BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472651
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23890.2 | Symbols: | NHL domain-containing protein | chr1:... 1888 0.0
> AT1G23890.2 | Symbols: | NHL domain-containing protein | chr1:8438900-8440866
REVERSE LENGTH=1266
Length=1266
Score = 1888 bits (1022), Expect = 0.0
Identities = 1190/1269 (94%), Gaps = 19/1269 (1%)
Strand=Plus/Plus
Query 1 AGCAAAAATAAGTAACACAACAC-AG-T---C-G--CTTTCTC-TTCATTCTCATCGATT 51
||||||||||||||||||||||| || | | | | || | ||| | ||| ||||||
Sbjct 1 AGCAAAAATAAGTAACACAACACAAGTTACACAGAACAGTCGCTTTC-TCCTC-TCGATT 58
Query 52 TTGACATGGCTTGGGGATTGTCGTCCGTGTCTCTCTTCTTGTTCGTCGTTTTCAATCTGG 111
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTGACATGGCTTGGGGATTTTCGTCCGTGTCTCTCTTCTTGTTCGTCGTTTTCAATCTGG 118
Query 112 TGAGTGGTAAGATAGTTTTAGAAGATGGGTACGAGGTCACAACAGTGGTCGACGGTCATA 171
||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||
Sbjct 119 TGAGTGGTAAGATAGTTTTAGAAGAAGGGTACGAAGTCACAACGGTGGTCGATGGCCATA 178
Query 172 AGTCTGGTCTGAATCCATACACGATTCATGCTTTACCTGGATCTTCTAATCTCATCGTCC 231
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 179 AGTCTGGTCTGAATCCATACACGATTCATGCTTTACCAGGATCTTCTAATCTGATCGTCC 238
Query 232 TTGATTCTTCCGGCAGTACATTCTACACTACTTCATTTCCTTTGTCCTTTGATAGTGTGA 291
|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 239 TTGATTCTTCCGGCAGTACATTTTACACTACTTCCTTTCCTTTGTCCGTTGATAGTGTGA 298
Query 292 TAAACCGGTTTGCTGGGGATGGGACTTCGGGTTATGTAGATGGTAAAGCTGGTAACAGCC 351
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 299 TAAACCGGTTTGCTGGGGATGGGAGTTCGGGTCATGTAGATGGTAAAGCTGGTAACAGCC 358
Query 352 GGTTCAACAAACCCCGTGGTTTTGCTATCGATGCTAAAGGGAATGTCTATGTTGCTGATA 411
|||||| ||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 359 GGTTCAGCAAACCCCGTGGTTTTGCTGTGGATGCTAAAGGGAATGTTTATGTTGCTGATA 418
Query 412 GGAGCAATAAAGCTATACGCAAGATCAGCTCTTCAGGTTATGTTACCACCATTGCTGGAG 471
||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 419 AGAGTAATAAAGCTATACGGAAGATCAGCTCTTCAGGTTCTGTAACCACCATTGCTGGAG 478
Query 472 GGATCTCAAAAGAATTTGGACACAGAGATGGACCTGCACAGAATGCAACTTTCTCTAGCG 531
|||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 GGATCTCAAAGGCATTTGGACACAGAGATGGACCTGCACAGAATGCTACTTTCTCTAGCG 538
Query 532 ATTTCGAGATAACTTTTGTTCCTCAAAGATGTTGCTTGCTTGTTTCTGATCATGGAAATG 591
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 ATTTCGAGATAACTTTTGTTCCTCAAAGATGTTGTTTGCTTGTTTCTGATCATGGAAATG 598
Query 592 AAATGGTTCGCCAGATAAATCTTAAGGAGGAGGATTGCCTCGAAAGCTCTCATTCTACTT 651
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 599 AAATGATTCGCCAGATAAATCTTAAGGAGGAGGATTGCCTCGAAAACTCTCATTCTAATT 658
Query 652 TAGGGACATATTCTCTTTGGTCGATAGGGATTTTCCTTTCATGCATTCTCGGGGTAGCCA 711
| |||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct 659 TGGGGACATACTCTCTTTGGTCAATAGGGATTGTCCTTTCCTGCATTCTCGGGGTAGCCA 718
Query 712 TTGGATTTGCTGTCCGCCCTTACATCATTCGTCATGAAGAAGTGAACCACCTCTCGTTCA 771
||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 719 TTGGATTTGCTGTTCGCCCTTACGTCATCCGTCATGAAGAAGTGAACCACCTCTCGTTCA 778
Query 772 TCATGACATGGAAGCTTCTCCTAACCAAATTGGGGGAACAAGTTCTGACCTTCTTCTCCT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCATGACATGGAAGCTTCTCCTAACCAAATTGGGGGAACAAGTTCTGACCTTCTTCTCCT 838
Query 832 ACATTAGAAACCGAGTTGCTGAATCAACTGTTTATTCGGTACTAAGTAGACTAGTTATGA 891
|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 839 ACATTAGAAACCGAGTTGCTGAATCAACCGTTTATTCAGTATTAAGTAGACTAGTTATGA 898
Query 892 TGATCGTGTCTCACCTTTCCCTCATGTATTCCGCCCTAAGTAGATTAGTTAGTTCGATGG 951
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 899 TGATCGTGTCTCACCTTTCCCTCATGTATTCCGCCCTAAGTAGTTTAATTTGTTCGATGG 958
Query 952 TATTTAGCCTTTTCTTCATGTGTCAACCCAATAATGTAGCTATTTTAGACAAGACA-TGC 1010
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 959 TATCTAGCCTTTTCTTCATGTGTCAACCCAATAATGTAGCTATTTTAGACAAAACAGT-C 1017
Query 1011 TCTGTATCTGATCCCAAGAGTCCAGGTTGCGGCAACCCAAAGCCGCCGCTTTCACTGAAA 1070
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 TCTGTGTCTGATCCCGAGAGTCCAGGTTGCGGCAACCCAAAGCCGCCCCTTTCACTGAAA 1077
Query 1071 CCCTCTGATGATCATATGGACCTAATAAGCTTTGATGATGAACAAGAACCT------GAC 1124
||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1078 CCCTCTGATGATCTTATTGACCTAATAAGCTTTGATGATGAACAAGAACCTAACAATGAC 1137
Query 1125 AAAGATTGCAGTAATGAAGAGACTCTTCCTCATGCAACCATAGATGACATTATAAAGGTT 1184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAAGATTGCAGGAATGAAGAGACTCTTCCTCATGCAACCATAGATGACATTATAAAGGTT 1197
Query 1185 CATGTTGAAGGATTTTCAAAGATGGCTGAAAAAGATGCTGCAACTCATGGTTCTTCATCT 1244
|||||||||| ||||||||||||||||||| ||||| ||| || ||||||||||||||||
Sbjct 1198 CATGTTGAAGAATTTTCAAAGATGGCTGAAGAAGATACTGTAATTCATGGTTCTTCATCT 1257
Query 1245 ACTGAGTAG 1253
|||||||||
Sbjct 1258 ACTGAGTAG 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61596068715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5