BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472939
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27370.1 | Symbols: SPL10 | squamosa promoter binding protei... 2047 0.0
AT1G27360.1 | Symbols: SPL11 | squamosa promoter-like 11 | chr1... 1478 0.0
> AT1G27370.1 | Symbols: SPL10 | squamosa promoter binding protein-like
10 | chr1:9505201-9508280 REVERSE LENGTH=2727
Length=2727
Score = 2047 bits (1108), Expect = 0.0
Identities = 1247/1312 (95%), Gaps = 18/1312 (1%)
Strand=Plus/Plus
Query 228 ATAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTCCGTTCCCG 287
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 ATAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTTCGTTCCCG 1313
Query 288 TGGGACTGGGAGAATTTGATCATGTCCAATCCGTCAAAGACTGAAAATGAAAAAAGGCAG 347
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1314 TGGGACTGGGAGAATTTGATCATGTCCAATCAGTCGAAGACTGAAAATGAAAAAAAACAG 1373
Query 348 CAATCTACTGAGTGGGAATTTGAAAAAGGTGATGGAATTGAATCTATAGTTCCAGATTTC 407
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1374 CAATCTACTGAGTGGGAATTTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCAGATTTC 1433
Query 408 TTAGGCCTTGAGAAAGTCAGTAGTGTCTCTGCCACTAGTTTCTGGCACACTGCTGTATCA 467
|||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct 1434 TTAGGCTTTGAGAAAGTCAGTAGTGGCTCTGCTACTAGTTTCTGGCACACTGCCGTATCA 1493
Query 468 AAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGTCAAACGATGCAATCTT 527
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1494 AAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGACAAACGATGCAATCTT 1553
Query 528 GCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTGTCCAGGTGAAGGCA 587
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1554 GCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTCTCCAGGTGAAACCA 1613
Query 588 TCCACAGCTCTCGAGGTATCTGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTAGGA 647
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 1614 TCCACAGCTCTCGAGGTACCTATTGCCTCAGCTGAATCAGATCTTTGTTTGAAACTAGGA 1673
Query 648 AAACGGACATACTCTGAAGAATTTTGGGGTAGCAACAATAATGACATTTCAGCAGTTTCT 707
|| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1674 AAGCGGACATACTCTGAAGAATTTTGGGGTAGGAACAATAATGACCTTTCAGCGGTTTCT 1733
Query 708 ATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAGAGC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAGAGC 1793
Query 768 ATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTGCTAAGGAT 827
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1794 ATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTTCTAAGGAT 1853
Query 828 TATCATCGCAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTATTGTGAGT 887
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1854 TATCATCGCAAGCATAGAGTCTGCGAAACGCATTCAAAGTGCCCAAAAGTTGTTGTGAGT 1913
Query 888 GGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTTCATGCTGTATCAGAATTTGAT 947
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1914 GGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCAGAATTTGAT 1973
Query 948 GAGAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGAAAGCCA 1007
