BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472828
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25450.1 | Symbols: KCS5, CER60 | 3-ketoacyl-CoA synthase 5 ... 2540 0.0
> AT1G25450.1 | Symbols: KCS5, CER60 | 3-ketoacyl-CoA synthase
5 | chr1:8938479-8940387 REVERSE LENGTH=1784
Length=1784
Score = 2540 bits (1375), Expect = 0.0
Identities = 1516/1585 (96%), Gaps = 5/1585 (0%)
Strand=Plus/Plus
Query 1 CTCTCATCTGCCAACTTTCCTCTGTTTCTCCTTTATATCCCAAACCTATTC-TCCATCCA 59
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 13 CTCCCATCTGCCAACTTTCCTCTGTTTCTCCTTTATATCCCAAACCTATTCTTCC-TCCA 71
Query 60 AACCTCATCATAGGCATAGCAAAACTCTTCCAAAATGTCTGATTTCTCGAGCTCCGTGAA 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 CACCTCATCATAGGCATAGCAAAACTCTTCCAAAATGTCTGATTTCTCGAGCTCCGTGAA 131
Query 120 GCTTAAATATGTGAAACTCGGTTACCAATACCTTATCAACAACTTCCTTACTGTCCTTCT 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 132 GCTTAAATATGTTAAACTCGGTTACCAATACCTTATCAACAACTTCCTTACTCTTCTTTT 191
Query 180 GATTCCAGTCATAGCGACCATCGTCATTGAGCTTCTCCGAATGGGTCCCGAAGAGATTCT 239
||||||||||||||| ||| ||| ||| |||||||||||||||||||| |||||||||||
Sbjct 192 GATTCCAGTCATAGCAACCGTCGCCATCGAGCTTCTCCGAATGGGTCCGGAAGAGATTCT 251
Query 240 CAGTGTCTTGAACTCACTCCACTTCGAGCTCCTTCATATCCTTTGTTCCTCTTTCCTTAT 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 252 CAGTGTCTTGAACTCACTCCACTTCGAGCTTCTTCATATCCTTTGTTCCTCTTTCCTTAT 311
Query 300 CATTTTTGTTTCAACCGTTTACTTCATGTCCAAGCCACGCACCGTCTACCTTGTAGACTA 359
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 312 TATCTTTGTTTCAACCGTTTACTTCATGTCCAAGCCACGTACCGTCTACCTTGTGGACTA 371
Query 360 CTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCGTTCTCTTCCTTCATGGAACACTC 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 372 CTCTTGCTACAAACCTCCTGTCACGTGCCGTGTCCCGTTCTCTTCGTTCATGGAACACTC 431
Query 420 TCGTCTCATCCTCAAAGACAATCCCAAGAGCGTCGAATTCCAAATGAGAATCCTCGAGCG 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 432 TCGTCTCATCCTCAAAGACAATCCCAAGAGTGTCGAATTCCAAATGAGAATCCTCGAGCG 491
Query 480 ATCTGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGCTATTCATTACATCCCTCCAACTCC 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 ATCAGGTCTAGGAGAAGAGACTTGTCTCCCTCCAGCTATTCATTACATCCCTCCAACTCC 551
Query 540 GACCATGGAATCCGCAAGAAACGAGGCCCAAATGGTTATCTTCACAGCCATGGAAGATCT 599
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 552 AACCATGGAATCCGCAAGAAACGAGGCCCAAATGGTTATCTTCACCGCCATGGAAGATCT 611
Query 600 CTTCAAGAATACAGGTCTTAAACCTAAAGACATTGACATCCTCATTGTTAATTGCTCTCT 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 612 CTTCAAGAATACAGGTCTTAAACCTAAAGACATCGACATCCTCATTGTTAATTGCTCTCT 671
Query 660 GTTTTCACCAACGCCTTCTCTCTCCGCTATGATTATCAACAAGTACAAGCTTAGGAGTAA 719
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GTTCTCACCAACGCCGTCTCTCTCCGCTATGATTATCAACAAGTACAAGCTTAGGAGTAA 731
Query 720 CATCAAAAGTTATAACCTTTCTGGGATGGGATGTAGCGCCAGTCTTATCTCCGTCGATGT 779
||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| || |||||
