BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472790
Length=2577
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26270.1 | Symbols: | Phosphatidylinositol 3- and 4-kinase ... 3845 0.0
> AT1G26270.1 | Symbols: | Phosphatidylinositol 3- and 4-kinase
family protein | chr1:9089524-9092457 REVERSE LENGTH=2605
Length=2605
Score = 3845 bits (2082), Expect = 0.0
Identities = 2436/2600 (94%), Gaps = 51/2600 (2%)
Strand=Plus/Plus
Query 1 GAGGTAGGAAGAGaaaaaaaaaaCAGCTTCTTCTTCAAAGCGAGACCTATCTGAGTCGAC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGATAGGAAGAGAAAAAAAAAACAGCTTCTTCTTCAAAGCGAGACCTATCTGAGTCGAC 60
Query 61 TCGTAACGAGTTGA-TTTCTTTTGTTTTCTTCTCTACTGGTTTCGCTTTTCGAGCTTCTC 119
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGTAACGAGTTGATTTTTTTTTGTTTTCTTCTCTACTGGTTTCGCTTTTCGAGCTTCTC 120
Query 120 GTCTCCGTTGTTCGTCAAATCTAGCTCATTGATCCGATATCGATTGTTTTCTCTCTCGCC 179
||||||||| |||| ||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 121 GTCTCCGTTAATCGTTAAATCTAGCTCATTGATCCGATATCCATTG-TTT-TCTCTCGCC 178
Query 180 GGCGCGTCATTGTCATACGTCGTCCGAGTTCTGTAGATTGTTTCAACTATGGAAGCTCGT 239
|||||||||||||||| |||||| ||||||| | |||||||| ||||||||||||||||
Sbjct 179 GGCGCGTCATTGTCATTCGTCGT-CGAGTTC--T-GATTGTTTTAACTATGGAAGCTCGT 234
Query 240 CGTGGAGTCTAATTCATTATTGAG-TTCGAGGATTGGTTCGG-T--T-G-----T--ACT 287
|||||||||||||||||||||||| || |||||||||||||| | | | | ||
Sbjct 235 CGTGGAGTCTAATTCATTATTGAGCTT-GAGGATTGGTTCGGTTGATGGTCTTTTCCACC 293
Query 288 GCTT-AAAGAGTTGTATCA-TTTCAACATCTGGTCTTGGATTTAGTTATCTGTCCT-AAA 344
| || |||||||| | ||| ||| |||||||||| |||||| |||| | |||| | |||
Sbjct 294 GTTTGAAAGAGTTCT-TCAGTTT-AACATCTGGTGTTGGATCTAGTCACCTGTATTGAAA 351
Query 345 GGTGGGAAGAAACTATCTTGTGCAGCCATCTTCGAC-TTTTTTGT-CTGATTTGATCTCC 402
|||||||||||||| ||||||||||||| ||| | ||| | |||| |||||
Sbjct 352 -GTGGGAAGAAACTAACTTGTGCAGCCATAGTCG-CAAAGGCTGTGATTTTTTG-TCTCC 408
Query 403 ACACTCATGTCACGTAAGCTTGACAGTCCTGTTCAGACACAAATGGCTGTGGCACTAGTG 462
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 409 ACACTCATGTCACGTAAGCTTGACAGTCCTATTAAGACACAAATGGCAGTGGCACTAGTG 468
Query 463 AAGAGCCCCCTGAGCGGGGAATTTCGTGAATTTAACAAGGTAGGAATGAAGTCACCTGTG 522
||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 469 AAGAGTCCCCTGAATGGGGAATTTCGTGAATTTAACAAGGTAGGAATGAAGACACCTGTG 528
Query 523 GGTCGTAGGCGGGTTTTTGTTCAAACGGAGACTGGTTGTGTACTGGGGTTGGAGTTGGAT 582
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 529 GGTCGTAGGCGGGTTTTTGTTCAGACAGAGACTGGTTGTGTACTGGGGTTGGAGTTGGAT 588
Query 583 CGTAGTGATAATGCGCACACAGTGAAAAGGAAGTTGCAGGTTGCTCTTAATTTCCCCATT 642
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 589 CGTAGTGATAACGCGCACACTGTGAAAAGGAAGTTGCAGGTTGCTCTTAATTTCCCCATT 648
Query 643 GAGGAAAGCTCGTTGACCTTCGGGGATTTGGTGCTTAAAAATGATCTTACAGCTGTTAGA 702
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 GAGGAAAGCTCGTTGACCTTTGGGGATTTGGTGCTTAAAAATGATCTTACAGCTGTTAGA 708
Query 703 AGTGATGCTCCTCTTCTTCTAACTCGGAACAACTTTCATAGGAGTTCATCGACTCCATGT 762
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 709 AGTGATTCTCCTCTTCTTCTAACTCGGAACAACTTTCATAGGAGCTCATCGACTCCGTGT 768
Query 763 CTTTCCCCAATGAGGGCTGACCTTCAGCAGCGTAGAGATGAGAGCAGTCCTATTGAAATT 822