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1974 GAAAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGCAAGCCA 2033
Query 1008 CAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTACGATCGAAGACAGCACACAAGTATG 1067
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2034 CAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTTCGATCGAAGACAGCATACAAGTATG 2093
Query 1068 TTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATGCATGGGGTACCACT 1127
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2094 TTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATACATGGGGTACCACT 2153
Query 1128 TATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAAT 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGAGGTAAT 2213
Query 1188 GGCTCTGAGGAGCAGCAGTTTGCTAGTAGCAGCCTCTCTTTCTCTGCGTTTCAAACCTCT 1247
||||||||||| || | |||| || |||||| |||||||||||||||||||||||| |||
Sbjct 2214 GGCTCTGAGGACCAACTGTTTACTGGTAGCACCCTCTCTTTCTCTGCGTTTCAAACATCT 2273
Query 1248 GGCGGGTTCCCAGCAGGGAAATCCAACGTTCAACTTCCTGACAAAGGTGTGGGAGAATGC 1307
|| |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2274 GGTGGGTTCTCAGCAGGGAAATCCAACATTCAACTTCCAGACAAAGGTGTGGGAGAATGC 2333
Query 1308 TCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAACGACT 1367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2334 TCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTGTCAACTACT 2393
Query 1368 TCGGATTCACAAGGGATCAAACACAATCCCGTGGCTGAACCACCGCCAATATTTGGCACT 1427
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2394 TCGGATTCACAAGGGATCAAACACACTCCCGTGGCCGAACCACCGCCAATATTTGGCACT 2453
Query 1428 TTCCCTACTCATTTCATATGAAAGAGT-AA-----G-GAAGTCACTCCATAAAAAGTCGG 1480
||||||| ||||||||| ||||||||| || | |||||||||||||||||||||||
Sbjct 2454 TTCCCTAGTCATTTCATCTGAAAGAGTTAAAAAATGCGAAGTCACTCCATAAAAAGTCGG 2513
Query 1481 GTTGCAT--TC-GATGGAG-----C--TT-GTTTTCAAATAAAATAAAAATG 1521
||||||| || ||||||| | || ||||||||||||||||||||||
Sbjct 2514 GTTGCATCATCCGATGGAGTTTGACAGTTTGTTTTCAAATAAAATAAAAATG 2565
> AT1G27360.1 | Symbols: SPL11 | squamosa promoter-like 11 | chr1:9501971-9503869
FORWARD LENGTH=1504
Length=1504
Score = 1478 bits (800), Expect = 0.0
Identities = 1040/1155 (90%), Gaps = 20/1155 (2%)
Strand=Plus/Plus
Query 229 TAGGTCTATGAAATCAACCCACATCTTGAATGGACTGCAACATGGTATCTCCGTTCCC-G 287
||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||| |
Sbjct 140 TAGGTCTATGAAATCAACCCATATCGTGAATGGACTGCAACATGGTATCTTCG-TCCCAG 198
Query 288 TGGGACTGGGAGAATTTGATCATGTCCAATCCGTCAAAGACTGAAAATGA-A-AAAAGGC 345
||||| |||||| |||||||||||||||||||||||| ||||||| |||| | ||| |
Sbjct 199 TGGGATTGGGAGCATTTGATCATGTCCAATCCGTCAAGGACTGAAGATGACAGCAAA--C 256
Query 346 AGCAATCTACTGAGTGGGAATTTGAAAAAGGTGATGGAATTGAATCTATAGTTCCAGATT 405
||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 257 AGCTACCTACTGAGTGGGAAATTGAAAAAGGTGAAGGAATTGAATCTATAGTTCCACATT 316
Query 406 TCTTAGGCCTTGAGAAAGTCAGTAGTGTCTCTGCCACTAGTTTCTGGCACACTGCTGTAT 465
||| ||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||
Sbjct 317 TCTCAGGCCTTGAGAGAGTCAGTAGTGGCTCTGCCACCAGCTTCTGGCACACTGCTGTAT 376
Query 466 CAAAAAGCTCGCAGTCGACCTCTATCAACTCATCATCTCCCGAGGTCAAACGATGCAATC 525
| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 377 CGAAAAGCTCACAGTCGACCTCTATCAACTCATCATCTCCCGAAGCCAAACGATGCAAGC 436
