BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472829
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25440.1 | Symbols: | B-box type zinc finger protein with C... 2303 0.0
> AT1G25440.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr1:8933716-8935460 REVERSE LENGTH=1653
Length=1653
Score = 2303 bits (1247), Expect = 0.0
Identities = 1487/1598 (93%), Gaps = 35/1598 (2%)
Strand=Plus/Plus
Query 6 ACACTAAATCTAACTTTTTGCAGAGAGCAAAAGATTCAATTATTGAGATTGATCTCAAAA 65
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 64 ACACTAAATCTAACTTTTTGCAGAGAGCAAAAGATTCAATAATTGAGATTGATCTCAAAA 123
Query 66 TCAAAGCTCTCGTGCTCTTGTCGTTGATGTTGGTTTTTTAGAGTTTGTATACAAAGATGA 125
|||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||
Sbjct 124 CCAAAGCTCTCGTGCTCTTGTCGTTGATGTTGGTTGTGTAGACTTTGTATACAATGATGA 183
Query 126 AAAGTTTGGCGAATGCTGTTGGAGCGAAGACGGCGAGGGCTTGCGACAGCTGCGTCAAGA 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 184 AAAGTTTGGCGAATGCTGTTGGAGCGAAGACGGCGAGGGCTTGCGACAGCTGCGTGAAGA 243
Query 186 GACGTGCGCGGTGGTACTGCGCGGCCGACGATGCTTTTCTTTGCCAATCTTGTGACAGTT 245
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 244 GACGTGCACGGTGGTACTGCGCGGCCGACGATGCTTTTCTTTGCCAGTCTTGCGACAGTT 303
Query 246 TGGTCCACTCAGCGAACCCTCTTGCTCGCCGGCACGAGAGAGTCCGTTTGAAGACGGCCA 305
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 304 TGGTCCATTCAGCAAACCCTCTTGCTCGCCGCCACGAGAGAGTCCGTTTGAAGACGGCTA 363
Query 306 GCCCGGCGGTGGTAAAGCATAGCAACCACTCATCAGCTTCTCCTCCACATGAGGCCGCCA 365
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 364 GCCCGGCGGTCGTAAAGCATAGCAACCACTCATCAGCTTCTCCTCCACATGAGGTCGCCA 423
Query 366 CGTGGCATCACGGGTTCACTCGTAAAGCTCGGACGCCACGTGGCTCTGGTAAGAAGAACA 425
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 424 CGTGGCATCACGGGTTTACTCGTAAAGCTCGAACGCCACGTGGCTCTGGTAAGAAAAACA 483
Query 426 ATTCGTCGATTTTTCATGACTTGGTGCCGGAGATTAGTGTTGAGGATCAGACTGACAGCT 485
|||||||||| |||||||||||||| || || |||||| ||||||||||||| |||| ||
Sbjct 484 ATTCGTCGATATTTCATGACTTGGTTCCTGATATTAGTATTGAGGATCAGACAGACAACT 543
Query 486 ATGAGCTTGAAGAGCAGCTGATCTGTCAAGTGCCGGTTCTAGACCCGCTGGTGGCTGAGC 545
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 544 ATGAGCTTGAAGAGCAGCTGATCTGTCAAGTGCCGGTTCTAGATCCGTTGGTGTCTGAGC 603
Query 546 AGTTCTTGAACGATGTCGTTGAGCCCAAGATCGAGTTTCCGATGATGAGAAGTGGTATGA 605
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 604 AGTTCTTGAACGATGTCGTTGAGCCCAAGATCGAGTTTCCTATGATCAGAAGTGGTTTGA 663
Query 606 TGATCGAGGAGGAGGAAGACAACGCTGAAAGTTGTCTTAATGGTTTTTTCCCAACCGACA 665
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 664 TGATCGAGGAGGAGGAAGACAACGCTGAAAGTTGTCTTAATGGATTTTTCCCGACCGACA 723
Query 666 TGGAGCTTGAGGAGTTTGCTGCTGACGTGGAGACTCTGCTCGGTCGCGGGTTAGACTCTG 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 724 TGGAGCTTGAGGAGTTTGCTGCTGACGTGGAGACTCTGCTCGGTCGCGGGTTAGACACGG 783
Query 726 AGTCCTATCCCATGGAGGAGCTAGGGTTATCTAATTCAGAGATGTTCaaaatcgaaaaag 785
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AGTCGTATGCCATGGAGGAGCTAGGGTTATCTAATTCAGAGATGTTCAAAATCGAAAAAG 843
