BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472892
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3694 0.0
> AT1G24560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G49055.1);
Has 71940 Blast hits to 38124 proteins in 2481 species: Archae
- 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786;
Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source:
NCBI BLink). | chr1:8702385-8705848 FORWARD LENGTH=2504
Length=2504
Score = 3694 bits (2000), Expect = 0.0
Identities = 2237/2352 (95%), Gaps = 14/2352 (1%)
Strand=Plus/Plus
Query 1 CCTCCTTGGCGAAGCAATTGCGTCAATCCCTTGCACGCTACTGTTATAAACTACAAAAAT 60
||||||||||||||||||||||||||| |||||||||| ||| ||| ||||| |||||
Sbjct 154 CCTCCTTGGCGAAGCAATTGCGTCAATTCCTTGCACGCCACTATTA-CGACTACGAAAAT 212
Query 61 CTAGATCGGAGAGAAGGCTAAATCGTCTTCACTGATCG-ACGGTGAGATGGCTAACGGAC 119
|||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 213 CTAGATCGGAGAGAAGACTAAATTATCTTCACTGATCGCACGGTGAGATGGCTAACGGAG 272
Query 120 CCGATGAGGACGCCGATGCTGTCCTCAGCGATGTCGAGTCCGATGAACCAGCGCCTGTTG 179
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 CCGAT---GA-G--GATGCTGTCCTCAGCGATGTCGAGTCCGATGAACCAGCGCCTGTTG 326
Query 180 TTTTAAAGGATTCTCCCCGGGAAGAAGCATCTGAGGAGAGGATAACGGAGCTTATCGCGG 239
||||||||||||| || |||||||||||||| || ||||||||||||||||| || ||||
Sbjct 327 TTTTAAAGGATTCGCCGCGGGAAGAAGCATCGGATGAGAGGATAACGGAGCTAATAGCGG 386
Query 240 AGCTCGATCGAGAGAAGAAAGCTCGAGAAGCGGCTGAGAGTTCGAAATCGGAGCTTCAGG 299
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGCTTGATCGAGAGAAGAAAGCTCGAGAAGCGGCTGAGAGTTCGAAATCGGAGCTTCAGG 446
Query 300 TCTCGTTCAATCGGTTAAAATCTCTTGCT-CACGAGGCAATAAAGAAGCGTGACGAGTCT 358
| |||||||||||||||||| |||||||| | |||||||| |||||||| |||||||||
Sbjct 447 TTTCGTTCAATCGGTTAAAAGCTCTTGCTGTA-GAGGCAATCAAGAAGCGCGACGAGTCT 505
Query 359 AAGCGAGAACGAGATGAAGCATTGAAGGAGAAGGAGAATTTAACAAAGGAGCTTGAGAAT 418
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 506 AAGCGAGAACGTGATGAAGCATTGAAGGAGAAGGAGAATCTAACAAATGAGCTTGAGAAT 565
Query 419 GTTAATAAAGGTAAGGATGAGATGTCGAAGAAACTTGATGATGCTGTGAGATCTAGAGAT 478
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 566 GTTAATAAAGGTAAGGATGAGATGTCGAAGAAACTTGATGAGGCTTTGAGATCTAGAGAT 625
Query 479 GGTTTAAAAGCAGAGATTGAGAATTCCTCGCATATGTTGGTTTCTGGGATTGAGAAGATA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GGTTTAAAAGCAGAGATTGAGAATTCCTCGCATATGTTGGTTTCTGGGATTGAGAAGATA 685
Query 539 TCTGCTAAAGTTAGCAGCTTTAAGAATTTTTCAAATGGAGGTCTTCCTAAGTCTCAGAAA 598
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 686 TCTGGTAAAGTTAGCAGCTTTAAGAATTTTTCAAATGGTGGTCTTCCCAAGTCTCAGAAA 745
Query 599 TACACAGGTCTGGCTTCTGTAGCTTATGGAGTTATTAAGCGTACTAATGAAATTGTGGAA 658
|| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 746 TATACAGGTTTGACTTCTGTAGCTTATGGAGTTATTAAGCGTACTAATGAAATCGTGGAA 805
Query 659 GAGCTTGTTAGGCAGATTGATACGACTGCCAAGTCCAGAAATGAAGCTAGAGAGCAGATG 718
