BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473144
Length=2417
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29340.1 | Symbols: PUB17, ATPUB17 | plant U-box 17 | chr1:1... 3548 0.0
> AT1G29340.1 | Symbols: PUB17, ATPUB17 | plant U-box 17 | chr1:10264395-10266818
FORWARD LENGTH=2424
Length=2424
Score = 3548 bits (1921), Expect = 0.0
Identities = 2276/2442 (93%), Gaps = 45/2442 (2%)
Strand=Plus/Plus
Query 1 GAGAAAACCCCTTCCATGGCCTCAGCGGCGATATTCTCATCGTTACGACGGAGGAGATCG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAGAAAACCCTTTCCATGGCCTCAGCGGCGATATTCTCATCGTTACGACGGAGGAGATCG 62
Query 61 CCGTCTCTGGAAGCATTTC-TAGCCCCCGTTGACCTTTCCGGCGTCGCACTTGTTCAAAC 119
|||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CCGTCTTTGGAAGCA-TTCTTAGCCCCCGTTGACCTTTCCGGCGTCGCACTTGTTCAAAC 121
Query 120 CCTAGCTTCAATCTCAACGGAGGTTGTTTCTTGTTTCACCTCTGTACGATTCTCGTTTCA 179
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 122 CCTAGCTTCAATCTCTTCGGAGGTTGTTTCTTGTTTCACCTCTGTTCGATTCTCGTTTCA 181
Query 180 ACGCAAGAACGCTCGTTCTTTGATTCGTAAGATCGAGATCTTTGTCGTATTGTTCGAATT 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 182 ACGCAAGAACGCTCGTTCTTTGATTCGTAAGATCGAGATCTTTGTCGTATTATTCGAATT 241
Query 240 TCTCGTAGATTCAAATTGGGGCT---------C---ATC-A-AG-AAGTAGAAGAAG--- 281
||||||||||||||||||||||| | | | | || ||| ||||||||
Sbjct 242 TCTCGTAGATTCAAATTGGGGCTCAACAACAACAAGAACAAGAGCAAGAAGAAGAAGCAA 301
Query 282 AAGCTCTGTTTCTGAATCAACAGCTTTGCTTTGTCTCAAGGAGCTTTATCTTCTTCTCTA 341
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 302 AAGCTCTGTTTCTGAATCAACAGCTTTGCTTTGTCTCAAAGAGCTTTATCTTCTTCTCTA 361
Query 342 TCGCTCCAAGATCCTTGTTGATTACTGCGCTCAATCTAGTAAGTTATGGCTCTTGTTACA 401
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCGTTCCAAGATCCTTGTTGATTACTGCGCTCAATCTAGTAAGTTATGGCTCTTGTTACA 421
Query 402 AAACCCTTCGATTTCTGGGTATTTCCATGATTTGAATCAAGAAATTTCGACTCTTTTGGA 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AAACCCTTCGATTTCTGGGTATTTCCATGATTTGAATCAAGAAATTTCGACTCTTTTGGA 481
Query 462 TGTTTTACCTGTCAACGATCTTGGTTTAAGCGATGACATTAGAGAGCAAATCGAGTTATT 521
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 482 TGTTTTACCTGTCAATGATCTTGGTCTAAGCGATGACATTAGAGAGCAAATCGAGTTGTT 541
Query 522 GCAGAGACAATCAAGAAAATCAAGATTGTATATTGATAAGAACGATGAGTCGTTACGTGA 581
||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| ||||||||
Sbjct 542 GCAGAGACAGTCAAGGAAAGCGAGATTGTATATCGATAAGAACGATGAGTCATTACGTGA 601
Query 582 ATCATTCTATTCGTTTCTTGATGGGTTTGAGAACGGTGAGATTCCGAATTCGGTTGATCT 641
||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||
Sbjct 602 ATCATTCTATTCGTTTCTTGATGGGTTTGAGAACGGTAAGATTCCGAGTTCTGTTGATCT 661
Query 642 GAGATTGTTCTTTGTTGAGAGATTGGGGATAAGGGATTCGAAGAGTTGTCGAACCGAAAT 701
|||| ||||||||||||||| ||||||||| || ||||||||||||||||| | ||| ||
Sbjct 662 GAGAATGTTCTTTGTTGAGAAATTGGGGATTAGAGATTCGAAGAGTTGTCGTAGCGAGAT 721
Query 702 CGAGTTTTTGGAAGAACAGATTGTGAATCATGATGGTGATTTGGAGCCTACGGGATCGGT 761
