BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472739
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transpor... 1286 0.0
> AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport
v-SNARE family protein | chr1:9215901-9218010 FORWARD LENGTH=1088
Length=1088
Score = 1286 bits (696), Expect = 0.0
Identities = 803/853 (94%), Gaps = 14/853 (2%)
Strand=Plus/Plus
Query 127 AAGATCGAAACAT-TGAATTGAAGAAGATGAGCGACGTATTTGAAGGGTACGAGCGCCAA 185
||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 180 AAGATCGAAACATAT-AATT---GAAGATGAGCGACGTATTTGAAGGGTACGAGCGTCAA 235
Query 186 TACTGCGAGCTCTCAACCAATCTCTCCAGAAAATGTCACTCTGCATCAGTTCTCTCCGAC 245
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct 236 TACTGCGAGCTCTCAACCAATCTCTCTAGAAAATGTCACTCTGCATCGGTTCTCTCCAAC 295
Query 246 GGAGAAGAGAAGAAGGGGAAGATTGCTGAGATTAAGTCTGGAATAGAAGAAGCTGATGTC 305
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 296 GGAGAGGAGAAGAAGGGGAAGATTGCTGAGATCAAGTCTGGAATAGACGAAGCTGATGTC 355
Query 306 TTGATCCGGAAAATGGATCTTGAGGCTAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGT 365
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 356 TTGATCCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCGAGTGCTAAAGCTGTGTGT 415
Query 366 CTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGAAGAAGGAATTCAAACGA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTTTCTAAACTAAGAGAGTATAAATCTGATCTGAACCAATTGAAGAAGGAATTCAAACGA 475
Query 426 GTCTCGTCCGCAGATGCTAAGCAGTCTTCTCGTGAAGAATTGATGGAATCGGGAATTGCA 485
||||| |||||||||||||||| |||||| |||||||| ||||||||||| ||||| ||
Sbjct 476 GTCTCTTCCGCAGATGCTAAGCCGTCTTCCCGTGAAGAGTTGATGGAATCCGGAATGGCG 535
Query 486 GATCTGCATGCAGTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGGAGAGGCTT 545
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 GATCTGCATGCAGTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTT 595
Query 546 GACCAATCCAGCGACCGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTT 605
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GACCAATCAAGTGACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTT 655
Query 606 GGCATCTCAATTGTCCAAGATTTGAGTCAGCAACGACAAACCCTCCTTCATGCGCACAAC 665
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 656 GGCATCTCAATTGTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAAC 715
Query 666 AAGCTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCTATGTCA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AAGCTTCATGGTGTGGATGACGCCATTGACAAGAGCAAGAAGGTGTTGACGGCTATGTCA 775
Query 726 AGAAGAATGACAAGGAACAAGTGGATTGTTACTTCGGTAATCGTGGCTCTCATTCTCGCC 785
|| |||||||| |||||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct 776 AGGAGAATGACTAGGAACAAATGGATCATTACATCGGTAATCGTGGCTCTCGTTCTCGCC 835
Query 786 ATCATTTTGATCATCTCATACAAGCTTTCTCATTAATATACTaaaaaaaCATAATTCATC 845
||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 836 ATCATCTTGATCATCTCATACAAGCTTTCTCATTAATATACTCAAAAAACATTATTCATC 895
Query 846 GTGATTGTGTGTATATAT--GATGGTTGATTC-CTTTGTAATGGCCCAAGTGTTTACTTG 902
|||||||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 896 GTGATTGTGTATATATATATGATGGTTGATTTACTTTGTAATGGCCCAAGTGGTTACTTG 955
Query 903 TATTTC-AAGTACGATGTGTGTATTGAAGTGGCAACACTTT-AACATTCATAATTAAGAT 960
||||| ||||||||||| |||||||||||||||||||||| ||||||||||| | |
Sbjct 956 TATTTTTAAGTACGATGTTTGTATTGAAGTGGCAACACTTTTAACATTCATAAG---G-T 1011
Query 961 TTCCCAAGTCTTT 973
|||||||||||||
Sbjct 1012 TTCCCAAGTCTTT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5