BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472978

Length=915
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27730.1 | Symbols: STZ, ZAT10 | salt tolerance zinc finger ...  1312    0.0  


> AT1G27730.1 | Symbols: STZ, ZAT10 | salt tolerance zinc finger 
| chr1:9648141-9649073 REVERSE LENGTH=933
Length=933

 Score = 1312 bits (710),  Expect = 0.0
 Identities = 827/880 (94%), Gaps = 21/880 (2%)
 Strand=Plus/Plus

Query  42   AAATCTTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACTTCACCAAGATTAGCTT  101
            ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  66   AAATCCTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACATCACCAAGATTAGCTT  125

Query  102  CTCCGATTCCTCCTTTGTTCCAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACCA  161
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  126  CTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAA  185

Query  162  AGGGAAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACCGAGGAGG  221
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  186  AGGGTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAG  245

Query  222  AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  246  AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC  305

Query  282  CGGCGGTAGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGA-GTTTCTCGTCTTAC  340
            ||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct  306  CGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACG-TTCTCTTCTTAC  364

Query  341  CAAGCTCTCGGTGGCCACAAGGCAAGCCACCGTAAAAACTTATCACAGACTCACTCCGGC  400
            |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  365  CAAGCTCTCGGTGGTCACAAGGCAAGCCACCGTAAGAACTTATCACAGACTCTCTCCGGC  424

Query  401  GGAGGAGGAGATGATCAGTCGACGTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA  460
               |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct  425  ---GGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA  481

Query  461  AGTGGGAAATCACATGTTTGCACGATCTGTCACAAGTCTTTTCCTTCCGGTCAAGCTCTC  520
            |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  482  AGTGGGAAATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTC  541

Query  521  GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACA--A-CACTAGTAGCGTGTCA  577
            ||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||| 
Sbjct  542  GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACACTAGTAGCGTGTCC  601

Query  578  AACTCCGAAGGTGCGGGGTCCACTAGCCACGTCAGCAGCAGCCACCGTGGATTTGACCTT  637
            |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| 
Sbjct  602  AACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTC  661

Query  638  AATATCCCTCCGATCCCTGAATTCTCAACGGTCAACGGAGACGACGAAGTGATGAGCCCT  697
            || ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct  662  AACATCCCTCCGATCCCTGAATTCTCGATGGTCAACGGAGACGACGAAGTCATGAGCCCT  721

Query  698  ATGCCGGCGAAGAAGGCC-CGGTTTGACTTTCCGGTCAAACTTCAACATTGAGGAAATT-  755
            ||||||||||||||| || |||||||||||||||||||||||||||| || |||||||| 
Sbjct  722  ATGCCGGCGAAGAAG-CCTCGGTTTGACTTTCCGGTCAAACTTCAACTTTAAGGAAATTT  780

Query  756  ACTTAGACGATAAGATTTGTTTTTTCGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG  815
            ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct  781  ACTTAGACGATAAGATTT-------CGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG  833

Query  816  TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTTGTTCTTGTTCTTTCAT  875
            ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct  834  TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTT---CTTGTTCTTTCAT  890

Query  876  TTTAAATATTATTCAACCGATTCTTTACCACATAGTTTAC  915
            |||||| |||||| |||||||||||||||||||| |||||
Sbjct  891  TTTAAAAATTATTAAACCGATTCTTTACCACATATTTTAC  930



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44708390830


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5