BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473063
Length=3337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28440.1 | Symbols: HSL1 | HAESA-like 1 | chr1:9996824-10000... 5208 0.0
> AT1G28440.1 | Symbols: HSL1 | HAESA-like 1 | chr1:9996824-10000447
FORWARD LENGTH=3357
Length=3357
Score = 5208 bits (2820), Expect = 0.0
Identities = 3179/3351 (95%), Gaps = 30/3351 (1%)
Strand=Plus/Plus
Query 1 CActctcttcttcatactcactctctctctctttctttcctcAA-CA----CA-A-CCAC 53
||||||||||||||||||| || | ||||||| |||||| |||| || || | ||
Sbjct 14 CACTCTCTTCTTCATACTCTCT-TATCTCTCTCTCTTTCTTCAACCACCGTCATAGATAC 72
Query 54 C--GTCAGAAGAAGAAAGATGTAtcttctctttctcttcttactttttcccaccgtcttc 111
| | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 73 CGGGGAAGACGAAGAAACATGTATCTTCTCTTTCTCTTCTTACTTTTCCCCACCGTCTTC 132
Query 112 tctctcAACCAAGACGGTTTTATTCTTCAACAAGTCAAGCTCTC-TCTAGACGACCCTGA 170
||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||| ||
Sbjct 133 TCTCTTAACCAAGACGGTTTCATTCTTCAACAAGTCAAGCTCTCGT-TAGACGACCCAGA 191
Query 171 CTCATATCTCTCTTCCTGGAACTCCAACGATGATTCTCCTTGTCGGTGGTCCGGCGTTTC 230
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 192 CTCATATCTCTCTTCCTGGAACTCCAACGATGCTTCTCCTTGTCGGTGGTCCGGCGTTTC 251
Query 231 CTGCGCCGGTGATTTCTCCTCCGTCACTTCCGTCGACCTTTCCGGTGCTAATCTCGCCGG 290
||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||
Sbjct 252 CTGCGCCGGTGATTTCTCCTCCGTCACTTCCGTAGACCTCTCCAGCGCTAATCTCGCCGG 311
Query 291 ACCTTTTCCTTCCGTCATTTGTCGTCTCTCTAATCTGGCTCATCTCTCTTTGTACAATAA 350
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACCTTTTCCTTCAGTCATTTGTCGTCTCTCTAATCTGGCTCATCTCTCTTTGTACAATAA 371
Query 351 CTCCATCAACTCTACTCTTCCTCTCAACATCGCTGCTTGTAAAAGTCTTCAAACTCTCGA 410
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 372 CTCCATCAACTCTACTCTTCCTCTCAACATCGCTGCTTGTAAGAGTCTTCAAACTCTCGA 431
Query 411 TCTCTCTCAGAATCTCCTCACCGGTGAGATTCCACAAACTCTTGCCGATATTCCGACTTT 470
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 432 TCTCTCTCAGAATCTACTCACCGGTGAGCTTCCACAAACTCTTGCCGATATTCCGACTTT 491
Query 471 GGTTCACTTAGATTTGACCGGTAACAACTTTTCCGGTGACATCCCGGCGAGTTTCGGAAA 530
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 492 GGTTCACTTAGATTTGACCGGTAACAACTTTTCCGGTGACATTCCGGCGAGTTTCGGCAA 551
Query 531 ATTTGAAAACCTTGAAGTTCTCTCTCTTGTCTACAATCTCTTTGACGGCACGATTCCTCC 590
||| |||||||| || ||||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct 552 ATTCGAAAACCTAGAGGTTCTTTCTCTTGTTTACAATCTCTTAGACGGTACGATTCCTCC 611
Query 591 GTTTCTCGGCAACATCAGCTCCTTGAAGATGCTGAATCTTTCGTATAACCCGTTTAAACC 650
||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||
Sbjct 612 GTTTCTCGGCAACATCAGCACGTTGAAGATGCTGAATCTTTCGTATAACCCCTTTAGTCC 671
Query 651 GAGTCGGATCCCGCCGGAGCTCGGAAACTTGACGAATCTCGAGGTTATGTGGCTCACCGA 710
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 672 GAGTCGGATCCCGCCGGAGTTCGGGAACTTGACGAATCTCGAGGTTATGTGGCTCACTGA 731
Query 711 GTGTCATTTAGTCGGACAGATCCCTGACTCGCTGGGTCAACTCAGTAAACTCGTTGATTT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GTGTCATTTAGTCGGACAGATCCCTGACTCGCTGGGTCAACTCAGTAAACTCGTTGATTT 791
Query 771 GGACCTTGCGCTCAACGACCTTGTAGGTCATATTCCTCCTTCGCTCGGTGGTTTGACTAA 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AGACCTTGCGCTCAACGACCTTGTAGGTCATATTCCTCCTTCGCTCGGTGGTTTGACTAA 851
Query 831 CGTCGTTCAGATTGAGCTATACAACAACTCGTTGACCGGAGAGATTCCACCGGAGCTCGG 890
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CGTCGTTCAGATTGAGCTGTACAACAACTCGTTGACCGGAGAGATTCCACCGGAGCTCGG 911
Query 891 GAATTTGAAATCGTTGAGACTTCTCGACGCGTCGATGAATCAGTTAACCGGAAAAATACC 950
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 912 GAATTTGAAATCGTTGAGACTTCTCGACGCGTCGATGAATCAGTTAACCGGGAAAATACC 971
Query 951 TGACGAGCTTTGCCGTGTGCCGTTGGAGAGTTTGAATCTCTATGAGAACAATCTAGAAGG 1010
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 972 GGACGAGCTTTGCCGTGTGCCGTTGGAGAGTTTGAATCTCTACGAGAACAATCTAGAAGG 1031
Query 1011 TGAACTTCCGGCGAGTATAGCGTTATCTCCGAACCTGTACGAGCTTAGGATCTTCGGAAA 1070
||| |||||||||||||||||||||||||||||| |||||||| |||| || ||||||||
Sbjct 1032 TGAGCTTCCGGCGAGTATAGCGTTATCTCCGAACTTGTACGAGATTAGAATATTCGGAAA 1091
Query 1071 CCGGTTAACCGGCGAATTACCAAAAGACCTCGGTCGAAACTCGCCGTTGAGATGGTTGGA 1130
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1092 CCGGTTAACCGGTGGATTACCAAAAGACCTCGGTCTAAACTCGCCGTTGAGATGGTTGGA 1151
Query 1131 TGTTTCGGAAAACGAATTTGCCGGCGAATTACCGGCGGATCTGTGTGCGAAGGGAGAGCT 1190
||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1152 TGTTTCGGAAAACGAATTTTCCGGCGACTTACCGGCGGATCTGTGTGCGAAAGGAGAGCT 1211
Query 1191 AGAGGAGTTGTTGATTATACACAACTCTTTCTCCGGCGCTATACCGGAGAGTTTCAG-CG 1249
|||||||||||||||||||||||| || |||||||||| ||||||||||||| || | ||
Sbjct 1212 AGAGGAGTTGTTGATTATACACAATTCCTTCTCCGGCGTTATACCGGAGAGTCTC-GCCG 1270
Query 1250 ATTGCAGGAGCTTGACACGTATCCGGTTAGCGTATAACCGGTTTTCCGGTTCAGTCCCTA 1309
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1271 ATTGCAGGAGCTTGACACGTATCCGGTTAGCTTATAACCGGTTTTCCGGTTCAGTTCCTA 1330
Query 1310 CCGGTTTCTGGGGATTGCCTCATGTTAACTTGCTTGAGCTTGTCAACAATTCGTTTTCCG 1369
| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1331 CAGGTTTCTGGGGATTGCCTCATGTTAACTTGCTTGAGCTCGTCAACAACTCGTTCTCCG 1390
Query 1370 GTGAAATTTCAAAGTCCATTGGAGGTGCATCAAATCTCTCGCTGTTGATTCTCTCCAACA 1429
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1391 GTGAAATTTCGAAGTCCATTGGAGGTGCTTCAAATCTCTCGCTGTTGATTCTCTCCAACA 1450
Query 1430 ATGAATTCACCGGATCGTTGCCGGAGGAAATTGGTTCGTTGGACAATCTTAATCAGTTGT 1489
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1451 ATGAATTCACCGGATCTTTGCCGGAGGAAATTGGTTCTTTGGATAATCTTAATCAGTTGT 1510
Query 1490 CGGCAAGTGGAAACAAGTTCAGTGGCTCGTTGCCTGATAGCTTGATGAAG-CTTGGGGAA 1548
|||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1511 CGGCAAGTGGGAACAAGTTCAGTGGCTCGTTGCCTGATAGCTTGATG-AGTCTTGGAGAA 1569
Query 1549 TTAGGTACTCTTGATCTTCATGGTAATCAGTTTTCAGGGGAATTAACTTCTGGAATCAAA 1608
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1570 TTAGGTACTCTTGATCTTCATGGTAATCAGTTTTCAGGAGAGTTAACTTCTGGAATCAAA 1629
Query 1609 TCTTGGAAAAAGCTGAACGAGTTAAACTTAGCCGATAACAAATTTTCGGGTAGAATTCCA 1668