Query 786 acgagattgaagaagaagtagaagaaagaaaagCCATGAACATGGAAATATTCGATGATG 845
| ||||||||||||||||||||||| | ||||||||||| |||||| ||||| |||||||
Sbjct 844 ATGAGATTGAAGAAGAAGTAGAAGAGATAAAAGCCATGAGCATGGATATATTTGATGATG 903
Query 846 ATCGAAAAGACGGGGATGGGACAGTACCGTTTGAGCTAAACTTTGATTACGAGTCGTCAC 905
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 904 ATCGAAAAGACGTGGATGGAACAGTACCGTTTGAGCTAAGCTTTGATTACGAGTCGTCAC 963
Query 906 ACAAGACATCCGAAGAAGAGGTAATGAAGAATGTTGAAAGTAGTGGTGAATGTGTTGTTA 965
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 964 ACAAGACGTCCGAAGAAGAGGTAATGAAGAACGTTGAAAGTAGTGGTGAATGTGTTGTTA 1023
Query 966 AGGTAAAAGAGGAAGAACAGAAGAATGTTCTGTTGCTGAGATTAAACTACGACTCGGTTA 1025
|||| |||||||||||||| |||||||||||| |||| ||||||||||| |||||||| |
Sbjct 1024 AGGTGAAAGAGGAAGAACATAAGAATGTTCTGATGCTAAGATTAAACTATGACTCGGTGA 1083
Query 1026 TATCCACTTGGGGCGGCCAAGGTCCACCGTGGAGTTCAGGAGAGCCACCGGAGCGAGACA 1085
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1084 TATCCACTTGGGGAGGTCAAGGTCCACCGTGGAGTTCAGGAGAGCCACCGGAACGAGACA 1143
Query 1086 TGGACATCAGCGGTTGGCCAGCCGTTTCCATGGGGGAGAATGGAGGAGAAAATACTCATA 1145
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 1144 TGGACATCAGCGGTTGGCCAGCCTTTTCCATGGTGGAGAATGGAGGAGAAAGTACTCATC 1203
Query 1146 AGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGATTTGGAGATGGAGGTAGAGAAG 1205
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1204 AGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGGTTTGGAGATGGAGGTAGAGAAG 1263
Query 1206 CTCGGGTTTCGAGATACAGAGAGAAGAGAAGGACGAGGTTGTTTTCTAAGAAGATAAGGT 1265
|| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 1264 CTAGAGTTTCGAGATACAGAGAGAAGAGGAGGACAAGGTTGTTTTCTAAGAAGATACGGT 1323
Query 1266 ACGAGGTACGTAAACTGAATGCGGAGAAAAGACCACGAATGAAAGGAAGATTCGTTAAGA 1325
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1324 ACGAGGTACGTAAATTGAATGCAGAGAAAAGACCACGAATGAAAGGAAGATTCGTGAAGA 1383
Query 1326 GAGCCTCGCTCGCTGCTTCCGGTGCTGCAAATTCACCATTAGGTGTTAATTACTGAATAG 1385
||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 1384 GAGCCTCGCTCGCTGCT---G---CTGC---TTCACCATTAGGTGTTAATTACTGAATAG 1434
Query 1386 TGAATATCTATTCATGTTATATCTCACTTTACAAATTTTGGTGAA-CtttttttCTTCTG 1444
| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 1435 TTAATATCTATTCATGTTATATCTCACTTTACAAATTTCGGTGAATCTTTTTT-CTTCTG 1493
Query 1445 AAACAACAGAAGTTATTTTGGCACTTAATTGTG-T---A----T-GTA----CATAGATG 1491
||||||||||||||||||||||||||||||||| | | | ||| |||||| |
Sbjct 1494 AAACAACAGAAGTTATTTTGGCACTTAATTGTGCTTTGAGGACTTGTATGTACATAGAAG 1553
Query 1492 TAACCAATAAT---GTGACTTTT-CTTGTATTGATAGTACTGATGTATATATTTGGTAAT 1547
||||||||||| ||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 1554 TAACCAATAATAATGTGACTTTTACTTGTATTGATAGCACTGATGTATATATCTGGTAAT 1613
Query 1548 AAGAATGTGCAAA--G----G-CATTTTGATTGTTAAA 1578
||||||||||||| | | ||||||||||||||||
Sbjct 1614 AAGAATGTGCAAACTGCAAAGGCATTTTGATTGTTAAA 1651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5