BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472926
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27300.1 | Symbols: | unknown protein; Has 54 Blast hits to... 1018 0.0
> AT1G27300.1 | Symbols: | unknown protein; Has 54 Blast hits
to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa
- 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr1:9483157-9484368 FORWARD
LENGTH=944
Length=944
Score = 1018 bits (551), Expect = 0.0
Identities = 718/793 (91%), Gaps = 33/793 (4%)
Strand=Plus/Plus
Query 1 CTCAAAAATGGTGGAGGTGCCGTGCCGTCAATTGATGTCACGTGTCCTGACAATGCATTC 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 12 CTCAAAAATGGTAGAGGTGCCGTGCCGTCAATAGATGTCACGTGTCCTGAC-TTGCCTTC 70
Query 61 TCAATACAAAC--AAATACTCTCTACCTaaaaaaa-aCAATAAACAAACAGAACACATCT 117
||||||||||| |||||||||||||||||||||| ||||||||| |||| ||| |||||
Sbjct 71 TCAATACAAACAAAAATACTCTCTACCTAAAAAAACACAATAAAC-AACA-AACGCATCT 128
Query 118 TTGGAGCGTCGGTGAGGTTGGAGGAGAAGGGTTTGTGAAATGGAGTCGAGTGAGGATGTG 177
|||||||| ||||||| || ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 129 TTGGAGCGGCGGTGAGATTAGAGAAGAAGGGTTTGTGAAATGGAGTCCAGTGAGGATGTG 188
Query 178 GAGAATCTGAGTAGAGCTATCGAGAAACTTCTTAC-TGAGAAGAGGAAGAGAGAAGCTTC 236
|||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||
Sbjct 189 GAGAATCTGAGTAGAGCTATTGAGAAGCTTCTT-CATGAGAAGAGGAAGAGAGAAGCTTC 247
Query 237 TGGTGACGCTTTCATTGAAGACGAC-GATGATCAGCTTTTGCTCTCTAGGCTTATCTCTC 295
||||||||| ||||||||||||| | |||||||||||||| |||||||| ||||||||||
Sbjct 248 TGGTGACGCCTTCATTGAAGACG-CTGATGATCAGCTTTTCCTCTCTAGCCTTATCTCTC 306
Query 296 AGTTGGAATCACCAAAGTCCAA--GG-AA-AA-A-G-C---A--GGTG-TG-ATAA-CCA 340
|||||||||||||||| |||| || || || | | | | || | | | || |
Sbjct 307 AGTTGGAATCACCAAACCCCAAGGGGAAAGAAGATGTCATAACCGGAGAAGAAGAAGAAA 366
Query 341 AAGAAGAAGAA---G-A-A-TCTTCACCATCCAAAGGAAAACGCGAGGGCCAGAGACAAT 394
||||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 367 AAGAAGAAGAATCTGCAGATTCTTCACCATCCAAAGGAAAAAGCGAGGGCCAGAGACAAT 426
Query 395 TGGAAGAGAGTATAGAAGAATTAGCTAAAGACATCAAGAAGGTGAAGAAACAGAACACAA 454
||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 427 TGGAAGAAAGTATAGAAGAAATAGCTAAAGACATCAAGAAGGTGAAGAAGCAGAACAAAA 486
Query 455 TAACCCATGTACTTCTCTCGGCTGTGATCATCCTGACATTGACTTGGCAGCTCTCTGAGT 514
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 487 TAACCCATGTACTTCTCTCGGCTACGATCATCCTGACATTGGTTTGGCAGCTCTCTGAGT 546
Query 515 ACTCGATGATTTTCATGTTGAAAGATAGAATAAGCCACCCAGTCAGATCCATCGGAGGTA 574
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ACTCCATGATTTTCATGTTGAAAGATAGAATAAGCCACCCAGTCAGATCCATCGGAGGTA 606
Query 575 TGCTTAATGGGATGTTCAAAGGTAAGTTACGTCCAATCAAGAACCAACTTGCGGGGACTT 634
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TGCTTAATGGAATGTTCAAAGGTAAGTTACGTCCAATCAAGAACCAACTTGCGGGGACTT 666
Query 635 CCAACTCCAATGACCAAAACAACCATGGGAATGGAACACAAATTGGACCTCAACTTCAAG 694
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 667 CCAACTCCAATGACCAAAACAACCATGGGAATGGATCACACACTGGACCTCAACTTCAAG 726
Query 695 TGCCCGAGTTGTTGCGAGAATTCGGTTTCAACGACGATGAATGATGATACTTTCCTTTGT 754
|||||||| |||||||||||||||||||| |||| || ||||||| | ||| |||||||
Sbjct 727 TGCCCGAGCTGTTGCGAGAATTCGGTTTCGACGATGAAGAATGAT-AG-CTTCCCTTTGT 784
Query 755 GACTCAATAATAC 767
|||||||||||||
Sbjct 785 GACTCAATAATAC 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37273737074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5