BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473203 Length=1008 Score E Sequences producing significant alignments: (Bits) Value AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-b... 1604 0.0 AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B b... 1587 0.0 AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophy... 1371 0.0 AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light h... 1057 0.0 AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlor... 928 0.0 AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chloro... 152 6e-36 > AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding protein 2 | chr1:10474784-10475959 REVERSE LENGTH=1176 Length=1176 Score = 1604 bits (868), Expect = 0.0 Identities = 965/1012 (95%), Gaps = 5/1012 (0%) Strand=Plus/Plus Query 1 ACTCTCACTCACAAGTTAGTCACCaaaaaaaaaaaaacacaaaaaaTTTTCAATGGCCGC 60 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 16 ACTCTCACTCACAAGTTAGTCATAAAAAAAAAAAAAACACAAAAAAGTTTCAATGGCCGC 75 Query 61 CTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCGC 120 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 76 CTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAACCTTTCCCCTGC 135 Query 121 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 GGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAA 195 Query 181 GGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTC 240 |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct 196 GGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTC 255 Query 241 TGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGC 300 ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 256 TGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGATGGGACACAGC 315 Query 301 CGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 360 || || || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 TGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAG 375 Query 361 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGG 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 376 CAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCCAGGAACGG 435 Query 421 AGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGG 480 ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 436 AGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGATGGAGG 495 Query 481 GCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGC 540 ||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 496 GCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTGGCCATTTGGGC 555 Query 541 CACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATT 600 ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 556 CACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGAAATGGGCCATT 615 Query 601 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTAC 660 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 616 GGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTGGGTTTGGCTAC 675 Query 661 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTAT 720 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 676 CGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGAAGATTGGCTAT 735 Query 721 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAA 780 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 736 GTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGACCGATAGAGAA 795 Query 781 CCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTT 840 ||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||| Sbjct 796 CCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTTGCCACCAACTT 855 Query 841 TGTTCCCGGAAAGTGAGCCAAGTTTTATCCGTTTGTAATTTGCTTTT-TT-CAATCTTTT 898 |||||||||||||||||||||||| |||| ||||||||||| ||||| || ||||||||| Sbjct 856 TGTTCCCGGAAAGTGAGCCAAGTTCTATCTGTTTGTAATTTACTTTTCTTTCAATCTTTT 915 Query 899 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGCAGGTTTGTGTTTGTGATGGATGGTTTGA 958 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || Sbjct 916 GAATTCGAGTGAGAGACAGGAGGAGAAAGAGTAGGTTTGTGTTTGTGGTGGATGGTA-GA 974 Query 959 GACTTTCA-ATGTAAATTTGCAA-GACTTTGTATGATTTGTCATTAATCAAA 1008 |||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 975 GACTTTCAGATGTAAATTTGCAAAGACTTTGTATGATTTGTCATTAATCAAA 1026 > AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B binding protein 3 | chr1:10472280-10473299 REVERSE LENGTH=1020 Length=1020 Score = 1587 bits (859), Expect = 0.0 Identities = 964/1013 (95%), Gaps = 13/1013 (1%) Strand=Plus/Plus Query 1 ACTCTCACTCACAAGTTAGTCACCaaaaaaaaaaaaacaca-aaaaaTTTTCAATGGCCG 59 ||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| Sbjct 1 ACTCTCACTCACAAGTTAGTCACCAAAAAAAAAAAAAAACACAAAAAGTTTCAATGGCCG 60 Query 60 CCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCG 119 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTCCACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCG 120 Query 120 CGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAA 179 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAA 180 Query 180 AGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCT 239 ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct 181 AGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCT 240 Query 240 CTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCG 299 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCG 300 Query 300 CCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACA 359 | ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTGGACTTTCAGCTGATCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACA 360 Query 360 GCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACG 419 |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 361 GCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTGGCTAGGAACG 420 Query 420 GAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAG 479 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 421 GAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTTAGCGATGGAG 480 Query 480 GGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGG 539 | |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 481 GACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTTGGCCATTTGGG 540 Query 540 CCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCAT 599 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 541 CCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCGT 600 Query 600 TGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGT-TTGGCT 658 |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 601 TGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTGGGTCTT-GCT 659 Query 659 ACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCT 718 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 660 ACCGACCCAGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCT 719 Query 719 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAG 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 ATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAG 779 Query 779 AACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAAC 838 ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| Sbjct 780 AACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCAACCAAC 839 Query 839 TTTGTTCCCGGAAAGTGAGCCAAGTTTTATCCGTTTGTAATTTGCTTTT-TT-CAATCTT 896 ||||||||||||||||||||||||||||||| ||||||| ||||||||| || || |||| Sbjct 840 TTTGTTCCCGGAAAGTGAGCCAAGTTTTATCAGTTTGTATTTTGCTTTTCTTTCAGTCTT 899 Query 897 TTGAATTCGAGTGAGAGACAGGAGGAGAAAGAGCAGGTTTGTGTTTGTGATGGATGGTTT 956 |||||||||||||||||||| |||||||||||| ||||| || | ||||||| | || Sbjct 900 TTGAATTCGAGTGAGAGACATGAGGAGAAAGAGAAGGTT-GTAT--GTGATGG-T--TT- 952 Query 957 GAGACTTTCA-ATGTAAATTTGCAAGACTTTGTATGATTTGTCATTAATCAAA 1008 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 953 GAGACTTTCAGATGTAAATTTGCAAGACTTTGTATGATTTGTCATTAATCAAA 1005 > AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478005-10479048 FORWARD LENGTH=1044 Length=1044 Score = 1371 bits (742), Expect = 0.0 Identities = 794/820 (97%), