BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473113 Length=692 Score E Sequences producing significant alignments: (Bits) Value AT1G29070.1 | Symbols: | Ribosomal protein L34 | chr1:10149791... 1002 0.0 > AT1G29070.1 | Symbols: | Ribosomal protein L34 | chr1:10149791-10151360 FORWARD LENGTH=772 Length=772 Score = 1002 bits (542), Expect = 0.0 Identities = 629/669 (94%), Gaps = 13/669 (2%) Strand=Plus/Plus Query 1 AAGAAGAGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTTGCTTCGGCTTCGTCGC 60 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 77 AAGAAGTGGGAACTTGAATGGCTTCCTTATCCACTTCCGTTGTAGCTTCGGCTTCGTCGC 136 Query 61 GTTTATGGAATCCTGCTGCTTCCCACGGCATGATTTGCGTTCCTTCTGCTTCGCTTTCTC 120 ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| Sbjct 137 GTTTATGGAATCCTGCTGCCTCCAACGGCAAGATTTGCGTTCCTTCTGCTTCGCTTTCTC 196 Query 121 TGCGTACGGGTTCTAGAC-AATCTCCGTCGTCTTCTCTCCTCACCTCTTCCGCTTCTTCG 179 |||||||||||| ||||| | | ||||| |||| ||||| ||||||||||||||| Sbjct 197 TGCGTACGGGTTGTAGACGGA-GT---TCGTC--CTCT-CTCACTTCTTCCGCTTCTTCG 249 Query 180 CAATTGCTTCATTGCTCGTTTCTCTCCTCACCTCTTTCCCTAGCGTCTCCGTTTTCTGGT 239 |||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||| Sbjct 250 CAATTGCTTCATTGCTCGTTTCTCTCGTCGCCTGTTTCCCTAGCGTCTCCATTTTCTGGT 309 Query 240 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAACAGCCAGAGACGCAGA 299 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 310 TTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAATGGCCAGAGACGCAGA 369 Query 300 GGCCTTGTGGTGAGAGCTGGAAAAGCTGCTCTGTGTCAAACAAAGAGAAGCAGATCAAGA 359 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 370 GGCCTTGTGGTTAGAGCTGGAAAAGCTGCTCTGTGTCAAACTAAGAGAAGCAGATCAAGA 429 Query 360 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGTGGTAGAGCA 419 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 430 AAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGCGGTAGAGCA 489 Query 420 ACCATAAAGCGCCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 479 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 490 ACCATAAAGCGTCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGC 549 Query 480 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCAGTCTATCTGTAATCTTGTTTGATA 539 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 550 AGCGGCAAACGGGCTTGAAGTTTGTTTCTCTCTTCACTCTATCTGTAATCTTGTTTCATG 609 Query 540 TGCTTATTTTTATTCCGCCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 599 ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 TGCTT-TTTTT---CCACCAGAAGATACAATGAGAAACATGGTTCGTTGAGCTCTTTTCT 665 Query 600 GTGTTT-AACTCTTTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATCCATCA 658 | |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 666 GCGTTTTAACTCTCTTGCATCCTTGATTCGTTTATAAATCAATGTTCTTGGAATTCATCA 725 Query 659 CAAGTACTA 667 || |||||| Sbjct 726 CATGTACTA 734 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33506176049 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5