BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473042
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28310.2 | Symbols: | Dof-type zinc finger DNA-binding fami... 2560 0.0
AT5G65590.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 106 8e-22
AT3G52440.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 97.1 5e-19
AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 87.9 3e-16
> AT1G28310.2 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:9911898-9913698 REVERSE LENGTH=1627
Length=1627
Score = 2560 bits (1386), Expect = 0.0
Identities = 1561/1639 (95%), Gaps = 38/1639 (2%)
Strand=Plus/Plus
Query 1 CCAGAAGAAGAAGATGCCTATCATCAGCTCTCCCAACACCAATCCACTGGCGAGTATGCA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCAGAACAAGAAGATGCCTATCATCAGCTCTCCCAACACCAATCCACTGGCGAGTATGCA 60
Query 61 AAGCAAGAACATGATCGTGGCTTCATCTCAT---CAG---------CAGCAACCGCAGCA 108
||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 61 AAGCAAGAACATGATCGTGGCTTCATCTCATCAGCAGCAACAACAACAGCAACCGCAGCA 120
Query 109 GCCACAACCGCAACTTAAATGCCCTCGTTGTGATTCTTCCAACACAAAGTTCTGTTACTA 168
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 GCCACAACCGCAACTTAAATGCCCTCGTTGCGATTCTTCCAACACAAAGTTCTGCTACTA 180
Query 169 CAACAACTACAGCCTCTCTCAGCCACGGCACTTTTGCAAGGCTTGCAAGAGGTACTGGAC 228
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACAACTACAGCCTCTCTCAACCACGGCACTTTTGCAAGGCTTGCAAGAGGTACTGGAC 240
Query 229 GAGAGGTGGGACTCTCAGGAACGTTCCCGTAGGCGGTAGCTACCGGAAAAACAAACGGGT 288
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 241 GAGAGGTGGGACTCTCAGGAACGTTCCCGTAGGGGGTAGCTACCGGAAGAACAAACGTGT 300
Query 289 AAAGCGGCCATCAAACGCAACCGCAACCGCTGCCTCCACCGTCTCGACGACTACTTCTTT 348
|||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 301 AAAGCGGCCATCAACCGCAACCACAACCACTGCCTCCACCGTCTCGACGACTAATTCTTC 360
Query 349 ATCCCCTAATAACCCTCATCAGATCTCTCATTTCTCTTCCATGAATCATCATCCCTTGTT 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 ATCCCCTAATAACCCTCATCAGATCTCTCATTTCTCTTCCATGAATCATCATCCTTTGTT 420
Query 409 CTATGGTTTATCAGATCATCTGAGCAGTTG---TAATAATCTTCCAATGATTCCAAGCCG 465
||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 421 CTATGGTTTATCAGATCATATGAGCAGTTGTAATAATAATCTTCCAATGATCCCAAGCCG 480
Query 466 TTTCAGTGATTCTTCAAAGACTTCG-TCAACAAGTGGTTTAGAGAGTGAGTTTCTCTCAT 524
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 481 TTTCAGTGATTCTTCAAAGACTT-GTTCATCAAGTGGTTTAGAGAGTGAGTTTCTCTCAT 539
Query 525 CTGGGTTTAGCAGTCTTAGTGCTCTTGGATTAGGGCATCCGCATCATATGAGTCATGACC 584
|||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 540 CTGGTTTTAGCAGTCTTAGTGCTCTTGGATTAGGGCTTCCGCATCAGATGAGTCATGACC 599
Query 585 ACACCATTAATGGTAGCTTCATCAACAACTCCACAACAAACAAACtctttcttctatcgg 644
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 ACACCATTAATGGTAGCTTCATCAACAACTCCACAACAAACAAACCCTTTCTTCTATCGG 659
