BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472983 Length=1835 Score E Sequences producing significant alignments: (Bits) Value AT1G27760.3 | Symbols: SAT32, ATSAT32 | interferon-related deve... 2479 0.0 > AT1G27760.3 | Symbols: SAT32, ATSAT32 | interferon-related developmental regulator family protein / IFRD protein family | chr1:9668584-9671616 FORWARD LENGTH=1931 Length=1931 Score = 2479 bits (1342), Expect = 0.0 Identities = 1678/1828 (92%), Gaps = 71/1828 (4%) Strand=Plus/Plus Query 1 GTTTCTTCCTTTGGCATAGACGAAAGTCTG-AAActcttctctcttgacctctttctctc 59 ||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||||| Sbjct 1 GTTTCTTCCTTTGGCATCGACGAAAGTCTGAAAACTCTTTTCTCTCCACCTCTTTCTCTC 60 Query 60 tcGATACCCTAAAC-CAAAATCGCCTCTTTAATGGATAAATCGCCTCTCCGATCTCA--- 115 | ||||| |||| ||||||| ||||||||||||||| |||||||||||||||||| Sbjct 61 T---TACCCCAAACACAAAATCTCCTCTTTAATGGATATATCGCCTCTCCGATCTCATTC 117 Query 116 -T--TC-------T-T-CCAAACTTTTATTG--C-TCTTCTTTTGTAGTTTTCGTG---C 157 | || | | ||||||| |||||| | ||||||||||||||||||||| | Sbjct 118 TTCCTCGTTTTTATCTGCCAAACTCTTATTGCTCTTCTTCTTTTGTAGTTTTCGTGCTTC 177 Query 158 TTCGA-TTC--CTTCTTCAGTTATTTCCCATCGTTGTAATCCTTCTA-CTTTTCAGTTTC 213 ||||| ||| ||||||||||| ||||||||||| |||||||||||| | |||| ||||| Sbjct 178 TTCGATTTCTTCTTCTTCAGTTGTTTCCCATCGTCGTAATCCTTCTAGC-TTTCGGTTTC 236 Query 214 TCTT-ATAATTCCCTTTGAA-TC---AAT-TTC--C--GCAA-AT----AATTGAATCAG 258 | || ||||||||||||||| || | ||| | ||| | || | |||||| Sbjct 237 T-TTGATAATTCCCTTTGAATTCGTTTTTCTTCTTCTTTCAATTTCCGCAAAT-AATCAG 294 Query 259 CCGCCGATAAGACAAAATCATGGGGAGGAAATCTCAGCGTAAGAACGCGACAATGTTTGA 318 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 CCGCCGATAAG--ATAATCATGGGGAGGAAATCTCAGCGTAAGAACGCGACAATGTTTGA 352 Query 319 TAGTGATGATGATACAAGTAGTGTAAGCTCTTCCTCCACCATGCCATCTGAGAGGGTGTT 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 353 TAGTGATGATGATACAAGTAGTGTAAGCTCTTCCTCCACCATGCCATCTGAGAGATTGTT 412 Query 379 GAATCCCGGTATGGATGAAGTTACGGTTCACAAAGATGCTTTGTTGGATCAATCCCTTGA 438 |||||| ||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| Sbjct 413 GAATCCTGGTATGGATGAAGTTACTGTTCTCAAGGATGCTTTGTTAGATCAATCCCTTGA 472 Query 439 TGCTCTCTATGAGAAAAGGAGTTCAACTAGAGAGCAAGCTTTGGCCTCCATTGTTGACGC 498 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 473 TGCTCTCTATGAGAAAAGGAGCTCAACTAGAGAGCAAGCTTTGGCCACCATTGTTGACGC 532 Query 499 ATTCAACAGCGACTTGCAATATGAGTTTGTGGAAAAGAAGTTTGCCACTTTATTGCACCA 558 ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 533 ATTTAACAGCGACTTGCAGTATGAGTTTGTTGAAAAGAAGTTTGCCACTTTATTGCACCA 592 Query 559 GTGTTTACACTGCACTAAGAAAGGGTCTACTAAGGAGACCGCATTAGCATCTCATGTCAT 618 ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| Sbjct 593 GTGTTTACACTGCACCAAGAAAGGGTCTACTAAGGAGACTTCATTAGCAACTCATGTCAT 652 Query 619 TGGGTTGCTAGCATTGACTGTTGGACTAGGGGATCAAGCACAAGAGATTTTGGAAGAATC 678 |||||||||||| || ||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct 653 TGGGTTGCTAGCGTTAACTGTTGGACTCGGGGATCATGCACAAGAGGTTTTGGAAGAATC 712 Query 679 TGTCACTCCTCTTTCTCAAGCCCTTAAATCTGGTCGTGAAATCTTGAAAATAACTTCGAT 738 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 TGTCACTCCTCTGTCTCAAGCCCTTAAATCTGGTCGTGAAATCTTGAAAATAACTTCGAT 772 Query 739 TCTTGAGTGTTTAGCAGTCATAACCTTTGTTGGCGGGAATGATCCAGAGCAAACCGAGAG 798 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 773 ACTTGAGTGTTTAGCAGTCATAACCTTCGTTGGCGGGAATGATCCAGAGCAAACCGAGAA 832 Query 799 ATCTATGCAAATAATCTGGCAAATGATCCACCCCAAACTAGGGTCTAATGTTGTGGCAAC 858 