BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473019 Length=1259 Score E Sequences producing significant alignments: (Bits) Value AT1G28120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ovarian t... 1801 0.0 > AT1G28120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:9812959-9815544 REVERSE LENGTH=1380 Length=1380 Score = 1801 bits (975), Expect = 0.0 Identities = 1173/1264 (93%), Gaps = 31/1264 (2%) Strand=Plus/Plus Query 18 CAACCCAATCTTTTCTTCAATCGATCTTCGTTTCAGGTAAATCCGCTAATAAGCTAGG-A 76 ||| |||||||||||||||||||||||||||||| | | || | |||||||||||| | Sbjct 117 CAATCCAATCTTTTCTTCAATCGATCTTCGTTTCTGATCAAGCTAATAATAAGCTAGGAA 176 Query 77 -AGAGTTTGGTG-A--AGTGAGGATGCAGAATCAGAATCAGA--AT-CAGGATGAAGCGG 129 ||||||| ||| | ||||| |||||||||||||| | | | | |||||||||||| Sbjct 177 GAGAGTTTAGTGAAGTAGTGAAGATGCAGAATCAGATTGATATGGTGAAGGATGAAGCGG 236 Query 130 AAGTAGCTGCATCGATTTCGGCAATTAAGGGTGAAGAATGGGGAAATTGTTCATCACTCG 189 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | Sbjct 237 AAGTAGCTGCATCGATTTCAGCAATTAAGGGTGAAGAATGGGGAAATTGTTCATCAGT-G 295 Query 190 AAGATGCTTTGGATCAACCATCTTTTCAAGAAGATGAATCTGCTAAAGTTCCTTATGTTG 249 || ||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 296 --GA------AGATCAACCATCTTTTCAAGAAGAAGAAGCTGCTAAAGTTCCTTATGTTG 347 Query 250 GTGATAAGGAACCTCTCTCTAGTTTAGCTGCAGAGTACCAATCAGGGAGTCCCATTTTGC 309 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 348 GTGATAAGGAACCTCTGTCTAGTTTAGCTGCAGAGTATCAATCAGGGAGTCCCATTTTGC 407 Query 310 TCCAGAAGATAAAGATACTGGACAGTCAATATATCGCAATCCGGCGAACAAGAGGCGATG 369 | ||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 408 TGGAGAAGATTAAGATACTGGACAGTCAATATATCGGAATCCGGCGAACAAGAGGAGATG 467 Query 370 GAAATTGCTTCTTCCGAAGTTTTATGTTCTCTTACCTTGAGCACATTTTGGAATCACAAG 429 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 468 GAAATTGCTTCTTCCGAAGTTTTATGTTCTCTTACCTTGAGCATATATTGGAATCACAAG 527 Query 430 ATCGTGCTGAAGTCGATCGTATCAAGGTCAATGTTGAGAAATGTAGAAAGACTCTGCAAA 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 528 ATCGTGCTGAAGTCGATCGTATCAAGGTCAATGTTGAGAAATGTAGAAAGACTCTGCAAA 587 Query 490 ACTTAGGTTATACAGATTTTACATTTGAGGACTTCTTTGCGCTGTTCCTTGAGCAACTAG 549 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 588 ACTTAGGTTATACAGATTTTACATTTGAGGACTTCTTTGCGTTGTTCCTTGAGCAACTAG 647 Query 550 ATGACATTCTCCAAGGAACTGAGGAGTCTATAAGCTACGATGAGCTGGTTAACAGGAGTA 609 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 648 ATGACATTCTCCAAGGAACTGAAGAGTCTATAAGCTACGATGAGCTGGTTAACAGAAGTA 707 Query 610 GAGATCAGTCAGTCTCAGACTACATTGTAATGTTCTTTAGGTTTGTTACTGCTGGGGATA 669 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 708 GAGATCAGTCAGTCTCAGATTACATTGTAATGTTCTTTAGGTTTGTTACTGCTGGTGATA 767 Query 670 TACGAACGCGTGCAGATTTTTTCGAGCCCTTTATAACAGGCTTATCAAATACAACAGTGG 729 ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 768 TACGAACGCGTGCCGATTTTTTCGAGCCTTTTATAACAGGCTTATCAAATGCAACAGTGG 827 Query 730 ATCAGTTTTGCAAGTCCTCGGTCGAACCAATGGGGGAAGAGAGTGACCATATTCACATAA 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 ATCAGTTTTGCAAGTCCTCGGTCGAACCAATGGGGGAAGAGAGTGACCATATTCACATAA 887 Query 790 CTGCTTTGTCAGACGCGCTCGGTGTTGCAATCCGGGTTGTATATCTTGACCGTAGCTCAT 849 |||||||||| ||||| || |||||||||||||| ||||| ||||||||||||||||||| Sbjct 888 CTGCTTTGTCGGACGCACTTGGTGTTGCAATCCGTGTTGTGTATCTTGACCGTAGCTCAT 947 Query 850 GTGATAATGGAGGCGTCACTGTGAATCATCATGACTTTGTTCCTGTGGGCACTACCAATG 909 |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 948 GTGATAGTGGGGGCGTCACTGTGAATCATCATGACTTTGTTCCTGTGGGCATTACCAATG 1007 Query 910 AGAAAGA--A-GAAGCTTCTGCTCCATTTATAACCTTGCTGTATCGTCCAGGCCATTACG 966 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 AGAAAGATGAAGAAGCTTCTGCTCCATTTATAACCTTGCTGTATCGTCCAGGCCATTACG 1067 Query 967 ATATCCTCTACCCCAAGCCATCTTGTAAGGTATCAGACAATGTGGGAAAATGATCATTTG 1026 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1068 ATATCCTCTACCCCAAGCCATCTTGTAAGGTATCAGACAATGTGGGGAAATGATCATTTG 1127 Query 1027 ACAAATCGTAAATCGCATTAAGAGATGTTTACAAAAA-CTGTGGTAATATGGATTCATGT 1085 ||| |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| Sbjct 1128 ACATATCGTAAATCGCATTAGGAGACGTTTACAAAAAACTGTGGTAATATGGATTCATGT 1187 Query 1086 GGATGAAACCATGGAACAATCAACAATTACATAATCTATTTGC-TC--GATTATGATAAA 1142 |||||||||||||||||||||||||||||| ||| |||||| | |||||||||||| Sbjct 1188 GGATGAAACCATGGAACAATCAACAATTACCCCATCGATTTGCATTTTGATTATGATAAA 1247 Query 1143 AGAACCCTTTTTGCAACATTATAGAATGGACCGTCTCTTTACTTTGATACTGTCTTGTAT 1202 |||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| Sbjct 1248 AGAACCCTTTTTGCAACACTATAGAATGGACCGTCTCTTTACTTTGATATTGCCTTGTAT 1307 Query 1203 TTTTCATGA-T-A-G-TA-T--CCTTCGTGATATTTCTGATGAGCAAGTGGAACCAAAGG 1255 ||||||||| | | | || | |||| ||||||||||||||||||||||||| |||||| Sbjct 1308 TTTTCATGAATCATGATAATATCCTTTATGATATTTCTGATGAGCAAGTGGAATCAAAGG 1367 Query 1256 GTTT 1259 |||| Sbjct 1368 GTTT 1371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61897271985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5