Query 645 gtctattcggatcctcgatgtcttcttcttcttcttctcctactcttctCCAGCACCCAA 704
|||||||||||||||||||| |||||||| | | ||||||||||||||||||||
Sbjct 660 GTCTATTCGGATCCTCGATG------TCTTCTTC-T-T-CTACTCTTCTCCAGCACCCAC 710
Query 705 ATAAACCCATGAACAATGGTGGTGACATGTTGGGACAATCCCATCTCCAAACCCTAGCAT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATAAACCCATGAACAATGGTGGTGACATGTTGGGACAATCCCATCTCCAAACCCTAGCAT 770
Query 765 CACTTCAAGATTTGCATGTTGGAGGTAACAATGAAGATATGAAGTACAAAGAAGGAAAGC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CACTTCAAGATTTGCATGTTGGAGGTAACAATGAAGATATGAAGTACAAAGAAGGAAAGC 830
Query 825 TTGATCAGATCTCTGGGAACATCAATGGGTTCATGTCATCATCATC-T-TT-GGATCCTT 881
|||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 831 TTGATCAGATCTCTGGGAACATCAATGGGTTCATGTCATCATCATCATCTTTGGATCCTT 890
Query 882 CAAACTACAACAACATGTGGAATAATGCAAGTGTTGTCAATGGAGCATGGCTTGATCCAA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CAAACTACAACAACATGTGGAATAATGCAAGTGTTGTCAATGGAGCATGGCTTGATCCAA 950
Query 942 CAAATAATAACGTTGGATCCTCCCTCACCTCCTTGATATAAACCAAAACTTTGGTTATAT 1001
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 951 CAAATAATAACGTTGGATCCTCCCTCACCTCTTTGATATAAACCAAAACTTTGGTTATAT 1010
Query 1002 GATCTATAACTAGCTAGGGTTTATCttt-tttt---cctttttgttttGAGATGAGAGAA 1057
||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||
Sbjct 1011 GATCTATAACTAGGTAGGGTTTATCTTTCTTTTTTTCCTTTTTGTTATGAGATGAGAGAA 1070
Query 1058 GAAGCTTGGATCAGAGAGATCTAATCAGGGGAAATGTTGATCTTGGCACTATAAAGCTCC 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GAAGCTTGGATCAGAGAGATCTAATCAGGGGAAATGTTGATCTTGGCACTATAAAGCTCC 1130
Query 1118 CTCGGATCCTCTTCATCTCACCATCTCAATCATCTTCCTTCGCGTAGTTCAAGGAAAAAC 1177
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1131 CTCGGATCCTCTTCATCTCACCATCTCAATCATCTTCCTTCGCGTAGTTCAACAAAAAAC 1190
Query 1178 AAAAGGGGTTCAAGATTGGTTCAAGGTTTACTATGGTCTACT-GTTAAGTTTACTCGAGG 1236
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1191 AAAAAGGGTTCAAGATTGGTTCAAGGTTTACTATGGTCT-CTTGTTAAGTTTACTCGAGG 1249
Query 1237 TAAATGATATGTGTATGTACATAATATGGTCCTGACTTTGATCtttttttctttt-tctt 1295
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1250 TAAATGATATGTGTATGTACATAATATGGTCCTGACTTTGATCTTTTTC-CTTTTCTCTT 1308
Query 1296 tCCCATCTATGTAATTCTAAGGTCCACCACATGGGTTGGTGTTTCTTTTCATTTGGATTA 1355
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1309 TCCCATCTGTGTAATTCTAAGGTCCACCACATGGGTTGGTGTTTCTTTTCATTGGGATTA 1368
Query 1356 GGAGGGTATATTTGGCTTAATTTGGGTTTCTCATGGGGTCCGAGAACTCAATAGtttagt 1415
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1369 GGAGGGTATATTTGGATTAATTTGGGTTTCTCATGGGGTCAGAGAACTCAATAGTTTAAT 1428
Query 1416 ttcaagttttatatcttttttttagtttcacatttctttttt-GGTGTGGCTTTCATTGG 1474
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1429 TTCAAGTTTTATATCTGTTTTTTAGTTTCACATTTCTTTTTTTGGTGTGGCTTTCATTGG 1488
