAACGGCGGAGATATAGTGGCGGCGGAGATTGATGGAGGAAAGCTTTGTAAGTGGAGAA 1024
||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1002 AGAACGGCGGAGAGATTGTTGCGGCGGAGATTGAAGGAGGAAAGCTTTGTAAGTGGAGGA 1061
Query 1025 CTTTGCCAAACGCAGACGCTACTTGGATTAATAAAAGTCACGCGGGTGAGAGAGTTATCG 1084
||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||
Sbjct 1062 CTTTGCCAAACGCAGACGCTACTTGGA--AA-AAAAGTCACGCGGCTGAGAGAGTAATCG 1118
Query 1085 TTGCGTGTTCAAACGTTGGTTTTAGCGATTTGAAACTTGCGTTTAGGAATCATTTGAGTT 1144
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1119 TTGCGTGTTCAAACGTTGGTTTTAGCGATTTGAAACTTGCGTTTAGGAATAATTTGAGTT 1178
Query 1145 T-CTC--AACGTCAACATATTGAATGTAATCGTGTCCGTTAAATTCAAAGTTTCTAGTCA 1201
| ||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1179 TTCTCTCAACGTCAAAATATTGAATTTAATCGTGTCCGTTAAATTCAAAGCTTCTAGTCA 1238
Query 1202 C 1202
|
Sbjct 1239 C 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5