BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473189
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29820.1 | Symbols: | Magnesium transporter CorA-like famil... 2700 0.0
AT1G29830.3 | Symbols: | Magnesium transporter CorA-like famil... 2104 0.0
> AT1G29820.1 | Symbols: | Magnesium transporter CorA-like family
protein | chr1:10437657-10440786 FORWARD LENGTH=1877
Length=1877
Score = 2700 bits (1462), Expect = 0.0
Identities = 1621/1699 (95%), Gaps = 5/1699 (0%)
Strand=Plus/Plus
Query 77 GAGTTGAAGTTATCTGTCTTGAGAAGCTGGTAGA-TTTTCTATTGATTAACCATGGGTGA 135
||||| || ||||||||||||||||||||||||| |||||||||||| ||| ||||||||
Sbjct 42 GAGTTTAAATTATCTGTCTTGAGAAGCTGGTAGATTTTTCTATTGATGAACAATGGGTGA 101
Query 136 AAACGGGGAGAATCATTCAGTCTCTCAAGAGAGTAAATCCAAGAAGCTTGATAGTAAAAA 195
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 102 GAACGGGGAGAATCATTCAGTCTCTCAAGAGAGTAAATCCAAGAAGCTTGAGAGTAAAAA 161
Query 196 TCATTCAGGTGTTCCCAAGAGTGATCTTTGGACTGATGGGATTATTTGTGCCTTTGAGTT 255
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 162 TCATTCAGGTGTTCCCAAGAGCGATCTTTGGACTGATGGGATTATTTGTGCCTTTGAGTT 221
Query 256 TATTCGAGGTCCGAAAAAACATGTTGATTCAAAACAACTGGATAAAGGTTAC-TTGAAGC 314
||||||||||||||||||||||||||||||||||||||| || ||||| | | |||||||
Sbjct 222 TATTCGAGGTCCGAAAAAACATGTTGATTCAAAACAACTTGAGAAAGG-TGCTTTGAAGC 280
Query 315 AAGAAGATGGACCAATCAGACATACTTTCCCTGGTCATAACCCGTTTGTTGATTCGCCTG 374
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 281 AAGAAGATGGACCAATCAGTCATAGTTTCCCTGGTCATAACCCGTTTGTTGATTCGTCTC 340
Query 375 CGGTCGATGATTTAAGGTCAAGGTCTGTATCTTCTTTGGATTTTAAAGAGGCTCATGTGC 434
| || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 341 CAGTTGATGATTTAAGGTCAAGGTCGGTATCTTCTTTGGATTTTAAAGAGGCTCATTTGC 400
Query 435 TTCCATCAGGACATGTTGAAAGATATGAGGGAAGTCATTGGGTACCTATTGGTTGGACTA 494
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 401 TTCCATCAGGGCATGTTGAGAGATATGAGGGAAGTCATTGGGTACCTATTGGTTGGGCTA 460
Query 495 GAATAACTGAACTAGTTCAAATGGTGCAAGTAAACGCGGAATGGCCTAATCTAGAGTT-A 553
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 461 GAATAACTGAACTAGTTCAAATGGTTCAAGTAAACGCTGAGTGGCCTAATCTAGAGTTGA 520
Query 554 TTGGATGATGAAGACGATGTCCCTGTTACAGATTTAGCGGCTCCGTATTGGGAACGACCA 613
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 521 TT-GATGATGAAGAAGATGTCCCTGTTACAGATTTAGCAGCTCCGTATTGGGAACGACCA 579
Query 614 GGTGGCCCCACATGGTGGTGTCACTTGACTGCTGGAAACTCTTTTGTTGAGGGATGGCTC 673
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 580 GGTGGCCCTACATGGTGGTGTCACTTGTCTGCTGGAAACTCTTTTGTTGAGGGATGGCTT 639
Query 674 AGAAGTGCTACATGGTTGCATCCCGCAATTAGCCTTGCATTGAGGGATGAGAGTAAGCTA 733
||||||||||| ||||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct 640 AGAAGTGCTACGTGGTTGCATCCTGCAATTAGTCTGGCATTGAGGGATGAAAGTAAGCTA 699
Query 734 ATAAGTGAACGGATGAGACATCTTCTATATGAGGTTCCAGTAAGGGTGGCTGGGGGTTTA 793
||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 700 ATAAGTGAACGGATGAGACATCTTCTATATGAGGTTCCAGTGAGAGTAGCTGGTGGTTTA 759
Query 794 TTGTTTGAACTTTTAGGACAATCAGTCGGTGATCCAGTAATCAGTGAGGATGATGTACCC 853
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 760 TTGTTTGAACTTTTAGGACAATCAGTTGGTGATCCAGTAATCAGTGAGGATGATGTACCC 819
Query 854 GTTGTTTTTCGCTCTTGGCAAGCGAAGAACTTCTTGGTATCTGTGATGCACATAAAAGGA 913
|||||||| |||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 820 GTTGTTTTCCGCTCTTGGCAAGCGAAGAACTTCTTAGTTTCCGTGATGCACATAAAAGGA 879
Query 914 AATGTAACGAGTACCAATGTCCTCGGTATCACTGAAGTAGAGGAGCTGCTTTATGCAGGA 973
|||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 880 AATGTAACGAACACCAATGTCCTTGGTATAACTGAAGTAGAGGAGCTGCTTTATGCAGGA 939
Query 974 GGTTATAATGTACCAAGAACGGTTCATGAAGTTATAGCACACTTGGCTTGCCGTCTTTCT 1033
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 940 GGTTATAATGTACCAAGAACGGTTCATGAGGTTATAGCACACTTGGCTTGCCGTCTTTCT 999
Query 1034 CGATGGGATGATAGGTTATTCCGTAAATCCATATTTGGTGCAGCCGATGAAATCGAATTG 1093
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CGATGGGATGATAGATTATTCCGTAAATCCATATTTGGTGCAGCCGATGAAATCGAATTG 1059
Query 1094 AAGTTTATGAACAGGAGAAACTATGAGGATTTGAATCTTTTCAGTATCATTCTCAACCAA 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AAGTTTATGAACAGGAGAAACTATGAGGATTTGAATCTTTTCAGTATCATTCTCAACCAA 1119
Query 1154 GAGATCAGAAAATTATCAAGACAGGTCATCCGAGTGAAGTGGTCACTACACGCGAGAGAG 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GAGATCAGAAAATTATCAAGACAGGTCATCCGAGTGAAGTGGTCACTACACGCGAGAGAG 1179
Query 1214 GAGATTATCTTCGAGCTTCTCCAGCATTTGAGGGGAAACATAGCTCGGCATCTGTTAGAA 1273
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1180 GAGATTATCTTTGAGCTTCTCCAGCATTTGAGGGGAAACATAGCTCGACATCTCTTAGAT 1239
Query 1274 GGTTTGCGAAAGAACACAAGGGAAATGTTGGAGGAACAAGAAGCAGTTCGCGGGCGTCTC 1333
|||||| | ||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 1240 GGTTTGAGGAAGAACACAAGGGAAATGTTGGAAGAACAAGAAGCAGTTCGTGGACGTCTC 1299
Query 1334 TTCACAATTCAAGATGTCATGCAAAGCAGTGTCCGTGCTTGGTTACAGGACAAAAGCTTG 1393
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1300 TTCACAATTCAAGATGTCATGCAAAGCAGTGTCCGCGCTTGGTTACAGGACAAAAGCTTG 1359
Query 1394 AGAGTAAGCCACAACTTGGCCGTGTTTGGAGGATGTGGTCTTGTGCTTACCATAATCGTA 1453
||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct 1360 AGAGTAAGCCACAACTTGGCCGTCTTCGGAGGATGTGGTCTTGTACTTACCATCATCGTA 1419
Query 1454 GGACTGTTTGGGATCAATGTGGATGGTATCCCGGGGGCGCAGAACACGCCTTATGCGTTT 1513
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1420 GGGCTGTTTGGGATCAATGTGGATGGGATCCCGGGGGCGCAGAACACGCCTTATGCGTTT 1479
Query 1514 GGTCTATTCACTGTACTTTTGGTTCTCCTTGGAGCTATTCTGATTGTGGTTGGTTTGGTA 1573
|||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1480 GGTCTATTCACTTTTCTGATGGTTCTCCTTGGGGCTATTCTGATTGTGGTTGGTTTGGTA 1539
Query 1574 TACTTGGGGCTCAAAAAACCCATTACAGAAGAACAAGTTGAAGTTAGAAAGCTGGAGCTA 1633
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1540 TACTTGGGGCTCAAAAAACCCATTACAGAAGAACAAGTAGAAGTTAGAAAGCTGGAGCTA 1599
Query 1634 CAAGACGTGGTTAAGATATTTCAACACGAAGCAGAGACTCATGCCCAACTCCGTAGAAAC 1693
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1600 CAAGACGTGGTTAAGATATTTCAACACGAAGCGGAGACTCATGCCCAACTCCGTAGAAAC 1659
Query 1694 AACCTTTCTCCTACTGCTGGAGATGTGTTTGATGCTGATTATATTCTCATCCAGTAAACA 1753