||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 806 GAGCTTGTTAGGCAGATTGATACGACTGCAAAGTCGAGGAATGAAGCTAGGGAGCAGATG 865
Query 719 GACCAACGGAATTACGAGATAGCTATTGAAGTTTCTCAGCTGGAATCTGCGATCAGTAAT 778
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 866 GACCAACGGAATTATGAGATAGCTATTGAGGTTTCTCAGTTGGAATCTGCGATCAGTAAT 925
Query 779 TTACGATTAGAGGTTGCAGAGAAGGCTTCGATTGTTGATGATTTAGAGAGGAGTGTGAGT 838
||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 926 TTAAGATTAGAGGTTGCGGAAAAGGCTTCGATTGTTGATGATTTAGAGAGGGGTGTGAGT 985
Query 839 GAGAAAGACAAGAGGATTGCTGAACTTGAGAAAGGTAATTTAGAGAAGGTAAGTGTGCTG 898
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 986 GAGAAAGAGAAGAGGATTGCTGAACTTGAGAAAGGTAATTTAGAGAAGGTCAGTTTGCTG 1045
Query 899 GAAGGTGAGGTTGTGGAGCTGAAACAGTTAGTTGATGAGTATGATGGGAAGTTGAAGACT 958
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1046 GAAGGTGAAGTTGTGGAGCTGAAACAGTTGGTTGATGAGTATGATGGGAAGTTGAAGACT 1105
Query 959 ATGGAACTGAAGATGGTTGCTCAGCGTCCTTTGTTGATGGATCAGCTGAATCTTGTGTCA 1018
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1106 ATGGAACTGAAGATGGTAGCTCAACGTCCTTTGTTGATGGATCAGCTTAATCTTGTGTCA 1165
Query 1019 AGGATTCATGACCAACTTTACGAGGTTTTAAGGATAGTTGACGGAAATAGTTCAGAACAG 1078
||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1166 AGGATCCATGACCAGCTTTACGAGGTTGTAAGGATAGTTGACGGGAATAGTTCAGAACAG 1225
Query 1079 TCGGATTTGTCTGAGTCTTTCTTTATGCCTCAAGAGACAGAGATGGAGGAGAACATTCGA 1138
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TCAGATTTGTCTGAGTCTTTCTTTATGCCTCAAGAGACAGAGATGGAGGAGAACATTCGA 1285
Query 1139 GCTTCATTAGCAGGTATGGAATCCATCTTTGAACTGACCAAGGTGGTTTCTGGGAAAACA 1198
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 1286 GCTTCTTTAGCAGGTATGGAATCCATCTTCGAACTGACCAAAGTGGTTTCTGGGAAAGCA 1345
Query 1199 CAGAGTTTGGTGGAAGAGAAGAGCCATGAACTGAAGAATTTGAATGAAACTTTGGGTCTA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1346 CAGAGTTTGGTGGAAGAGAAGAGCCATGAACTGAAGAATTTGAATGAAACTGTGGGTCTA 1405
Query 1259 TTAGTTAAGGAGAAGGAACATATTGGTACTTTACTGAGGAGCGCTTTGTCCAAAAGGATG 1318
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1406 TTAGTTAAGGAAAAAGAACATATTGGTACTTTACTGAGGAGCGCTTTGTCCAAAAGGGTG 1465
Query 1319 ATAGGAGAGCAGCCAGCCCAAAAAAGAGAATTGTTTCAAGCTGCAGAGAATGGTTTGAGG 1378
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 ATAGGAGAGCAGCCATCTCAAAAAAGAGAATTGTTTCAAGCTGCAGAGAATGGTTTGAGG 1525
Query 1379 GATGCTGGTACTGATTCCAAATTCGCTAAACTCTTAAAGGATGGGAAGGTTCAGGACTCT 1438
|||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1526 GATGGTGGTACTGATTCTAAATTTGCTAAACTCTTAAAGGATGGGAAGGTTCAGGACTCT 1585
Query 1439 CGTAGTGATAATACTGATGACCATAGTACAGAAGACAACGAAATATACTCCCTGGCCAGC 1498
||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1586 CGTAGTGATAATACTCATGACCATAGTAAAGAAGACAATGAAATATACTCCCTGGCCAGC 1645
Query 1499 ACATTGGAGAATATTGTCAAGGCATCTCAGCTCGAGATCGTCGAACTGCAGCACTTGTTG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 ACATTGGAGAATATTGTCAAGGCATCTCAGCTCGAGATCGTCGAACTGCAGCACTTGTTG 1705
