BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472931
Length=385
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27350.1 | Symbols: | Ribosome associated membrane protein ... 560 3e-159
AT1G27330.1 | Symbols: | Ribosome associated membrane protein ... 399 7e-111
> AT1G27350.1 | Symbols: | Ribosome associated membrane protein
RAMP4 | chr1:9498151-9499425 REVERSE LENGTH=497
Length=497
Score = 560 bits (303), Expect = 3e-159
Identities = 361/388 (93%), Gaps = 7/388 (2%)
Strand=Plus/Plus
Query 1 CTCGCGATCGTCATTTCAATTCCTTATTCGC-TTCCTAGTGTTTCTTCTCCGGCGTAATC 59
||||||||||||||||||||| || ||| || ||||| ||||||||||||||||||||||
Sbjct 63 CTCGCGATCGTCATTTCAATTTCTAATTAGCTTTCCTGGTGTTTCTTCTCCGGCGTAATC 122
Query 60 ATGACAACCTCAAAGCGACTCGCAGACAGGAAGATTGAGAAATTCGACAAGAACATTTTA 119
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 123 ATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGAAATTCGACAAAAACATTTTA 182
Query 120 AAAAGAGGTTTTGTTCCTGAGACCACCACCAAGAAGGGCAAGGATTA-CCCTGTTGGTCC 178
|| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 183 AAGAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGCAAGGATTATCCC-GTTGGTCC 241
Query 179 CATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCATCTCTCTTCCAGATCATCAG 238
|||||| || |||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 242 CATCCTTCTTGGCTTCTTTGTCTTTGTTGTCATTGGATCATCTCTCTTTCAGATCATTAG 301
Query 239 GACCGCAACTAGCGGAGGCATGGCATAAACCAAATA-ACAGTCAAGCTAGAAGAAACAGT 297
||| |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 302 GACTGCAACTAGCGGAGGCATGGCATAAACCAAA-ACACAGTCAAGCTAGAAGAAGCAGT 360
Query 298 TTTCAAAATGGAGAATCTTCTTCTGTCTCTCCTCTCTTTTACTCTCCTTATACTGTAGAA 357
|||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct 361 TTTCAAAATGTAGAATCTTCTTCTG--TCTCCTTTCTTTTTCTCTCCTTATACTGTAGAA 418
Query 358 TGTGTCAACTTTCTGTTTACTATATCAT 385
||||||||||||||||||||||||||||
Sbjct 419 TGTGTCAACTTTCTGTTTACTATATCAT 446
> AT1G27330.1 | Symbols: | Ribosome associated membrane protein
RAMP4 | chr1:9492964-9494069 FORWARD LENGTH=478
Length=478
Score = 399 bits (216), Expect = 7e-111
Identities = 308/350 (88%), Gaps = 15/350 (4%)
Strand=Plus/Plus
Query 42 TTCTTCTCCGGCGTAATCATGACAACCTCAAAGCGACTCGCAGACAGGAAGATTGAGAAA 101
||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 83 TTCTTCTCCGGTGTAATCATGACAACCTCAAAAAGACTAGCAGACAGGAAGATTGAGAAA 142
Query 102 TTCGACAAGAACATTTTAAAAAGAGGTTTTGTTCCTGAGACCACCACCAAGAAGGGCAAG 161
|||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 143 TTCGACAAGAACATATTGAAAAGAGGATTTGTTCCTGAGACCACCACCAAGAAGGGTAAG 202
Query 162 GATTACCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTCGTTGTCATTGGATCATCT 221
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 203 GATTACCCTGTTGGTCCCATCCTCCTCGGCTTCTTTGTCTTTGTTGTCATTGGATCATCT 262
Query 222 CTCTTCCAGATCATCAGGACCGCAACTAGCGGAGGCATGGCATAAACCAAATAACAGTCA 281
||||||||||||||||||||||||||||| ||||| ||||| |||||| ||| ||| |||
Sbjct 263 CTCTTCCAGATCATCAGGACCGCAACTAGTGGAGGAATGGCTTAAACCCAATCACATTCA 322
Query 282 AGCTAGAAGAAA-CAGTTTTCAAAATGGA-GAATCTTC--TT-CTGTCTCT-C---CT-- 330
|||| ||||| || || ||||| || | ||||| || || || ||||| | ||
Sbjct 323 AGCTGGAAGATTGCAATTCTCAAATTG-ATGAATCATCACTTTCT-TCTCTTCTGACTTG 380
Query 331 -CTCTTTTACTCTCCTTATACTGTAGAATGTGTCAACTTTCTGTTTACTA 379
||||||| || ||||||||||||||||||| | |||||||||| ||||
Sbjct 381 TCTCTTTTTTTC-CCTTATACTGTAGAATGTGACTACTTTCTGTTGACTA 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18146657389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5