Sbjct 732 CATCAAAAGCTATAACCTTTCCGGGATGGGATGCAGCGCTAGTCTTATCTCAGTTGATGT 791
Query 780 AGTACGTGACTTGTTACAAGTCCATCCTAACTCCAACGCAGTCATAATTAGCACTGAGAT 839
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 792 AGCACGTGATTTGTTACAAGTCCATCCTAACTCCAACGCAATCATAATTAGCACTGAGAT 851
Query 840 CATTACTCCTAATTACTATAAAGGTATTGAGAGAGCCATGTTGCTCCCAAACTGTCTCTT 899
||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 852 CATTACTCCTAATTACTATAAGGGTAATGAGAGAGCCATGTTGCTCCCAAACTGCCTCTT 911
Query 900 CCGCATGGGAGGCGCCGCCATTCTCCTCTCGAACCGCAGATCCGACAGGTGGCGAGCTAA 959
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 912 CCGTATGGGAGGCGCCGCCATTCTCCTCTCTAACCGCAGATCCGACAGGTGGCGAGCTAA 971
Query 960 GTACAAGCTATGCCACCTTGTTAGGACCCACCGCGGTGCGGATGACAAGTCTTACAACTG 1019
||||||| |||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 972 GTACAAGTTATGCCACCTTGTTAGGACCCATCGCGGTGCGGATGACAAATCCTACAACTG 1031
Query 1020 TGTTATGGAGCAGGAAGACAAAAACGGTAATGTGGGGATCAACTTGTCTAAAGATCTCAT 1079
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1032 TGTTATGGAACAGGAAGACAAAAATGGTAACGTGGGAATCAACTTGTCTAAAGATCTCAT 1091
Query 1080 GACCATCGCCGGAGAAGCATTG-AAGTCTAACATCACTACCATAGGTCCTTTGGTTCTTC 1138
|||||| ||||||||||| ||| ||| |||| ||||||||||||||||||||||| ||||
Sbjct 1092 GACCATTGCCGGAGAAGCCTTGAAAG-CTAATATCACTACCATAGGTCCTTTGGTCCTTC 1150
Query 1139 CGGCATCGGAGCAGCTTCTCTTCCTCTCATCCCTTATCGGACGTAAAATCTTCAATCCAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CGGCATCGGAGCAGCTTCTCTTCCTCTCATCCCTTATCGGACGTAAAATCTTCAATCCAA 1210
Query 1199 AGTGGAAGCCGTACATACCAGATTTCAAGCAGGCCTTCGAGCATTTCTGCATCCACGCAG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 AGTGGAAGCCGTACATACCAGATTTCAAGCAGGCCTTCGAGCATTTCTGCATCCACGCAG 1270
Query 1259 GAGGAAGGGCGGTGATTGACGAGCTGCAAAAGAATTTGCAGCTGTCGGGAGAACACGTGG 1318
||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 1271 GAGGAAGAGCGGTGATTGATGAGCTGCAAAAGAATCTACAGCTGTCGGGAGAACACGTGG 1330
Query 1319 AAGCTTCAAGAATGACACTACATAGGTTTGGTAATACCTCGTCGTCATCATTGTGGTATG 1378
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1331 AAGCTTCAAGAATGACACTACATAGGTTTGGTAATACATCGTCGTCATCATTATGGTATG 1390
Query 1379 AGCTTAGCTACATAGAGGCTCAAGGGAGAATGAAGAGAAGTGATAGGGTTTGGCAGATCG 1438
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1391 AGCTTAGCTACATAGAGGCTCAAGGGAGAATGAAGAGAAACGATAGGGTTTGGCAGATCG 1450
Query 1439 CGTTCGGGAGTGGATTCAAGTGTAACTCCGCCGTTTGGAAATGTAACCGTACGATCAAGA 1498
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CTTTCGGAAGTGGATTCAAGTGTAACTCCGCCGTTTGGAAATGTAACCGTACGATCAAGA 1510
Query 1499 CACCAACGGATGGAGCATGGTCGGATTGTATCCAACGATATCCTGTCTTTATCCCTGAAG 1558
|||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1511 CACCAACGGATGGAGCGTGGTCGGATTGTATCGAACGATACCCTGTCTTTATCCCTGAAG 1570
Query 1559 TTGTCAAACTATGAAAATAACTTTT 1583
|||| |||||||||||||| |||||
Sbjct 1571 TTGTTAAACTATGAAAATA-CTTTT 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84286715055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5