Query 1559 GAAGAATCAAGGGAAGAGACTAGTTCTCTTAGAAAACAATTGGACACTCAGACAAAGGAG 1618
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 GAAGCATCAAGGGAAGAGACTAGTTCTCTTAGAAAACAATTGGACACTCAGACAAAGGAG 1765
Query 1619 CTTAACCAGAGAATGCGCCAAATAGAAGAACTTAAAGAAAAAGAGAGGATAGCAAACGAA 1678
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1766 CTTAACCAGAGAATGCGCCAAATAGAAGAACTTAAAGAAAAGGAGAGGATAGCAAACGAA 1825
Query 1679 AACGTTGAAGGACTTATGACTGACATTGCTGCTGCGGAAGAAGAAATAACAAGATGGAAA 1738
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1826 AACGTTGAAGGGCTTATGACTGACATTGCTGCTGCTGAAGAAGAAATAACAAGATGGAAA 1885
Query 1739 GTAGCAGCCGAGCAGGAGGCTGCTGCTGGTGGAGCTGTTGAACAAGACTTCACATCACAG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1886 GTAGCAGCCGAGCAGGAGGCTGCTGCTGGTGGAGCTGTTGAACAAGACTTCACGTCACAG 1945
Query 1799 CTGTATGTGCTAAAAGAAGAACTTGAAGAGGCAAAGCAAGCAATAATAGAATCAGAAAAG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 CTGTATGTGCTAAAAGAAGAACTTGAAGAGGCAAAGCAAGCAATAATAGAATCAGAAAAG 2005
Query 1859 AAACTAAAGTTTAAGGAAGAGACGGCTGCTGCAGCCATGGGTGCAAGGGATGCAGCAGAG 1918
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 2006 AAACTAAAGTTTAAGGAAGAGACGGCAGCAGCAGCAATGGGTGCAAGGGATGCAGCAGAG 2065
Query 1919 AGATCTCTGAGACTCGCAGACAATAGGGCTACTAAGTTGAGGGAAAGAATCCAAGAGCTA 1978
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2066 AGATCTCTGAGACTCGCAGACAATAGGGCGACTAAGTTGAGGGAAAGAATCCAAGAACTA 2125
Query 1979 AACCGTAAAGTTGAAGAATTAGAAACCCATCGGGATATGAATACTTCAAACAGAGCTAGA 2038
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2126 AACCGTAAAGTTGAAGAATTAGAAACCCATCGAGATATGAATACTTCAAACAGAGCTAGA 2185
Query 2039 TATGCGTGTTGGCCATGGCAACTTCTCGGGATTGATTTTGTGGGAGGTCGAAGAATTGAG 2098
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2186 TATGCGTGTTGGCCATGGCAACTTCTCGGGATTGATTTTGTGGGAAGTCGAAGAATTGAG 2245
Query 2099 TCAGGACAAGAAAGTGCGAACGAGATGGAACTCGCTGAACCTCTACTATGAGAAA--CCG 2156
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2246 TCGGGACAAGAAAGTGCGAACGAGATGGAACTCGCTGAACCTCTACTATGAGAAAAACCG 2305
Query 2157 GTACTG-ATACCAATACCATACTCTCTGTATTTGTATTTGATTTTTGTGTATATACCACC 2215
|||||| ||||||| |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 2306 GTACTGTATACCAAAACCATACTCTCTGTATTTGTTTTTGATTTTTATGTATATACCACC 2365
Query 2216 TGAAAAAAGTCTTTCAAAGCTTTAACATGTTTTCATGTTGTAATGTTTGAGTAAAAGAAG 2275
||||||| || ||| |||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 2366 TGAAAAATGTTTTTAAAAGCTTTAACACGTTCTCATGTTGTAATGTTTGAGTTAAAGAAG 2425
Query 2276 TTTAATTTGGAGGCTTGGCGAAAAGTAGGGTGTTTCCCACACCCAA-CAGTGAACAATAA 2334
||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||
Sbjct 2426 TTTAATTTGGAGGCTTGGCGAAAAGTAAGATGTTTCCCACACCCAAACAGTGATCAATAA 2485
Query 2335 ATTATGAAACTT 2346
| ||| ||||||
Sbjct 2486 AATATAAAACTT 2497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116465264400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5