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 722 CGAGTTTTTGGAAGAACAGATTGTGAATCATGATGGTGATTTGGAGCCAACGGGATCGGT 781
Query 762 TATTAATGGTTTTGTGGCGATTACAAGGTATTGTAGGTTTTTGTTGTTTGGATTTGAAGA 821
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 782 TATTAATGGTTTTGTGGCGATTACAAGATACTGTAGGTTCTTGTTGTTTGGATTTGAAGA 841
Query 822 AGATGGATTGGAGTGGAGGATTGAGAAT---CCGAAGAAACCTCGAAAAGGGTTCGTTGC 878
||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 842 AGATGGAATGGAGTGGTGGATTGAGAATAATCCGAAGAAGCCTCGAAAAGGGTTCGTTGC 901
Query 879 ACAGGAGATTGGGGATACGTTTATAACTGTTCCAAAGGATTTTGTTTGTCCAATCTCTCT 938
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 ACAGGAGATTGGAGACACGTTTATAACTGTGCCAAAGGATTTTGTTTGTCCAATCTCTCT 961
Query 939 TGATTTGATGACAGATCCTGTGATTATTTCCACTGGGCAAACTTATGATCGGAGCTCTAT 998
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 962 TGATTTGATGACAGATCCTGTGATTATTTCCACTGGGCAGACTTATGATCGGAACTCTAT 1021
Query 999 AGCTAGGTGGATTGAAGAAGGGCATTGTACTTGTCCGAAAACCGGGCAAATGCTTATGGA 1058
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1022 AGCTAGGTGGATTGAAGAAGGGCATTGTACTTGTCCGAAAACAGGACAAATGCTAATGGA 1081
Query 1059 TTCGAGGATTGTTCCTAATCGAGCTTTGAAGAATTTGATTGTGCAATGGTGTACTGCTAG 1118
||||||||||||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct 1082 TTCGAGGATTGTTCCTAATAGGGCGTTGAAGAATTTGATTGTGCAATGGTGTACTGCGAG 1141
Query 1119 TGGTATATCTTATGAGTCGGAGTTTACGGATTCTTCGAATGAGTCTTTTGCTTCGGCTCT 1178
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1142 TGGTATATCTTATGAGTCAGAGTTTACGGATTCTCCGAATGAGTCTTTTGCTTCTGCTCT 1201
Query 1179 TCCGACGAAAGCTGCCGTTGAAGCGAACAAAGCGACGGTATCGATCCTTATTAAGTATCT 1238
||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1202 TCCCACGAAAGCTGCGGTTGAAGCGAACAAAGCGACGGTGTCGATACTTATTAAGTATCT 1261
Query 1239 AGCAGATGGTTCTGAAGCTGCTCAGACTGTTGCTGCACGGGAGATTCGTCTTTTAGCGAA 1298
||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1262 AGCTGATGGTTCTCAAGCAGCTCAGACTGTTGCAGCACGGGAGATTCGTCTTTTAGCTAA 1321
Query 1299 AACCGGGAAAGAAAACAGAGCATACATTGCTGAAGCAGGCGCGATACCGCACTTGTGCCG 1358
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1322 GACTGGAAAAGAAAACAGAGCATATATTGCTGAAGCAGGCGCGATACCGCACTTGTGCCG 1381
Query 1359 CCTTCTCAAATCCGAAAACGCTATTGCGCAAGAGAATTCAGTGACCGCGATGTTGAATCT 1418
|||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1382 CCTTCTTACATCCGAAAATGCTATTGCGCAAGAGAATTCAGTGACCGCGATGCTGAATCT 1441
Query 1419 TTCGATATATGAGAAGAACAAGAGTCGGATTATGGAAGAAGGTGATTGTTTGGAGTCTAT 1478
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1442 CTCGATATATGAGAAGAACAAGAGTCGGATCATGGAAGAAGGTGATTGTTTGGAGTCTAT 1501
Query 1479 AGTAAGTGTTCTTGTTTCTGGTCTCACAGTGGAAGCGCAAGAAAACGCAGCAGCTACATT 1538
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1502 AGTAAGTGTTCTTGTTTCTGGTCTCACAGTGGAAGCGCAAGAAAATGCAGCGGCTACATT 1561
Query 1539 GTTTAGTCTCTCTGCTGTACACGTGTACAAGAAACGGATAGC-AGTTGTTGATCAGTGCG 1597
||| ||||||||||| ||||||| ||| |||||||||||||| | |||| ||||||||||
Sbjct 1562 GTTCAGTCTCTCTGCAGTACACGAGTATAAGAAACGGATAGCGA-TTGTGGATCAGTGCG 1620