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 769 CTTTCCCCAATGAGGGCTGACCTTCAGCAGAGAAGAGATGAGAGCAGTCCTATTGAAATT 828
Query 823 CTTGGGAACTCTGTTTCTTTCTCTTTTATGAGGCAAATGGCGAAGGATATTACAAAAGCA 882
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 829 CTTGGGAACTCTGTTTCTTTCTCTTTCGTGAGGCAAATGGCGAAGGATATTACAAAAGCA 888
Query 883 GTGAAGAAGGGCATTGATCCAGTTGCTGTTCATAGTGGGCTTGGAGGGGCCTATTACTTC 942
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 889 GTGAAGAAGGGCATTGATCCAGTTGCTGTTAATAGTGGGCTTGGAGGGGCCTATTACTTT 948
Query 943 AAGAACAGCCGCGGAGAGAGTGTTGCAATTGTTAAACCAACTGATGAGGAGCCTTTTGCT 1002
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 949 AAGAACAGCCGTGGAGAGAGTGTTGCAATTGTTAAACCAACTGATGAGGAGCCTTATGCT 1008
Query 1003 CCTAATAACCCGAAAGGTTTTGTTGGAAAGGCGCTTGGACAACCTGGGTTGAAGCGTTCG 1062
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1009 CCTAATAACCCAAAAGGTTTTGTTGGTAAGGCGCTTGGACAACCTGGGTTGAAGCGTTCA 1068
Query 1063 GTGCGGGTTGGGGAAACAGGCTACAGAGAAGTTGCGGCTTATCTTCTTGACAAGGAACAT 1122
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1069 GTACGGGTTGGGGAAACAGGCTACAGAGAAGTTGCGGCTTATCTTCTCGACAAGGAGCAT 1128
Query 1123 TTTGCAAATGTTCCTTCCACTGCTCTTGTGAAGATTACTCACTCTATCTTTAATGTCAAC 1182
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TTTGCAAATGTTCCTCCCACTGCTCTTGTGAAGATTACTCACTCTATCTTTAATGTCAAC 1188
Query 1183 GATGGAGTGAAGGCAAGCAAGCCTATGGAGAAGATGTTGGTGAGCAAGATTGCTTCCTTG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GATGGAGTGAAGGCAAGCAAGCCTATGGAGAAGATGTTGGTGAGCAAGATTGCTTCCTTG 1248
Query 1243 CAGCAGTTCATATCTCATGATTATGATGCTAGCGAGCACGGAACATCCAATTTCCCTGTT 1302
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1249 CAGCAGTTCATACCTCATGATTATGATGCTAGCGAGCACGGAACATCAAATTTCCCTGTT 1308
Query 1303 TCAGCTGTACACCGTATAGGGATTCTTGACATCAGAATCTTAAATACAGACAGGCACTCT 1362
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1309 TCAGCTGTACACCGTATAGGGATTCTTGACATCAGAATCTTAAATACAGATAGGCACTCA 1368
Query 1363 GGGAACCTTCTGGTTAGGAAACTGGATGGTGATGGTATGTTTGGCCAGGTGGAGCTAGTT 1422
||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GGGAACCTTTTGGTCAAGAAACTGGATGGTGATGGTATGTTTGGCCAGGTGGAGCTAGTT 1428
Query 1423 CCAATCGATCATGGTCTTTGCTTGCCTGAAACTCTAGAGGACCCTTACTTTGAGTGGATT 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 CCAATCGATCATGGTCTTTGCTTGCCTGAAACTCTAGAGGACCCTTACTTTGAGTGGATT 1488
Query 1483 CATTGGCCACAGGCATCGATCCCATTCTCTGAAGATGAACTGAAGTACATAGCGAATCTG 1542
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1489 CATTGGCCACAGGCATCGATCCCATTCTCTGAAGATGAGCTGAAGTACATAGCAAATCTG 1548
Query 1543 GATCCCTTT-GGAGATTGTGAGATGCTGCGGAGGGAACTTCCAATGGTAAGAGAGGCCAG 1601
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1549 GATCC-TTTAGGAGATTGTGAGATGCTGCGGAGGGAACTTCCAATGGTACGAGAGGCCAG 1607
Query 1602 TCTCCGTGTTCTAGTTCTCTGCACAATTTTTCTCAAGGAAGCTGCTGCTAATGGCCTATG 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1608 TCTCCGTGTTCTAGTTCTCTGCACAATTTTTCTCAAGGAAGCTGCTGCTAATGGCCTTTG 1667
Query 1662 TTTGGCTGAAATTGGTGAGATGATGACTAGAGAGGTTCGTCCTGGAGATGAGGAGCCGAG 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TTTGGCTGAAATTGGTGAGATGATGACTAGAGAGGTTCGTCCTGGAGATGAGGAGCCGAG 1727
