BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473046 Length=789 Score E Sequences producing significant alignments: (Bits) Value AT1G28330.5 | Symbols: DYL1 | dormancy-associated protein-like ... 545 2e-154 > AT1G28330.5 | Symbols: DYL1 | dormancy-associated protein-like 1 | chr1:9933922-9935271 REVERSE LENGTH=865 Length=865 Score = 545 bits (295), Expect = 2e-154 Identities = 361/390 (93%), Gaps = 15/390 (4%) Strand=Plus/Plus Query 1 GTTTCACTGTCTACAAAATCATTGAAGAGC-AACC------aaaaaaaaa-aGATGGTTC 52 |||||||||||||||||||||||||||| | | || ||||||||| ||||||||| Sbjct 3 GTTTCACTGTCTACAAAATCATTGAAGATCTACCCAAAAAAAAAAAAAAAGAGATGGTTC 62 Query 53 TGCTAGAGAAGCTTTGGGATGATGTTGTGGCTGGACCTCAGCCTGACCGTGGCCTTGGCC 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TGCTAGAGAAGCTTTGGGATGATGTTGTGGCTGGACCTCAGCCTGACCGTGGCCTTGGCC 122 Query 113 GCCTCCGTAAGATCACCACCCAACCCATTAATATCAGAGATATAGGAGAAGGGAGCAG-- 170 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 123 GCCTCCGTAAGATCACCACCCAACCCATTAATATCCGAGATATAGGAGAAGGGAGCAGCA 182 Query 171 -TAAGGTG---ATGCATAGGTCGTTGACCATGCCGGCGGCAGTGAGCCCCGGAACTCCGA 226 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 183 GTAAGGTGGTGATGCATAGGTCGTTGACCATGCCGGCGGCAGTGAGCCCTGGAACTCCAA 242 Query 227 CGACCCCGACCACTCCGACCACTCCACGTAAGGATAACGTGTGGAGGAGTGTCTTTAATC 286 |||| || ||||||||||| || |||||||||||||||||||||||||| |||||||||| Sbjct 243 CGACTCCAACCACTCCGACGACGCCACGTAAGGATAACGTGTGGAGGAGCGTCTTTAATC 302 Query 287 CGGGAAGCAACCTCGCCACTAGAGCTATCGGCTCCAACATATTCGATAAACCCACCCATC 346 ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 303 CGGGAAGCAACCTCGCCACTAGAGCCATCGGCTCCAACATCTTTGATAAACCCACCCATC 362 Query 347 CAAATTCTCCATCCGTCTACGACTG-GTTG 375 |||||||||| |||||||||||||| |||| Sbjct 363 CAAATTCTCCCTCCGTCTACGACTGCGTTG 392 Score = 514 bits (278), Expect = 5e-145 Identities = 351/383 (92%), Gaps = 17/383 (4%) Strand=Plus/Plus Query 371 GGTTGTACAGTGGTGAGTCAAGGAGTCAGCACCGTTAGGGATGGTCCGATGGAGTGTGAC 430 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 GGTTGTACAGCGGTGACTCAAGGAGTCAGCACCGTTAGGGATGGTCCGATGGAGTGTGAC 557 Query 431 ATGCGGGTGATGTAAATATGGTGACCAGATCTTCCGCCACCTTACttttttttttttttA 490 |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || Sbjct 558 ATGCGGGTGATGTAAATATGGTGACCTGATCTTCCGCCACCTTACTTTGTTTTTTTTATA 617 Query 491 CTGTGTTTGTGTACTTTATCAGAGTGGATAAAGTGACGAGGGA-TGCTTTTCTTTTGTGC 549 ||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||| | Sbjct 618 TTGTTTTTGTGTACTTTATCAGAGTGGATAAAGTGACG-GGGAATGTTTTTCTTTTGTAC 676 Query 550 ATAAAACTGTCT-CCCACCTGGCACCTATGCAATGTGTATTAgtttctgttttgggctgt 608 | |||||||||| ||||||| | | ||||||||| ||||||||||||||||||||| Sbjct 677 AAAAAACTGTCTTCCCACCT---A---A-GCAATGTGTGTTAGTTTCTGTTTTGGGCTGT 729 Query 609 gttttgcaagttttttctttttgtattttAGAGTTGTGTAGTGTAGTTGCAAGTGGCGGT 668 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 730 GTTTTGCAAGTTTTT-------GTATTTCAGAGTTGTGTAGTGTAGTTGCAAGTGGCGGT 782 Query 669 TGGATCTTTCACTATCTTGTTGGATTTTGATGATGGTTGATGCGTTTGCTTTAATGTTCA 728 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 783 TGGATCTTTCACTATCTTGTTGGATTTTGATGATGGTTGATGCTTTTGCTTTAATGTTAA 842 Query 729 ATAAATAAGCATATTTTTGCTAG 751 ||||||||||||| ||||||||| Sbjct 843 ATAAATAAGCATACTTTTGCTAG 865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38378888308 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5