BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472805
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26120.1 | Symbols: ICME-LIKE1 | alpha/beta-Hydrolases super... 2619 0.0
> AT1G26120.1 | Symbols: ICME-LIKE1 | alpha/beta-Hydrolases superfamily
protein | chr1:9028395-9031485 REVERSE LENGTH=1775
Length=1775
Score = 2619 bits (1418), Expect = 0.0
Identities = 1592/1673 (95%), Gaps = 24/1673 (1%)
Strand=Plus/Plus
Query 1 GGATCAGGAGGAAGTGAGAAAAAATGCCGTCGCAGATTCTCCAAATCT--CA-CATCTTC 57
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 61 GGATCAGGAGGAAGTGAGAAAAAATGCCGTCGCAGATTCTCCAAATCTCACATCATCTTC 120
Query 58 CACCTAAATCTTCACCATCCACGGAAATGATGTTCAAGTCTTTCATTTACGATGATCCTT 117
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CACCTAAATCTTCACCATCGACGGAAATGATGTTCAAGTCTTTGATTTACGATGATCCTT 180
Query 118 CAACGACCCTTCTTTCTTCTTCTTCTCGATTTTGTGATGACCACCACATCATTTCTGCTA 177
| |||| | | |||| || ||||||||| ||||||||||||||| ||||||| |||
Sbjct 181 CTACGA--C--C---CTTC-TC-TCTCGATTTGGTGATGACCACCACACCATTTCTTCTA 231
Query 178 CCGTTAAGCCTCTCCTCTCCCGCTCTTCCAGCTACAACGGCGGCGTCACGGCGAAGAAGA 237
||||||||||||||||||||||||||||||||||||||||| || | | ||||| |
Sbjct 232 CCGTTAAGCCTCTCCTCTCCCGCTCTTCCAGCTACAACGGC-ACGGC-C-ATGAAGACGT 288
Query 238 CGTCTTCGTCGTCTGGTGGTGGGTTAACTGGTTGGTATCAGAATAGATGGCGACGATCTA 297
| ||||| || |||| |||||| || ||||||||||||||||||||| | ||||||||||
Sbjct 289 CTTCTTCTTCTTCTGCTGGTGGATTTACTGGTTGGTATCAGAATAGACGCCGACGATCTA 348
Query 298 ACAGCGATAACTGTCTCTCTGCGTTTCCCGATGGTACTAATGGAA---CCGACGGTGGTA 354
|||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 349 ACAGCGATAACTGTCTCTCTGCGTTTTCCGATGATACTAATGGAACCGCCGACGGTGGTA 408
Query 355 GTAATAGCGGCGACCGTCAAACTACTATTGGCCAGGAGGTTGGCCACGCCGCTGCAGAGA 414
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 409 ATAATAGCGGCGACCGTCAAACTACTATTGGTCAGGAGGTTGGCCACGCCGCTGCAGAAA 468
Query 415 CGTTTTTGTTGACTCGTCTTTGTTTGAAGCTCCTTAGCTATCTTGGGGTAGGTTATAGAT 474
| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 469 CATTCTTGTTGACCCGTCTTTGTTTGAAGCTCCTAAGCTATCTTGGGGTAGGTTATAGAT 528
Query 475 GGATTACAAGATTTATGGCACTTGGATGTTATGCATTTCTTCTAATGCCAGGCTTTATTC 534
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 529 GGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTC 588
Query 535 AAGTCGGATATTACTATTTCTTCTCTCCTTACGTTCGCAGAAGTATAGTTTACGGTGATC 594
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAGTCGGATACTACTATTTCTTCTCTCCTTACGTTCGCAGAAGTATAGTTTACGGTGATC 648
Query 595 AACCAAGGAACAGGCTTGACTTGTATCTACCTAAAAACTCTACCGGACCAAAACCAGTTG 654
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 649 AACCAAGAAACAGGCTTGACTTGTATCTACCTAAGAACTCTACTGGACCAAAACCAGTTG 708
Query 655 TGGCGTTTGTGACTGGTGGAGCCTGGATTATTGGTTATAAGGCGTGGGGTTCTCTCTTAG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGGCGTTTGTGACTGGTGGAGCCTGGATTATTGGTTATAAGGCGTGGGGTTCTCTCTTAG 768
Query 715 GACAGCAGTTATCAGAAAGAGATATTATTGTGGCATGCATTGATTACAGGAATTTTCCGC 774
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GACAGCAATTATCAGAAAGAGATATTATTGTGGCATGCATTGATTACAGGAATTTTCCGC 828
Query 775 AGGGATCTATTAGTGACATGGTCAAGGATGCTTCTTCTGGCATCTCATTTGTTTGCAATC 834
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 AAGGATCTATTAGTGACATGGTCAAGGATGCTTCTTCTGGCATCTCATTTGTTTGCAATC 888
Query 835 ATATTGCTGAGTATGGAGGTGATCCAGACAGAATTTATCTGATGGGTCAGTCTGCCGGTG 894
|||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 889 ATATTGCTGAGTATGGAGGTGATCCAGATAGGATCTATCTGATGGGTCAGTCTGCTGGTG 948
Query 895 CACATATCGCAGCTTGCACCATTGTAGAGCAGGTCATTAAAGAGTCAGGGGAGGGGGACA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CACATATCGCAGCTTGCACCATTGTAGAGCAGGTCATTAAAGAGTCAGGGGAGGGGGACA 1008
Query 955 GTGTCTCTTGGAGTAGTTCACAAATAAATGCTTATTTTGGTCTATCTGGAGGATACAACC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GTGTCTCTTGGAGTAGTTCACAAATAAATGCTTATTTTGGTCTATCTGGAGGATACAACC 1068
Query 1015 TTTTGAGCCTTGTGGACCACTTCCATAGCAGGGGGCTGTACCGTTCCATCTTTCTGAGCA 1074
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TTTTGAACCTTGTGGACCACTTCCATAGCAGGGGGCTGTACCGTTCCATCTTTCTGAGCA 1128
Query 1075 TCATGGAAGGAGAGGAATCATTAAGGCAGTTTTCTCCTGAATTAGTAGTGCAAAACCCGA 1134
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1129 TCATGGAAGGAGAGGAATCATTAAGGCAGTTCTCTCCTGAATTAGTAGTGCAAAACCCGA 1188
Query 1135 ATCTCAAACACATCATTTCTCGTCTCCCACCATTTATTTTATTCCATGGTACTGATGACT 1194
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1189 ATCTCAAACACATCATTGCTCGTCTCCCACCTTTTATTTTATTCCATGGTACTGATGACT 1248
Query 1195 ACTCCATCCCTTCAGATGCAAGTAAATCTTTTGCGGAAACCCTCCAGAGGCTTGGGGCCA 1254
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ACTCCATCCCGTCAGATGCAAGTAAATCTTTTGCGGAAACCCTCCAGAGGCTTGGGGCCA 1308
Query 1255 AAGCAAAAGTGATCCTTTACGAGGGGAAAACACACACGGATTTGTTTCTTCAGGATCCAA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AAGCAAAAGTGATCCTTTACGAGGGGAAAACACACACGGATTTGTTTCTTCAGGATCCAA 1368
Query 1315 TGAGAGGTGGAAAAGATGAGATGTTTGAAGATATAGTATCAGTGGTTCTGGGAGACAATC 1374
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1369 TGAGAGGTGGAATAGATGAGATGTTTGAAGATATAGTAACAGTGGTTCTGGGAGACGATC 1428
Query 1375 AAGAA-CTGATTGGTAAAAGTGTAGACAGAAGGCGTCTTGTACCTGAATTCATGTTGAAG 1433
||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1429 AAGAAGC-GATTGGTAAAAGCGTAGATAGAAGGCGTCTTGTACCTGAATTCATGTTGAAG 1487
Query 1434 TTGGCTCACTGGGTCAGTCCGTTCTAACTCCTACACTCTTATCTCCCAGAAGATCAGAGG 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1488 TTGGCTCACTGGGTCAGTCCGTTCTAACTCCTACACTCTTATCTCCCAGAAGATCAAAGG 1547
Query 1494 AA-TCACATTCTTTCTTCCAGTGATACAGACGTGTCAGTGTGCATATTACTTAACAAGGA 1552
|| | |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1548 AAGT-ACATTCCTTCTTCCAGTGATACAGACGGGTCAATGTGCATATTACTTAACAAGGA 1606
Query 1553 AA-CAGATCCCACTATACTTTGACGATACAGATGATTTTGAACTTTGATGATGATGATAT 1611
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 AAACAGATCCCACTATACTTTGACGATACAGATGATTTTGAACTTTGATGATGATGATAT 1666
Query 1612 TGTATCCCGGTTTGCAATATACTCTGATTATTTCGTCATTCCCTGTTTGTGTT 1664
||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1667 TGTATCCCGGTTTGCAA-ATACACTGATTATTTCGTCATTGCCTGTTTGTGTT 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82228492710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5