Query 1722 TGAGATTGAAGTGGTTTGTCTTGAGGCTATGAGTTTGATAGGAGAGAAGGAAGCTGAGTC 1781
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1728 TGAGATTGAAGTGGTTTGTCTTGAGGCTATGAGTTTGATAGGAGAGAAAGACGCTGAGTC 1787
Query 1782 ACCAAGATCAGACTTGGGAAGTGAATCAAGTGATGTTGAATTCCAGTTCGATATAGATTG 1841
||||||||||||||||||| ||| | | | || |||||||||| |||||||||||
Sbjct 1788 CCCAAGATCAGACTTGGGAAATGA-T-A--T--TG---AATTCCAGTTTGATATAGATTG 1838
Query 1842 TGAGGAAGCAACTGATTGTACaaaaaaaCTAGCATTCCCACTCGGACTCACTTTTGGAAA 1901
|||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1839 TGAGGAAGTAACTGATTGTACGAAAAAACTAGCATTACCACTCGGACTCACGTTTGGAAA 1898
Query 1902 TGCTCGTAGTCAGTTGTCAaaggtggaagaaacaacagagca-ggag--gaagaagaaga 1958
||||||| |||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 1899 TGCTCGTGGTCAGTTGTCAAAGGTGGAAGAAACAACAGAGGATGGGGAAGAAGAAGAAGA 1958
Query 1959 agaagacaaagaggaggaagagaatgacagagCTGATCTAGAGAAAATGCCGACAATTAC 2018
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1959 AGAAGACAGAGAGGAGGAAGAGAATGACAGAGCTGATCTAGAGAAAATGCCGACGATTA- 2017
Query 2019 CAAGCTTTCAATGTCTCTCAAAAGCACTCTTCTTGGTGAGAAGAGCCAGAAGTATCAGAA 2078
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2018 -A-GCTTTCAATGTCTCTCAAAAGCACTCTTCTTGGTGAGAAGAGTCAGAAGTATCAGAA 2075
Query 2079 ACACCCAGGAGCAAGAGTGGAGAGCGCATATGCATCATCTGCGCACAGGAGTGCAGATGA 2138
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 2076 ACACCCAGGAGCAAGAGTGGAGAGCGCATATGCATCATCTGCTCACAGAAGTGCAGACGA 2135
Query 2139 ACAGATCCCATCAAGCACAAGCTTCGTGAAGCTGTCCGATATGAGTGAAGAGGAGTGGAC 2198
|||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 2136 ACAGATCCCATCAAGCACAAGCTTTGTGAAGCTGTCGGATATGAGCGAAGAAGAGTGGAC 2195
Query 2199 GATTTTCCTGGAGAAATATCAAGAGCTGCTTTATTCGGCAATTGAAAAGCGCAAGTCCAT 2258
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||
Sbjct 2196 GATTTTCCTGGAGAAATATCAAGAGCTGCTTTATCCAGCCATTGAAAAGCGCAAGTCGAT 2255
Query 2259 AACTTTAGGACAGAAGCAGAGGCAGAGGCTGGGGACTTCTTGTCAGTTTTGagaagactg 2318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 AACTTTAGGACAGAAGCAGAGGCAGAGGCTGGGGACTTCTTGTCAGTTTTGAGAAGACTG 2315
Query 2319 aagaagaagaagaagaaTAAAAGGATCGTGTAAAAGTCGTGTTTCTAAGGGCTTTGCTTA 2378
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2316 AAGAAGAAGAAGAAGAATAAAAGGATCGTGTAAA-GTCGTGTTTCTAAGGGCTTTGCTTA 2374
Query 2379 GACTGGATTGGTCGAAACACGTAAAGGCGAAGAGAGATGAGTGGAATGGATGTAGTGTAA 2438
|||||||||| | ||||| |||||||| ||||| | |||||||||||||| ||||||||
Sbjct 2375 GACTGGATTGTTGGAAACGCGTAAAGGTGAAGATA--TGAGTGGAATGGATTTAGTGTAA 2432
Query 2439 ATATTCGTTGGTTACTTTCAGCTTTTAGTGTGTAGGAGACTCGAGGGATGAAGAGAAATC 2498
|||||||||||||||| |||||||||||| || ||||| |||||| |||||||||||||
Sbjct 2433 ATATTCGTTGGTTACTCTCAGCTTTTAGTATGGAGGAGTCTCGAGAGATGAAGAGAAATT 2492
Query 2499 AGTCATTTGTTTCTTTTGTCATTTTGTTTTAACTTCTTGAACTCTTTTGTTATATAAATA 2558
||||||||||||| |||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 2493 AGTCATTTGTTTCGTTTGTCATTTTGTTTTAACTTCTTAAAATCTTTTGTGATATAAATA 2552
Query 2559 ATTTGTAGATGTG-AAAAAA 2577
| |||||||| || ||||||
Sbjct 2553 ACTTGTAGATTTGGAAAAAA 2572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127925704650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5