BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472949
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27450.3 | Symbols: APT1 | adenine phosphoribosyl transferas... 667 0.0
> AT1G27450.3 | Symbols: APT1 | adenine phosphoribosyl transferase
1 | chr1:9531839-9534041 FORWARD LENGTH=1292
Length=1292
Score = 667 bits (361), Expect = 0.0
Identities = 411/435 (94%), Gaps = 3/435 (1%)
Strand=Plus/Plus
Query 556 GGAAAGTTATTTCAGAGGAGTATTCGTTGGAGTATGGAACAGATACGATGGAAATGCATG 615
|||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 793 GGAAGGTTATTTCGGAGGAGTATTCGTTGGAGTATGGAACAGATACGATTGAGATGCACG 852
Query 616 TAGGTGCAGTAGAGCCTGGTGAGCGTGCTATTATTATTGATGACCTCATTGCAACGGGTG 675
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 853 TAGGTGCAGTAGAGCCTGGTGAGCGTGCTATTATTATTGATGACCTCATTGCCACGGGTG 912
Query 676 GGACTCTCGCTGCTGCAATCCGACTACTTGAACGAGTAGGAGTGAAGATTGTTGAGTGTG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 913 GGACTCTCGCTGCTGCAATCCGACTACTTGAACGAGTAGGAGTGAAGATTGTTGAATGTG 972
Query 736 CTTGCGTAATTGAGTTACCAGAGCTTAAGGGAAAGGAGAAACTAGGAGAGACACCGCTAT 795
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 973 CTTGCGTAATTGAGTTACCAGAGCTTAAGGGAAAGGAGAAACTAGGAGAGACGTCGCTAT 1032
Query 796 TTGTTCTTGTAA-GCTCGGCTGCTTAACAAGAAACCGAAAGGGAGGGTTATTGGATCAAG 854
|||||||||||| | |||||||||||||||||||| | ||| || |||||||||||| ||
Sbjct 1033 TTGTTCTTGTAAAG-TCGGCTGCTTAACAAGAAACTGGAAGAGAAGGTTATTGGATCGAG 1091
Query 855 TGTTGATGCTATTTTTCATGTATGGTGAGACATTTTGCTTGGGGGTTTGATACTTGTTGT 914
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||
Sbjct 1092 TGTTGATGCTATTTTTCATGTATGGTGAGACATTTTGCGTGGGA-TTTGATCCTTGTTGT 1150
Query 915 TTCAACTTATAATAATTGGCTCAGACTAGAAAATGGCATTTGAATGTCAGGATTCAATTG 974
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1151 TTCAACTTATCATAATTGGTTCAGACTAGAAAATGGCATTTGAATGTCAGGATTCGATTG 1210
Query 975 CAGTTTCCGATTGTT 989
|||||||| ||||||
Sbjct 1211 CAGTTTCCTATTGTT 1225
Score = 525 bits (284), Expect = 3e-148
Identities = 300/308 (97%), Gaps = 0/308 (0%)
Strand=Plus/Plus
Query 249 GCAGCGAGTCGGGACAGTGAAATGGCGACTGAAGATGTGCAAGATCCGAGAATCGCCAAG 308
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 411 GCAGCCAGTCGGGACAGTGAAATGGCGACTGAAGATGTGCAAGATCCCAGAATCGCTAAG 470
Query 309 ATCGCCTCTTCCATTAGAGTCATCCCCGACTTCCCGAAACCAGGAATCATGTTTCAGGAC 368
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 471 ATTGCCTCTTCCATTAGAGTCATCCCCGACTTCCCTAAACCAGGAATCATGTTTCAGGAC 530
Query 369 ATAACGACGCTTCTTCTAGACACTGAGGCCTTTAAGGATACTATTGCTTTGTTTGTTGAT 428
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATAACGACGCTTCTTCTCGACACTGAGGCCTTTAAGGATACTATTGCTTTGTTTGTTGAT 590
Query 429 AGGTACAAAGATAAAGGCATATCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTCATTTTT 488
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AGATACAAAGATAAAGGCATATCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTCATTTTT 650
Query 489 GGCCCTCCTATTGCGTTGGCTATTGGTGCCAAATTTGTTCCCATGAGGAAGCCCAATAAG 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 651 GGCCCTCCTATTGCGTTGGCTATTGGTGCCAAATTTGTTCCCATGAGGAAGCCCAAGAAG 710
Query 549 CTACCTGG 556
||||||||
Sbjct 711 CTACCTGG 718
Score = 379 bits (205), Expect = 3e-104
Identities = 238/253 (94%), Gaps = 5/253 (2%)
Strand=Plus/Plus
Query 1 AGACTTGAAAAGTCATTGATCACGGCATTTGTCCATTATTCCGTTTTTAAAGTAATTTAC 60
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 112 AGACTTGAAAAGTCATTGATCACGGCTTTTGTCCATTATTCCGTGTTTAAAGTAATTTAC 171
Query 61 ATTCTCTTTTAAGATCTCTCAGTCCAAAGACGATGCAAACAATAAT--TT-CTCCACTTG 117
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 172 ATTCTCTTTTAAGATCTCTCAGTCCAAAGACAATGCAAACAATAATAATTTCTCCACTTG 231
Query 118 TTTCTCATCGTCTCTGTCTTGCTCCTGCTGTTCCTCGCTACCGTCTTCCCAACAACTACC 177
|||||||||||||||||||||||| |||||||||| || ||||||||| ||||||| |||
Sbjct 232 TTTCTCATCGTCTCTGTCTTGCTCGTGCTGTTCCTTGCAACCGTCTTCTCAACAACCACC 291
Query 178 ACCGTGCTCCTCCTTCGATCCGTCTCTCAAACCACCGTTCCACCACCTCAC-CCTGCCTC 236
|||||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||
Sbjct 292 ACCGTGCTCCTCCTTCGATCCGCCTCTCAAACCACCGTTCAACCACCTCACTCC-GCCTC 350
Query 237 TTCTCCTCCGCCG 249
|||||||||||||
Sbjct 351 TTCTCCTCCGCCG 363
Score = 76.8 bits (41), Expect = 4e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 989 TTAATAAGATGTTATGGGTTTTATTTATAGAATCAAGTTGTAAT 1032
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1243 TTAATAAGGTGTTATGGGTTTTATTTATAGAATCAAGTTGTAAT 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5