BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473156
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29450.1 | Symbols: | SAUR-like auxin-responsive protein fa... 678 0.0
AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein fa... 459 2e-128
AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein fa... 427 4e-119
AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive prot... 390 6e-108
AT1G29440.1 | Symbols: | SAUR-like auxin-responsive protein fa... 372 2e-102
AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein fa... 353 7e-97
AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein fa... 289 2e-77
> AT1G29450.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10305951-10306499 REVERSE LENGTH=549
Length=549
Score = 678 bits (367), Expect = 0.0
Identities = 435/467 (93%), Gaps = 8/467 (2%)
Strand=Plus/Plus
Query 1 CTTCATCAATCATAACTTGCATTCAAAGAGTTCTACAACACAAG-TAACAATCTCTTTGT 59
||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| || |
Sbjct 1 CTTCACCAATCATAACTTGCATTCAAAGAGTTCTACAACACAAGTTAA-AATCTCCTTCT 59
Query 60 GCTTTCGGATCTACAAAATATTTTCTTGAAAAGAATGATGAACACCAAAAAGCTAATCAA 119
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 60 GCTTTCGGATCTACAAAATATTTTCCTGAAAAGAATGATGAACACAAAAAAGCTAATCAA 119
Query 120 GATGGCCAAGAAATGGCAACAAAGAGCAGCCCTCCACAGGAAAAGGATCTCATTTCAAAG 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GATGGCCAAGAAGTGGCAACAAAGAGCAGCCCTCCACAGGAAAAGGATCTCATTTCAAAG 179
Query 180 ATCAAGTACTGCTACCAGCTCAACCGCTGCAGAGAAGGGTTGCTTTGTGGTTTACACGAC 239
|||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ATCAAGTAGTGCTACTAGCTCAACCGCTGCAGAGAAGGGTTGTTTTGTGGTTTACACGAC 239
Query 240 AGATAGCGCACGCTTTGCTTTTCCTCTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCT 299
||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 240 AGACAGCACACGCTTTGCTTTTCCGCTAAGTTACCTGAGTAACTCTGTTTTCCAAGAACT 299
Query 300 CTTGAAGATCTCTGAAGAAGAGTTTGGCCTCTCCA-C-GGAAGGACCAATAACATTGCCA 357
||||||||||||||||||||||||||||||| ||| | || ||||| || |||| ||||
Sbjct 300 CTTGAAGATCTCTGAAGAAGAGTTTGGCCTC-CCAACTGGT-GGACCTATCACATCGCCA 357
Query 358 TTCGATTC-GATTTTCATGGAGTATCTTATCAAATTGATCGAAAGACGAATGGATGGAGA 416
|||||||| | ||||| |||||||||| ||||||||| || ||||||||||||||| |||
Sbjct 358 TTCGATTCAG-TTTTCTTGGAGTATCTCATCAAATTGGTCCAAAGACGAATGGATGCAGA 416
Query 417 CACAGAAAAGGCTTTATTAATGTCAATCTCTAGTGCTAGATGTTCTT 463
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CACAGAAAAGGCTTTGTTAATGTCAATCTCTAGTGCTAGATGTTCTT 463
> AT1G29500.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10321210-10321864 FORWARD LENGTH=655
Length=655
Score = 459 bits (248), Expect = 2e-128
Identities = 366/421 (87%), Gaps = 16/421 (4%)
Strand=Plus/Plus
Query 93 AATGATGAACACCAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCC 151
||||||||||| |||| ||||||||||||||| || |||||||||||| |||||||| |
Sbjct 80 AATGATGAACA-CAAAGAAGCTAATCAAGATGTTCAGGAAATGGCAACAGAGAGCAGCTC 138
Query 152 TCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTACTGCTACCAGCTCAACCGCTGCAG 211
||||||||||||| |||||||| |||||| |||||| | || |||||||| ||| ||
Sbjct 139 TCCACAGGAAAAGAATCTCATTCCAAAGACCAAGTA---C--CC-GCTCAACCACTGTAG 192
Query 212 AGAAGGGTTGCTTTGTGGTTTACACGACAGATAGCGCACGCTTTGCTTTTCCTCTAAGTT 271