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1660 AACCTTTCTCCTACTGCTGGAGATGTCTTTGATGCTGATTATATTCTCATCCAGTAAACA 1719
Query 1754 AACTTGGAATCTATTTTCT 1772
|||||||||||||||||||
Sbjct 1720 AACTTGGAATCTATTTTCT 1738
> AT1G29830.3 | Symbols: | Magnesium transporter CorA-like family
protein | chr1:10441053-10445657 FORWARD LENGTH=2235
Length=2235
Score = 2104 bits (1139), Expect = 0.0
Identities = 1436/1578 (91%), Gaps = 26/1578 (2%)
Strand=Plus/Plus
Query 188 AGTAAAAATCATTCAGGTGTTCCCAAGAGTGATCTTTGGACTGATGGGATTATTTGTGCC 247
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 145 AGTAAAAATCATTCAGGTGTTCCGAAGAGTGATCTTTGGACTGATGGGATTATTTGTGCC 204
Query 248 TTTGAGTTTATTCGAGGTCCGAAAAAACATGTTGATTCAAAACAACTGGATAAAGGTTAC 307
||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct 205 TTTGAGTTTATTCGAGGCCCAAAAAAACATGTTGATTCAAAGCAACTTTATAAAGGTTAC 264
Query 308 TTGAAGCAAGAAGATGGACCAATCAGACATACTTTCCCTGGTCATAACCCGTTTGTTGAT 367
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct 265 TTGAAGCAAGAAGATGGACCGATCAGACATAGTTTCCCTGGTCATAACCCGTTTATTGAT 324
Query 368 TCGCCTGCGGTCGATGATTTAAGGTCAAGGTCTGTATCTTCTTTGGATTTTAAAGAGGCT 427
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TCGCCTGCAGTCGATTATTTAAGGTCAAGGTCTGTATCTTCTTTGGATTTTAAAGAGGCT 384
Query 428 CATGTGCTTCCATCAGGACATGTTGAAAGATATGAGGGAAGTCATTGGGTACCTATTGGT 487
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 385 CATGTCCTTCCATCAGGACATGTTGAGAGATCTGAGGGAAGTCATTGGGTACCTATTGGT 444
Query 488 TGGACTAGAATAACTGAACTAGTTCAA-ATGGTGCAAGTAAACGCGGAATGGCCTAATCT 546
||||||||||||||| ||||||||||| | ||| |||||||||||||| |||||||||||
Sbjct 445 TGGACTAGAATAACTAAACTAGTTCAACA-GGTTCAAGTAAACGCGGAGTGGCCTAATCT 503
Query 547 AGAGTT-ATTGGATGATGAAGACGATGTCCCTGTTACAGATTTAGCGGCTCCGTATTGGG 605
| |||| ||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 504 AAAGTTGATT-GATGATGAAGAAGATGTTCCTGTTACAGATTTAGCAGCTCCGTATTGGG 562
Query 606 AACGACCAGGTGGCCCCACATGGTGGTGTCACTTGACTGCTGGAAACTCTTTTGTTGAGG 665
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AACGACCAGGTGGCCCTACATGGTGGTGTCACTTGACTGCTGGAAACTCTTTTGTTGAGG 622
Query 666 GATGGCTCAGAAGTGCTACATGGTTGCATCCCGCAATTAGCCTTGCATTGAGGGATGAGA 725
||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
Sbjct 623 GATGGCTCAGAAGTGCTACGTGGTTGCATCCTGCAATTAGTCTTGCATTGAGGGATGAAA 682
Query 726 GTAAGCTAATAAGTGAACGGATGAGACATCTTCTATATGAGGTTCCAGTAAGGGTGGCTG 785
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 683 GTAAGCTAATAAGTGAACGGATGAGACATCTTCTATATGAGGTTCCGGTGAGGGTTGATG 742
Query 786 GGGGTTTATTGTTTGAACTTTTAGGACAATCAGTCGGTGATCCAGTAATCAGTGAGGATG 845
||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||
Sbjct 743 GGGGTTTATTGTTTGAACTCTTAGGACAATCAATGGGTGATCCAGTAATCGGTGAGGATG 802
Query 846 ATGTACCCGTTGTTTTTCGCTCTTGGCAAGCGAAGAACTTCTTGGTATCTGTGATGCACA 905
|||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||
Sbjct 803 ATGTACCCGTTGTTTTCCGCTCTTGGCAAGCAAAAAACTTTTTGGTATCTGTGATGCACA 862
Query 906 TAAAAGGAAATGTAACGA-GTACCAATGTCCTCGGTATCACTGAAGTAGAGGAGCTGCTT 964
|||||||||||||| | | | | |||||| |||||||||||||||||||||||| |||||