|||||||| ||||| |||||||||||||||||||||||| |||| | |||| |||||||
Sbjct 1630 TCTTGGAAGAAGCTCAACGAGTTAAACTTAGCCGATAACGAATTCACCGGTAAAATTCCA 1689
Query 1669 GATGAAATCGGGAGTTTGTCAGTCTTGAACTATCTTGAT-TTGTCTGGTAACATGTTCTC 1727
||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct 1690 GATGAAATCGGGAGTTTGTCAGTATTGAACTATCTTGATCTT-TCTGGTAACATGTTCTC 1748
Query 1728 TGGCAAAATCCCGGTTTCATTGCAGAGTTTGAAGCTAAACCAGCTGAATCTGTCGTATAA 1787
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1749 TGGCAAGATCCCGGTTTCATTGCAGAGTTTGAAGCTAAACCAGCTGAATCTGTCTTATAA 1808
Query 1788 CCGGTTATCGGGTGACTTACCGCCTTCTTTAGCGAAAGATATGTATAAGAATAGCTTCAT 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CCGGTTATCGGGTGACTTACCGCCTTCTTTAGCGAAAGATATGTATAAGAATAGCTTCAT 1868
Query 1848 TGGGAACCCGGGGTTGTGTGGGGATATCAAGGGATTGTGTGGCTCTGAGAGTGAAGCTAA 1907
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1869 TGGGAACCCGGGATTGTGTGGGGATATCAAGGGATTGTGTGGCTCTGAGAATGAAGCTAA 1928
Query 1908 GAAGAGAGGCTATGTATGGCTTCTTAGGTCGATTTTCGTACTTGCTGCAATGGTGTTTGT 1967
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |
Sbjct 1929 GAAGAGAGGCTATGTATGGCTTCTTAGATCGATTTTCGTACTTGCTGCGATGGTGCTTCT 1988
Query 1968 TGCGGGTGTTGCTTGGTTCTACTTCAAGTACAGGACTTTCAAGAAAGCAAGAGCGATGGA 2027
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1989 TGCGGGTGTTGCTTGGTTCTACTTCAAGTACAGGACTTTCAAGAAAGCAAGAGCCATGGA 2048
Query 2028 AAGATCCAAATGGATTCTAATGTCGTTCCACAAACTCGGGTTCAGTGAGCACGAGATTCT 2087
||||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2049 GAGATCTAAGTGGACTCTAATGTCGTTCCACAAACTCGGGTTCAGTGAGCATGAGATTCT 2108
Query 2088 CGAAAGCTTGGATGAAGACAATGTGATTGGAGCTGGAGCTTCGGGTAAAGTGTACAAAGT 2147
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 2109 TGAAAGCTTGGATGAAGATAATGTGATTGGAGCTGGAGCTTCAGGTAAAGTTTACAAGGT 2168
Query 2148 TGTACTCACCAATGGGGAAACTGTTGCGGTTAAGCGTTTATGGACAGGTTCTGTTAAGGA 2207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 TGTACTCACCAATGGGGAAACTGTTGCGGTTAAGCGTTTATGGACAGGTTCTGTTAAGGA 2228
Query 2208 AACTGGAGATTGTGATCCAGAGAAAGGTTACAAACCTGGAGTCCAGGATGAGGCTTTTGA 2267
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2229 AACTGGAGATTGTGATCCAGAGAAAGGTTACAAACCTGGAGTTCAAGATGAGGCTTTTGA 2288
Query 2268 AGCTGAAGTTGAGACATTGGGTAAGATTAGGCATAAGAACATTGTGAAGCTATGGTGTTG 2327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 AGCTGAAGTTGAGACATTGGGTAAGATTAGGCATAAGAACATTGTGAAGCTATGGTGTTG 2348
Query 2328 CTGTTCTACAAGAGACTGCAAGCTCTTGGTTTACGAGTACATGCCTAATGGTAGCTTGGG 2387
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2349 CTGTTCTACAAGAGACTGCAAGCTCTTGGTTTATGAGTACATGCCTAATGGTAGTTTGGG 2408
Query 2388 AGATTTACTTCATAGCAGTAAAGGAGGAATGTTGGGATGGCAAACGAGGTTTAAGATTAT 2447
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2409 AGATTTGCTTCATAGCAGTAAAGGAGGAATGTTGGGATGGCAAACGAGGTTTAAGATTAT 2468
Query 2448 CTTAGATGCGGCTGAGGGGCTTTCGTATCTTCACCATGATTCTGTTCCTCCGATTGTGCA 2507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2469 CTTAGATGCGGCTGAGGGGCTTTCGTATCTTCACCATGATTCTGTTCCTCCGATTGTGCA 2528