||||||| |||||||| ||||||||| | || | | |||||||||||||||| |||| |
Sbjct 193 AGAAGGGATGCTTTGTCGTTTACACGGCGGACAACACACGCTTTGCTTTTCCGATAAGCT 252
Query 272 ACCTGAGCAACTCTGT-TTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTTTGGCCTC 330
|||| ||||||||||| ||| |||||| | ||| |||| |||||||||||||||||||||
Sbjct 253 ACCTAAGCAACTCTGTATTT-CAAGAGATTTTGGAGATATCTGAAGAAGAGTTTGGCCTC 311
Query 331 TCC-A-CGGAAGGACCAATAACATTGCCATTCGATTCGATTTTCATGGAGTATCTTATCA 388
|| | ||| |||||||| ||||| |||||||||||| |||| |||||||||| ||||
Sbjct 312 -CCAACCGG-TGGACCAATCACATTACCATTCGATTCGGTTTTTTTGGAGTATCTCATCA 369
Query 389 AATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCTTTATTAATGTCAATCTCTA 448
|||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 370 AATTGATCAAAAGACGAATGGATGGAGATACAGAAAAGGCTTTGTTAATGTCAATCTCTA 429
Query 449 GTGCTAGATGTTCTTTACAACAACCAGAACATAGTACTCAACAGAT-GCTTGTATTTTAG 507
|||||||||||||||| ||| ||| |||||| ||||||||||| || |||||||||||||
Sbjct 430 GTGCTAGATGTTCTTTGCAAAAACAAGAACAGAGTACTCAACA-ATTGCTTGTATTTTAG 488
Query 508 A 508
|
Sbjct 489 A 489
> AT1G29420.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10301152-10301951 REVERSE LENGTH=800
Length=800
Score = 427 bits (231), Expect = 4e-119
Identities = 334/382 (87%), Gaps = 13/382 (3%)
Strand=Plus/Plus
Query 93 AATGATGAACACCAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGCCC 151
||||||||||| |||| ||||| | ||||||||||||||||||||||| ||||| | ||
Sbjct 43 AATGATGAACA-CAAAGAAGCTCTTGAAGATGGCCAAGAAATGGCAACAGAGAGCTG-CC 100
Query 152 TCCA-CAGGAAAAGGATCTCATTTCAAAGATCAA--G-TACTGCTACCAGCTCAACCGCT 207
| | |||||||| ||||| ||||| ||||||| | |||| ||| |||||||||||||
Sbjct 101 TTAAGAAGGAAAAGAATCTCTTTTCATAGATCAACTGATACTACTAGCAGCTCAACCGCT 160
Query 208 GCAGAGAAGGGTTGCTTTGTGGTTTACACGA-CAGATAG-CGCACGCTTTGCTTTTCCTC 265
||||||||||| || |||||||||||||| | | ||||| | ||||||||||||||
Sbjct 161 GCAGAGAAGGGCTGTTTTGTGGTTTACAC-ATCCGATAGAATC-CGCTTTGCTTTTCCAA 218
Query 266 TAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTTTG 325
||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 219 TAAGTTATCTGAGCAACTCTGTTATCCAAGAGCTCTTGAAGATATCCGAAGAAGAGTTTG 278
Query 326 GCCTCTCCACGGAAGGACCAATAACATTGCCATTCGATTCGATTTTCATGGAGTATCTTA 385
|| || |||||||||||||||| |||||||||||||||||| ||||| |||||||||| |
Sbjct 279 GCATCCCCACGGAAGGACCAATCACATTGCCATTCGATTCGGTTTTCTTGGAGTATCTCA 338
Query 386 TCAAATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCT-TTATTAATGTCAATC 444
||| |||| || |||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 339 TCAGATTGGTCCAAAGACGAATGGATGGAGACACAGAAAAGGCTCTTAT-AACGTCAATC 397
Query 445 TCTAGTGCTAGATGTTCTTTAC 466
|||||| |||||||||||||||
Sbjct 398 TCTAGTACTAGATGTTCTTTAC 419
> AT1G29510.1 | Symbols: SAUR68 | SAUR-like auxin-responsive protein
family | chr1:10322574-10323189 FORWARD LENGTH=616
Length=616
Score = 390 bits (211), Expect = 6e-108
Identities = 331/387 (86%), Gaps = 16/387 (4%)
Strand=Plus/Plus
Query 93 AATGATGA-ACAC-CAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGC 149
|||||||| | || |||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 109 AATGATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAAAGAGCAGC 168
Query 150 CCTCCACAGGAAAAGGATCTCATTTCAAAGATCAA--GTACTG--CTACCAGCTCAACCG 205
||||||||||||||| ||||||||||| ||||||| || || ||| |||||| |