Sbjct 863 TAAAAGGAAATGTATCAAAG-AGCAATGTTCTCGGTATCACTGAAGTAGAGGAGTTGCTT 921
Query 965 TATGCAGG-AGGTTATAATGTACCAAGAACGGTTCATGAAGTTATAGCACACTTGGCTTG 1023
|||||||| || | |||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 922 TATGCAGGGAGCT-ATAATGTACCAAGAACAATTCATGAAGTCATAGCACACTTGGCTTG 980
Query 1024 CCGTCTTTCTCGATGGGATGATAGGTTATTCCGTAAATCCATATTTGGTGCAGCCGATGA 1083
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 981 CCGTCTTTCTCGATGGGATGATAGATTATTTCGTAAATCCATATTTGGTGCTGCCGATGA 1040
Query 1084 AATCGAATTGAAGTTTATGAACAGGAGAAACTATGAGGATTTGAATCTTTTCAGTATCAT 1143
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1041 AATCGAATTGAAGTTTATGAACAGGAGAAACCATGAGGATTTGAATCTTTTTAGTATCAT 1100
Query 1144 TCTCAACCAAGAGATCAGAAAATTATCAAGACAGGTCATCCGAGTGAAGTGGTCACTACA 1203
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1101 TCTCAACCAAGAGATCAGAAAATTAGCAAGACAGACCATCCGAGTGAAGTGGTCACTACA 1160
Query 1204 CGCGAGAGAGGAGATTATCTTCGAGCTTCTCCAGCATTTGAGGGGAAACATAGCTCGGCA 1263
||||||||||||||||||||| |||||||| ||||||||||||||||||||| | || ||
Sbjct 1161 CGCGAGAGAGGAGATTATCTTGGAGCTTCTTCAGCATTTGAGGGGAAACATACCCCGACA 1220
Query 1264 TCTGTTAGAAGGTTTGCGAAAGAACACAAGGGAAATGTTGGAGGAACAAGAAGCAGTTCG 1323
| ||||||| |||||| | || |||||||||||||||||||||||||||||||| || ||
Sbjct 1221 TTTGTTAGAGGGTTTGAGGAATAACACAAGGGAAATGTTGGAGGAACAAGAAGCGGTGCG 1280
Query 1324 CGGGCGTCTCTTCACAATTCAAGATGTCATGCAAAGCAGTGTCCG-TGCTTGGTTACAGG 1382
|| ||||||||||||||||| || ||| ||||||| | |||| | ||||||||||||
Sbjct 1281 TGGACGTCTCTTCACAATTCAGGACAACATTCAAAGCAATATCCGCT-CTTGGTTACAGG 1339
Query 1383 A-CAAAAGC-TTGA-GAGTAAGCCACAACTTGGCCGTGTTTGGAGGATGTGGTCTTGTGC 1439
| |||| || || | | ||| |||| |||||||| | |||||||||||||| |||||||
Sbjct 1340 ATCAAA-GCCTTAATG-GTA-GCCATAACTTGGCTATCTTTGGAGGATGTGGCCTTGTGC 1396
Query 1440 TTACCATAATCGTAGGACTGTTTGG-GATCAATGTGGATGGTATCCCGGGGGCGCAGAAC 1498
| ||||||||| |||||||||| | | |||| |||||||| | ||||| | | || ||
Sbjct 1397 TAACCATAATCTTAGGACTGTTCAGTG-TCAACCTGGATGGTGTTCCGGGTGTGAAGCAC 1455
Query 1499 ACGCCTTATGCGTTTGGTCTA-TTCACTGTACTT-TTGGTTCTCCTTGGAGCTATTCTGA 1556
||||| ||||| |||| ||| |||| |||| || ||||||||| ||||| | ||||||
Sbjct 1456 ACGCCGTATGCATTTG-TCTTGTTCAGTGTA-TTCTTGGTTCTCATTGGAATTGTTCTGA 1513
Query 1557 TTGTGGTTGGTTTG-GTATACTTGGGGCTCAAAAAA-CCCATTACAGAAGAACAAGTTGA 1614
||| | ||||| || | |||| | |||| |||| || ||||| ||||||||||| || ||
Sbjct 1514 TTGCGTTTGGTCTGAG-ATACCTAGGGC-CAAAGAAGCCCATCACAGAAGAACATGTAGA 1571
Query 1615 AGTTAGAAAGCTGGAGCTACAAGACGTGGTTAAGATATTTCAACACGAAGCAGAGACTCA 1674
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1572 AGCTAGAAAGCTGGAGCTACAAAACGTGGTTAAGATATTTCAACACGAAGCAGAGACTCA 1631
Query 1675 TGCCCAACTCCGTAGAAACAACCTTTCTCCTACTGCTGGAGATGTGTTTGATGCTGATTA 1734
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1632 TGCCCAACTCCGGAGAAACAACCTCTCTCCTACTGCTGGAGATGTGTTTGATGCTGATTA 1691
Query 1735 TATTCTCATCCAGTAAAC 1752
| ||||||||||||||||
Sbjct 1692 TTTTCTCATCCAGTAAAC 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87650151570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5