Query 526 TTGCATCACAAAGTTCCCCTGGAGATTCTTCCAGCAACATAGATTTTGTCCAGGTGAAGG 585
|||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 437 TTGCATCAGAAAGTTCCCCTGGAGATTCTTGCAGCAACATAGACTTTGTCCAGGTGAAGG 496
Query 586 CAT-CCACAGCTCTCGAGGTATCTGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTA 644
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 497 C-TCCCACAGCTCTCGAGGTATCCGTTGCCTCAGCTGAATCAGATCTTTGTTTAAAACTA 555
Query 645 GGAAAACGGACATACTCTGAAGAATTTTGGGGTAGCAACAATAATGACATTTCAGCAGTT 704
||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||
Sbjct 556 GGAAAGCGGACATACTCTGAAGAATACTGGGGTAGAAACAATAATGAAATTTCAGCGGTT 615
Query 705 TCTATGAATTTGTTGACTCCATCTGTTGTTGCTCGGAAGAAAACCAAATCGTGTGGTCAG 764
|||||||| ||||| |||||||||||||| ||| || |||| |||||| ||||||||||
Sbjct 616 TCTATGAAGTTGTTAACTCCATCTGTTGTCGCT-GG--GAAATCCAAATTGTGTGGTCAG 672
Query 765 AGCATGCAAGTTCCGCGTTGCCAAATTGATGGCTGTGAGCTGGATCTCTCATCTGCTAAG 824
||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 673 AGCATGCCAGTCCCGCGTTGCCAAATTGATGGCTGTGAACTGGATCTCTCATCTGCTAAG 732
Query 825 GATTATCATCGCAAGCATAGAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTATTGTG 884
| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 733 GGTTATCATCGTAAGCACAAAGTCTGCGAAAAGCATTCAAAGTGCCCAAAAGTTAGCGTG 792
Query 885 AGTGGCCTGGAACGTCGTTTCTGCCAACAGTGTAGCAGGTTTCATGCTGTATCAGAATTT 944
||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||
Sbjct 793 AGTGGCCTGGAACGTCGGTTCTGCCAACAGTGTAGCAGGTTCCATGCTGTCTCTGAATTT 852
Query 945 GATGAGAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCAAGGCGTCGAAAG 1004
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 853 GATGAGAAGAAACGAAGCTGCCGAAAACGTCTTTCTCATCATAATGCGAGGCGTCGTAAG 912
Query 1005 CCACAAGGAGTATTTCCACTGAATTCAGAGAGGGTGTACGATCGAAGACAGCACACAAGT 1064
||||||||||||||| || ||||| | ||||||||||| |||||||||||||| |||| |
Sbjct 913 CCACAAGGAGTATTTTCAATGAATCCCGAGAGGGTGTATGATCGAAGACAGCATACAAAT 972
Query 1065 ATGTTGTGGAATGGGTTGTCCCTTAACACGAGATCTGAAGAAAAGTATGCATGGGGTAC- 1123
||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 973 ATGTTGTGGAATGGGGTGTCCCTTAACGCGAGATCTGAAGAAATGTATGAATGGGGTAAT 1032
Query 1124 --CACTTATGAGACAAAGCCTACACAGATGGAAAGCGGCTTTACTCTGAGCTTCCAGAGA 1181
||||||||| |||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct 1033 AACACTTATGATACAAAGCCTAGACAAACGGAAAAAAGCTTTACTCTGAGCTTCCAGAGA 1092
Query 1182 GGTAATGGCTCTGAGGAGCAGCAGTTTGCTAGTAGCAGCC-TCTCTTTCTCTGCGTTTCA 1240
||||||||||||||||| |||| | ||||||||||||||| | | || |||| | | |||
Sbjct 1093 GGTAATGGCTCTGAGGACCAGCTGGTTGCTAGTAGCAGCCGTATGTT-CTCTACATCTCA 1151
Query 1241 AACCTCTGGCGGGTTCCCAGCAGGGAAA-TCCAACGTT-CAACTTCCTGACAAAGGTGTG 1298
|||||| || |||||||||||||| ||| ||||| ||| ||||||| || | ||| ||||
Sbjct 1152 AACCTCAGGTGGGTTCCCAGCAGG-AAAGTCCAA-GTTTCAACTTCATGGCGAAGATGTG 1209
Query 1299 GGAGAATGCTCAGGAGGCCTCCATGAATCTCATGATTTCTACAGTGCTCTCTCTCTTCTG 1358
||||||| |||||||| ||||||||||||||| ||| || || |||||||||||||||||
Sbjct 1210 GGAGAATACTCAGGAGTCCTCCATGAATCTCAAGATATCCACCGTGCTCTCTCTCTTCTG 1269
Query 1359 TCAACGACTTCGGAT 1373
||||| ||||||||
Sbjct 1270 TCAACCTCTTCGGAT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5