Sbjct 169 CCTCCACAGGAAAAGAATCTCATTTCAGAGATCAAATGT-CTTTACTAGCAGCTCTTCTA 227
Query 206 CTGCAGAGAAGGGTTGCTTT-GTGGTTTACACGACAGATAGCG-CACGCTTTGCTTTTCC 263
||| ||| |||||||| ||| ||||| |||||| | |||| | ||||||||||||||
Sbjct 228 CTGTAGAAAAGGGTTG-TTTCGTGGTCTACACGGCGGATAAAATC-CGCTTTGCTTTTCC 285
Query 264 TCTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTT 323
||||||| |||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct 286 AATAAGTTATCTGAGCAACTCTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTT 345
Query 324 TGGCCTCTCCA-CGGAAGGACCAATAACATTGCCATTCGATTCGATTTTCATGGAGTATC 382
|| ||| ||| ||||||||||||| |||||||| ||||||||| ||||| |||||||||
Sbjct 346 CGGTCTC-CCAACGGAAGGACCAATCACATTGCCGTTCGATTCGGTTTTCTTGGAGTATC 404
Query 383 TTATCAAATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCTTTATTAATGTCAA 442
| |||||| ||||| ||||||||||||||||||| |||||||||||| | || |||||||
Sbjct 405 TCATCAAACTGATCCAAAGACGAATGGATGGAGATACAGAAAAGGCTCTGTTGATGTCAA 464
Query 443 TCTCTAGTGCTA-GATGTTCTTTACAA 468
|||||||||||| | ||||||||||||
Sbjct 465 TCTCTAGTGCTAAG-TGTTCTTTACAA 490
> AT1G29440.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10304507-10305108 REVERSE LENGTH=602
Length=602
Score = 372 bits (201), Expect = 2e-102
Identities = 363/437 (83%), Gaps = 27/437 (6%)
Strand=Plus/Plus
Query 93 AATGATGA-ACAC-CAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGC 149
|||||||| | || |||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 109 AATGATGATAAACGCAAAGAAGCTTATGAAGATGGCTAAGAAATGGCAACAAAGAGCAGC 168
Query 150 CCTCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTA-CTG--CTACCAGCTCAACCGC 206
||||||||||||||| ||||||||||| ||||||||| || ||| |||||| | |
Sbjct 169 CCTCCACAGGAAAAGAATCTCATTTCAGAGATCAAGTGTCTTTACTAGCAGCTCTTCTAC 228
Query 207 TGCAGAGAAGGGTTGCTTT-GTGGTTTACACGACAGATAGCG-CACGCTTTGCTTTTCCT 264
|| ||| |||||||| ||| |||||||||||| | |||| | ||||||||||||||
Sbjct 229 TGTAGAAAAGGGTTG-TTTCGTGGTTTACACGGCGGATAAAATC-CGCTTTGCTTTTCCA 286
Query 265 CTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTTT 324
||||||| ||||||||||||||| |||| ||||| ||||| || ||||||||||| |||
Sbjct 287 ATAAGTTATCTGAGCAACTCTGTTGTCCAGGAGCTATTGAAAATATCTGAAGAAGA-TTT 345
Query 325 -GGCCTCTCCA-CGGAAGGACCAATAACATTGCCATTCGATTCGA--TTTTCATGGAGTA 380
|| ||| ||| ||||||||||||| ||||| |||||||||||| |||| | | ||||
Sbjct 346 CGGTCTC-CCAACGGAAGGACCAATCACATTACCATTCGATTCGGCCTTTTTA-G-AGTA 402
Query 381 TCTTATCAAATTGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCTTTATTAATGTC 440
||| ||||| ||||| ||||||||||||||| ||| |||||||||||||| ||| ||||
Sbjct 403 TCTCGTCAAACTGATCCAAAGACGAATGGATGAAGATACAGAAAAGGCTTTGTTATTGTC 462
Query 441 AATCTCTAGTGCTAGATGTTCTTTACAACAACCAGAACA----T--AGTACT-C--AACA 491
|||||| ||||||||||| ||||| |||| || |||||| | |||||| | ||||
Sbjct 463 AATCTCAAGTGCTAGATGCTCTTTTCAACCACAAGAACAACAATGTAGTACTACGCAACA 522
Query 492 GATGCTTGTATTTTAGA 508
| |||||||||||||||
Sbjct 523 GTTGCTTGTATTTTAGA 539
> AT1G29430.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10302650-10303335 REVERSE LENGTH=686
Length=686
Score = 353 bits (191), Expect = 7e-97
Identities = 358/435 (82%), Gaps = 26/435 (6%)
Strand=Plus/Plus
Query 93 AATGATGA-ACAC-CAAA-AAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCAGC 149
|||||||| | || |||| ||||| || ||| ||||||||||||||||||||||||||||