Query 2508 TAGAGATATTAAGTCGAACAATATTTTGATCGATGGAGATTATGGTGCAAGAGTTGCTGA 2567
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2529 TAGAGATATTAAGTCAAACAATATTTTGATCGATGGAGATTATGGTGCAAGAGTTGCTGA 2588
Query 2568 TTTTGGCGTGGCTAAAGCCGTCGACTTGACCGGAAAAGCTCCGAAGTCGATGTCAGTGAT 2627
|||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 2589 TTTTGGTGTGGCTAAAGCTGTCGACTTGACCGGAAAAGCTCCTAAATCGATGTCAGTGAT 2648
Query 2628 TGCTGGTTCATGTGGTTATATCGCACCAGAATACGCATACACGCTTCGTGTGAATGAGAA 2687
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2649 CGCTGGTTCATGCGGTTATATCGCACCAGAATACGCATATACGCTTCGTGTGAACGAGAA 2708
Query 2688 AAGCGACATCTACAGTTTCGGGGTAGTGATCCTCGAGATAGTGACTAGGAAACGCCCGGT 2747
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2709 AAGCGACATCTACAGTTTCGGGGTAGTGATCCTTGAGATAGTAACTAGGAAACGCCCGGT 2768
Query 2748 TGATCCAGAACTTGGGGAAAAAGATTTGGTGAAATGGGTTTGCACTACATTGGACCAAAA 2807
|||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||
Sbjct 2769 TGATCCAGAACTTGGGGAGAAGGATTTGGTGAAGTGGGTTTGCTCTACATTGGACCAAAA 2828
Query 2808 AGGCATAGAGCATGTGATAGACCCGAAACTCGACTCTTGTTTCAAAGATGAGATAAGCAA 2867
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2829 AGGCATAGAGCATGTGATAGACCCGAAACTCGACTCTTGTTTCAAAGAAGAGATAAGCAA 2888
Query 2868 AATCCTCAACGTTGGACTCCTCTGCACGAGTCCGTTGCCCATTAACCGACCTTCCATGAG 2927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2889 AATCCTCAACGTTGGACTCCTCTGCACGAGTCCGTTGCCCATTAACCGACCTTCCATGAG 2948
Query 2928 GCGTGTGGTTAAGATGTTGCAAGAAATTGGCGGTGGAGACGAGGAAAGCCTACACAAGAC 2987
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 2949 GCGTGTGGTTAAGATGTTGCAAGAAATTGGTGGTGGAGACGAAGATAGCCTACACAAGAT 3008
Query 2988 AAGAGACGATAAGGATGGCAAATTAACACCTTATTACAACGAAGAAACCTCAGACCAAGG 3047
|||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 3009 AAGAGATGACAAGGATGGCAAGTTAACACCTTATTACAACGAAGACACCTCAGACCAAGG 3068
Query 3048 AAGTGTAGCTTGAGACACAAATGGAGAAAGAAAAGTGTTTGTGCCCAAAAAAGCTCTCTC 3107
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3069 AAGTATAGCTTGAGACACAAATGGAGAAAGAAAAGTGTTT-TGCCCAAAAAAGCTCTCTC 3127
Query 3108 AATTTTTGGTGCTTGAAGCTGTGAATT-AGGGCATTGAATCAAGATTCTCTCCCTCCCTT 3166
|||||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||
Sbjct 3128 AATTTTTGGTGCTTGAAGCTGTCAATTTAGGGCATTGAATCAAGATTCTCTCAC-CCCTT 3186
Query 3167 TTTTAGGGTTTTGGTCTAAAAGAGAGAATCAGAGATTGTTGAATTATATTTTTATAATAT 3226
||| ||||||||| |||||||| |||||||||||||||| ||| || |||| |||||||
Sbjct 3187 TTT-AGGGTTTTGATCTAAAAGTGAGAATCAGAGATTGTCGAA--AT-TTTT-ATAATAT 3241
Query 3227 ATGaaaaaaaaaGTTTCTAATTCAGTGTTTCAGTTTCTCCACTGTATAAAGCTATATTAG 3286
|| | ||| || ||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 3242 AT-ATAAAGAA-GTTTCTAATTCAGCGTTTCAGTTTCTCCACTGTATAAAGCTAT-T-AG 3297
Query 3287 TAAACTCTGGTTTTGTAAGAGTTTTTATTTTTAGTAAATGCAAATGAAAAA 3337
|||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 3298 TAAACTCTGGTTTTGTAAGAGTTTTTATCTTTGGTAAATGCAAATGAAAAA 3348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166052581330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5