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 ATCTATGCAGATTATCTGGCAAATGATCCACCCCAAACTAGGGTCTAATGTTGTGGCAAC 892 Query 859 TAAACCTTCACCTGCTGTAATTAGTGCTGTTGTCTCTTCCTGGGCGTTTCTGCTCACAAC 918 ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 893 TAAACCTTCACCTGCTGTAATAAGTGCTGTTGTATCTTCCTGGGCTTTTCTGCTCACAAC 952 Query 919 AGTTGATCGGTGGACGCTAGGTCCTAAAATTTTTCAAGAGACCGTAACTTATCTCTCTAC 978 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 953 AGTTGATCGGTGGACTCTAGGTCCTAAAATTTTTCAAGAGACTGTAACTTATCTCTCTAC 1012 Query 979 ACTGTTGGAAAAAGATGACCGATCTGTACGTATAGCTGCTGGTGAAGCGCTTGCAGTGAT 1038 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1013 ATTGTTGGAAAAGGATGACCGATCTGTACGTATAGCTGCTGGTGAAGCGCTTGCAGTAAT 1072 Query 1039 ATATGAGTTGGGAACTCTAGAGAAGTTTGCTGCCGAAGTCAAAGGGTCTGCTAATGGATC 1098 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1073 ATATGAGTTGGGAACTCTAGAGAAGTTCGCTGCCGAAGTCAAAGGGTCTGCTAATGGATC 1132 Query 1099 AGTGAAAGAAGGAAGTGTGTCCCAGGAGGCATTGATGCACATGCATGGCTTGAAAGCTAA 1158 ||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 1133 AGTGAAAGAAGGAGGTGTCTCTCAGGAAGCATTGATGCACATGCATGGCTTGAAAGCTAA 1192 Query 1159 AGTCACTAAACAAGTTAGAGAGCTCTCTGCGGAGGCAGGTGGTAAAGGTTCTGCTAAGAA 1218 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1193 AGTCACTAAACAAGTTAGAGAGCTCTCTGTAGAGGCAGGTGGTAAAGGTTCTGCTAAGAA 1252 Query 1219 AGATCTCAACACCCAACGGAATTTGTTCAAAGATCTTGTTGAATTTCTTGAGGATGGGTA 1278 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1253 AGATCTCAACACCCAACGAAATTTGTTCAAAGATCTTGTTGAATTTCTTGAGGATGGATA 1312 Query 1279 CGCTCCTGAAACCTCAACAAAAGTTGGAGGGGACTATTTACAGACGTCAACGTGGTATCA 1338 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1313 TGCTCCTGAAACCTCAACAAAAGTCGGAGGGGACTATTTACAGACGTCAACGTGGTATCA 1372 Query 1339 GATGATACAGTTAAATTATTTGAAGCATTTCCTTGGGGGCGGCTTTATTAAGCATATGCA 1398 |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1373 GATGATACAGTTGAATTATTTGAAGCATTTCCTAGGGGGTGGCTTTATTAAGCATATGCA 1432 Query 1399 GGAGAATGAATTCCTTCATGATGTATTTAGTTTCACTCCAAAGAAGATTGGTGGAGGAAA 1458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1433 GGAGAATGAATTCCTTCATGATGTATTTAGTTTCACTCCAAAGAAGATTGGTGGAGGAAA 1492 Query 1459 GTTGTCTAATGACGAAAAGAGGTTGTTTAAATCACCAAACTCAGCTCTCAACAAAGCAAG 1518 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1493 GTTGTCTAATGACGAAAAGAGGTTGTTTAAATCACCAAACTCAGCTCTTAACAAAGCAAG 1552 Query 1519 AACGCAGTTCCTGGCCAAGCAGAGGATGTTAGCTAAGAATATGAACGTTGGGCATTACGC 1578 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1553 AACGCAGTTCCTGGCCAAGCAAAGGATGTTAGCTAAGAATATGAACGTTGGGCATTACGC 1612 Query 1579 AGCGACAGCAATGATGGAGGAAGAATGATCGCTTTTCAATTGATTTT-GAAGCTT--TG- 1634 ||| ||||||||| | |||||||||||| ||| | ||||||||||| |||| | || Sbjct 1613 AGCTACAGCAATG--G-AGGAAGAATGATGGCTCTACAATTGATTTTTGAAGAATGATGG 1669 Query 1635 CACACTCATCTGCTGCTTTTGGAAAGTGTTGTTGTATC-ATTACTACTACACTTTTTCTT 1693 ||||||||||||||||||||||||| ||||||||| || |||| ||| || |||||||| Sbjct 1670 CACACTCATCTGCTGCTTTTGGAAAATGTTGTTGT-TCCATTAGTAC-AC--TTTTTCTT 1725 Query 1694 GTTTCATGTTTTTGAT---A-A-TTGGTTCCATCATATTATAACCAACACTTAGAAATCT 1748 |||||||||||||||| | | ||||||||| |||||||||||||| ||||||||| | Sbjct 1726 GTTTCATGTTTTTGATTTGATAATTGGTTCCA--ATATTATAACCAACTCTTAGAAATGT 1783 Query 1749 CTTTTCAC--ATAACAATTTTCGACCGT 1774 ||||||| |||||||||||||||||| Sbjct 1784 CTTTTCATTTATAACAATTTTCGACCGT 1811 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90812785905 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5