Query 1598 TTGAGGCATTAGCGTTGCTGCTTCAAAACGGGACACCGAGAGGGAAGAAAGATGCGGTTA 1657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1621 TTGAGGCATTAGCGTTGCTGCTTCAAAACGGGACGCCGAGAGGGAAGAAAGATGCGGTTA 1680
Query 1658 CAGCGTTATATAACTTATCGACACATCCAGATAACTGCAGTAGGATGATTGAAGGAGGAG 1717
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CTGCGTTGTATAACTTATCGACACATCCAGATAACTGCAGTAGGATGATTGAAGGAGGAG 1740
Query 1718 GAGTGTCAAGTCTTGTTGGCGCTCTCAAGAACGAAGGTGTAGCAGAGGAAGCTGCAGGAG 1777
| ||||| ||||||||||| ||| | |||||||||||||||||||||||||| |||||||
Sbjct 1741 GTGTGTCTAGTCTTGTTGGAGCTTTAAAGAACGAAGGTGTAGCAGAGGAAGCAGCAGGAG 1800
Query 1778 CTTTGGCTTTGTTAGTTAGACAATCACTTGGTGCTGAGGCTATAGGGAAAGAGGACTCTG 1837
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 1801 CTTTGGCTTTGTTAGTTAGACAATCTCTTGGCGCTGAGGCTATAGGGAAAGAAGACTCCG 1860
Query 1838 CTGTGGCAGGACTCATGGGAATGATGAGATGCGGAACGCCAAGAGGGAAAGAGAACGCGG 1897
||||||| || || ||||||||||||||||| ||||| || |||||||||||||| || |
Sbjct 1861 CTGTGGCGGGGCTTATGGGAATGATGAGATGTGGAACACCGAGAGGGAAAGAGAATGCTG 1920
Query 1898 TCGCTGCATTGCTCGAACTCTGTAGGAGCGGTGGAGCCGCTGTGGCAGAGAAAGTGTTGA 1957
| ||||| |||||||| || |||||||| |||||||| |||||||| |||||||||||||
Sbjct 1921 TTGCTGCGTTGCTCGAGCTTTGTAGGAGTGGTGGAGCTGCTGTGGCGGAGAAAGTGTTGA 1980
Query 1958 GAGCACCTGCGATTACGGGATTGCTTCAAACGCTTTTGTTTACGGGGACAAAGCGGGCTA 2017
|||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1981 GAGCACCTGCGATTGCGGGGTTGCTACAGACGCTTTTGTTTACGGGGACAAAGCGGGCTA 2040
Query 2018 GACGGAAAGCGGCTTCGCTTGCTCGGGTTTTCCAGAGGCGGGAGAATGCAGCGATGCGGT 2077
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2041 GACGGAAAGCGGCTTCGCTTGCTCGGGTTTTTCAGAGGCGGGAAAATGCAGCGATGCGGT 2100
Query 2078 CTGGCGTTTACGGGTTTGTAGGGAATTCAAACGGCAATAGAGACGGCAGTTTTACAACGG 2137
|||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||
Sbjct 2101 CTGGCGTTTACGGGTTTGTAGGGAATACAAATGGGAATAGAGACGGTGGTTTTACAACGG 2160
Query 2138 ATGTCTCAGTTCCGATATCAATCTCAATCTCCGTACCTGTGTTGTGATCTATGTTTAGTC 2197
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2161 ATGTCTCAGTTCCGATATCAATCTCAATCTCCGTACCAGTGTTGTGATCTATGTTTAGTC 2220
Query 2198 TTAAAA-AACTCTAAAAGAGGTACttttttgttgttggtggtgtttgtttcattgttttg 2256
| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2221 T-AAAAGAACTCTAAAAGTGGTACTTTTTTGTTGTTGGTGGTGTTTGTTTCATTGTTT-G 2278
Query 2257 tCTATATTATATACATTTATTGGTTGGGAGGTATAATACAAGTAATATTTTAGAGAGGAT 2316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2279 TCTATATTATATACATTTATTGGTTGGGAGGTATAATACAAGTAATATTTTAGAGAAGAT 2338
Query 2317 ATGTGTATATGTTAATACTATGTATCTTCCAGGGGAAAAAGAGAGCAAAAATGAGTTTAG 2376
|||||| || | || | ||||||||||||| | || | |||||| |||||| |
Sbjct 2339 ATGTGT----GT-A-TA-T--GTATCTTCCAGGG-A----GA-A-CAAAAAAGAGTTTTG 2382
Query 2377 -TGTATGATGATCTTTATGTGTATTGTATTTGATGTATAAGC 2417
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2383 GTGTATGATGATCTTTATGTGTATTGTATTTGATGTATAAGC 2424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120029503095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5