Query 1475 GTATACAAACAGAGGGAGGGGTGTGGTTTTCTATTGTTATAACTTTGGTTATTCATGTAT 1534
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1489 GTATACAAACAGAGGGAGGGGTGTGGTTTTGTGTTGTTATAACTTTTGTTATTCATGTAT 1548
Query 1535 GAGTTATGTTCTTACGGTGCTTTTGGAAACATGCATGTTTGTGTATATATACGTAAATGT 1594
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1549 GAGTTATGTTCTTACGGTGCTTTTGGATACATGCATGTTTGTGTATATATATTTAAATGT 1608
Query 1595 GGATGACTTGAATTGGCTG 1613
|||||||||||||||||||
Sbjct 1609 GGATGACTTGAATTGGCTG 1627
> AT5G65590.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr5:26211746-26213136 REVERSE LENGTH=1391
Length=1391
Score = 106 bits (57), Expect = 8e-22
Identities = 130/164 (79%), Gaps = 10/164 (6%)
Strand=Plus/Plus
Query 125 AAATGCCCTCGTTGTGATTCTTCC-AACACAAAGTTCTGTTACTACAACAACTACAGCCT 183
|||||||||||||| | || ||| |||||||||||||||||||||||||||||||| ||
Sbjct 226 AAATGCCCTCGTTGCAACTC-TCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCT 284
Query 184 CTCTCAGCCACGGCACTTTTGCAAGGCTTG-CAAGAGGT-ACTGGACGA-GAGGTGG-GA 239
|||||| || || ||||| ||||| |||| | | || ||||||| | | || || |
Sbjct 285 CTCTCAACCTCGTCACTTCTGCAAATCTTGTC--GCCGTTACTGGAC-ACGTGGCGGTG- 340
Query 240 CTCTCAGGAACGTTCCCGTAGGCGGTAGCTACCGGAAAAACAAA 283
|||| || ||||| ||| | || ||| | | |||||||| ||||
Sbjct 341 CTCTAAGAAACGTCCCCATCGGTGGTGGTTGCCGGAAAACCAAA 384
> AT3G52440.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr3:19435447-19436190 FORWARD LENGTH=744
Length=744
Score = 97.1 bits (52), Expect = 5e-19
Identities = 101/124 (81%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 149 AACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCCACGGC-ACTTTTGCAA 207
||||||||||||||||||||||||||||| |||||| ||||||| || | |||| |||||
Sbjct 100 AACACAAAGTTCTGTTACTACAACAACTATAGCCTCACTCAGCCTCG-CTACTTCTGCAA 158
Query 208 -GGCTTGCAAG-AGGTACTGGACGAGAGGTGGGACTCTCAGGAACGTTCCCGTAGGCGGT 265
|||| || | || || ||||| | |||||| | ||| | || ||||| |||||||||
Sbjct 159 AGGCT-GCC-GCAGATATTGGACCAAAGGTGGTTCCCTCCGCAATGTTCCTGTAGGCGGT 216
Query 266 AGCT 269
|||
Sbjct 217 GGCT 220
> AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:24006992-24008694 FORWARD LENGTH=1589
Length=1589
Score = 87.9 bits (47), Expect = 3e-16
Identities = 92/113 (81%), Gaps = 6/113 (5%)
Strand=Plus/Plus
Query 149 AACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCC-ACGGCACTTTTGCAA 207
||||| ||||||||||||||||||||||||||||| | ||||| | || ||||||| ||
Sbjct 468 AACACCAAGTTCTGTTACTACAACAACTACAGCCTGACGCAGCCCA-GGTACTTTTGTAA 526
Query 208 GG-CTTGCAAGAGGTACTGGAC-GAGAGGTGGGACTCTCAGGAACGTTCCCGT 258
| || ||| |||||| ||||| | |||||| | ||||||||| | |||||
Sbjct 527 AGACT-GCAGGAGGTATTGGACCGC-AGGTGGTTCCCTCAGGAACATCCCCGT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5