BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472978
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27730.1 | Symbols: STZ, ZAT10 | salt tolerance zinc finger ... 1312 0.0
> AT1G27730.1 | Symbols: STZ, ZAT10 | salt tolerance zinc finger
| chr1:9648141-9649073 REVERSE LENGTH=933
Length=933
Score = 1312 bits (710), Expect = 0.0
Identities = 827/880 (94%), Gaps = 21/880 (2%)
Strand=Plus/Plus
Query 42 AAATCTTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACTTCACCAAGATTAGCTT 101
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 66 AAATCCTCAGAATCTTTAACTTAATGGCGCTCGAGGCTCTTACATCACCAAGATTAGCTT 125
Query 102 CTCCGATTCCTCCTTTGTTCCAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACCA 161
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 126 CTCCGATTCCTCCTTTGTTCGAAGATTCTTCAGTCTTCCATGGAGTCGAGCACTGGACAA 185
Query 162 AGGGAAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACCGAGGAGG 221
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 186 AGGGTAAGCGATCTAAGAGATCAAGATCCGATTTCCACCACCAAAACCTCACTGAGGAAG 245
Query 222 AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGTATCTAGCTTTTTGCCTCATGCTTCTCGCTCGCGACAACCGTCAGCCTCCTCCTCCTC 305
Query 282 CGGCGGTAGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGA-GTTTCTCGTCTTAC 340
||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 306 CGGCGGTGGAGAAGTTGAGCTACAAGTGTAGCGTCTGCGACAAGACG-TTCTCTTCTTAC 364
Query 341 CAAGCTCTCGGTGGCCACAAGGCAAGCCACCGTAAAAACTTATCACAGACTCACTCCGGC 400
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 365 CAAGCTCTCGGTGGTCACAAGGCAAGCCACCGTAAGAACTTATCACAGACTCTCTCCGGC 424
Query 401 GGAGGAGGAGATGATCAGTCGACGTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA 460
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 425 ---GGAGGAGATGATCATTCAACCTCGTCGGCGACAACCACATCCGCCGTGACTACTGGA 481
Query 461 AGTGGGAAATCACATGTTTGCACGATCTGTCACAAGTCTTTTCCTTCCGGTCAAGCTCTC 520
|||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 482 AGTGGGAAATCACACGTTTGCACCATCTGTAACAAGTCTTTTCCTTCCGGTCAAGCTCTC 541
Query 521 GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACA--A-CACTAGTAGCGTGTCA 577
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 542 GGCGGACACAAGCGGTGCCACTACGAAGGAAACAACAACATCAACACTAGTAGCGTGTCC 601
Query 578 AACTCCGAAGGTGCGGGGTCCACTAGCCACGTCAGCAGCAGCCACCGTGGATTTGACCTT 637
|||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 602 AACTCCGAAGGTGCGGGGTCCACTAGCCACGTTAGCAGTAGCCACCGTGGGTTTGACCTC 661
Query 638 AATATCCCTCCGATCCCTGAATTCTCAACGGTCAACGGAGACGACGAAGTGATGAGCCCT 697
|| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 662 AACATCCCTCCGATCCCTGAATTCTCGATGGTCAACGGAGACGACGAAGTCATGAGCCCT 721
Query 698 ATGCCGGCGAAGAAGGCC-CGGTTTGACTTTCCGGTCAAACTTCAACATTGAGGAAATT- 755
||||||||||||||| || |||||||||||||||||||||||||||| || ||||||||
Sbjct 722 ATGCCGGCGAAGAAG-CCTCGGTTTGACTTTCCGGTCAAACTTCAACTTTAAGGAAATTT 780
Query 756 ACTTAGACGATAAGATTTGTTTTTTCGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG 815
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 ACTTAGACGATAAGATTT-------CGTTTGTATACTGTTGAGAGTTGTGTAGGAATTTG 833
Query 816 TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTTGTTCTTGTTCTTTCAT 875
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 TTGACTGTACATACCAAATTGGACTTTGACTGATTCCAATTCTT---CTTGTTCTTTCAT 890
Query 876 TTTAAATATTATTCAACCGATTCTTTACCACATAGTTTAC 915
|||||| |||||| |||||||||||||||||||| |||||
Sbjct 891 TTTAAAAATTATTAAACCGATTCTTTACCACATATTTTAC 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5