Sbjct 109 AATGATGATAAACGCAAAGAAGCTCATGAAGTTGGCCAAGAAATGGCAACAAAGAGCAGC 168
Query 150 CCTCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTACTGCTACCAGCT-C-AACC-GC 206
|||| | || ||||| || |||||||| |||||||||| | |||| ||| | || | ||
Sbjct 169 CCTCAAGAGAAAAAGAATTTCATTTCAGAGATCAAGTATTACTACTAGCAGCCAAACAGC 228
Query 207 TGCAGAGAAGGGTTGCTTT-GTGGTTTACACGACAGATA-GCGCACGCTTTGCTTTTCCT 264
|| ||| |||||||| ||| |||||||||||| | |||| | | || ||| | |||||
Sbjct 229 TGTAGAAAAGGGTTG-TTTCGTGGTTTACACGGCTGATAAGATC-CGTTTTTCATTTCC- 285
Query 265 CT-AAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTCTTGAAGATCTCTGAAGAAGAGTT 323
|| ||||||||| |||||| || || |||||||||||||||| || ||||||||||||||
Sbjct 286 CTTAAGTTACCTAAGCAACACTATTGTCCAAGAGCTCTTGAAAATATCTGAAGAAGAGTT 345
Query 324 TGGCCTCTCC-ACGGAAGGACCAATAACATTGCCATTCGATTCGA--TTTTCATGGAGTA 380
|| ||| || |||||||||||||| |||||||||||||||||| |||| | | ||||
Sbjct 346 CGGTCTC-CCGACGGAAGGACCAATCACATTGCCATTCGATTCGGCCTTTTTA-G-AGTA 402
Query 381 TCTTATCAAAT-TGATCGAAAGACGAATGGATGGAGACACAGAAAAGGCTTTATTAATGT 439
||| ||||| | ||||| ||||||||||||||| ||| |||||||||||| | ||| |||
Sbjct 403 TCTCATCAA-TCTGATCCAAAGACGAATGGATGAAGATACAGAAAAGGCTCTGTTATTGT 461
Query 440 CAATCTCTAGTGCTAGATGTTCTTTACAACAACCAGAACAT---AGT---ACTCAACAGA 493
||||||| ||||||||| | ||||| |||| || | ||||| ||| |||||||||
Sbjct 462 CAATCTCAAGTGCTAGAAGCTCTTTTCAACCACAACAACATTGTAGTGCTACTCAACAGT 521
Query 494 TGCTTGTATTTTAGA 508
||||||| |||||||
Sbjct 522 TGCTTGTGTTTTAGA 536
> AT1G29460.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:10307507-10308143 REVERSE LENGTH=637
Length=637
Score = 289 bits (156), Expect = 2e-77
Identities = 338/420 (80%), Gaps = 35/420 (8%)
Strand=Plus/Plus
Query 89 AAAGAATGATGAACACCAA-AAAGCTAATCAAGATGGCCAAGAAATGGCAACAAAGAGCA 147
|||| ||||| ||||| || ||| ||| |||||||||||||||||||||||||||||||
Sbjct 85 AAAG-ATGATCAACACTAAGAAA-CTACTCAAGATGGCCAAGAAATGGCAACAAAGAGCT 142
Query 148 GCCCTCCACAGGAAAAGGATCTCATTTCAAAGATCAAGTACTGCTAC--C-AG--CT-C- 200
|||||| | |||||||| |||||||| |||||||||| |||| |||| | | || |
Sbjct 143 GCCCTCAAGAGGAAAAGAATCTCATTCCAAAGATCAACTACTACTACTACTACTACTACT 202
Query 201 A--AC--C--GCTGC--A---G------AGAAGGGTTGCTTT-GTGGTTTACACGACAGA 242
| || | || || | | ||||||| || ||| |||||||||||| ||
Sbjct 203 ACTACTACTAGCAGCTCAACTGCTGTGGAGAAGGGCTG-TTTCGTGGTTTACACGGTTGA 261
Query 243 TAGCG-CACGCTTTGCTTTTCC-TCTAAGTTACCTGAGCAACTCTGTTTTCCAAGAGCTC 300
|| | |||||||||||||| | |||||||| ||| ||||||||||||| ||||||||
Sbjct 262 TAAAATC-CGCTTTGCTTTTCCGT-TAAGTTACTTGAACAACTCTGTTTTCGAAGAGCTC 319
Query 301 TTGAAGATCTCTGAAGAAGAGTTTGGCCTCTCCACGGAAGGACCAATAACATTGCCATTC 360
|||||||| |||||||||||||| |||||| ||| |||||||| || ||||| |||
Sbjct 320 TTGAAGATATCTGAAGAAGAGTTCGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTC 379
Query 361 GATTCGATTTTCATGGAGTATCTTATCAAATTGATCGAAAGACGAATGGATGGAGACACA 420
|| ||| ||||| |||||||||| |||||||| |||||| || ||||||||||||| |||
Sbjct 380 GACTCGGTTTTCTTGGAGTATCTCATCAAATTTATCGAACGAAGAATGGATGGAGATACA 439
Query 421 GAAAAGGCT-TTATTAATGTCAATCTCTAGTGCTAGATGTTCTTTACAACAACCAGAACA 479
||||| ||| || |||||||||||||||||||||||||| ||| | |||| || ||||||
Sbjct 440 GAAAAAGCTCTT-TTAATGTCAATCTCTAGTGCTAGATGCTCTATGCAACCACAAGAACA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5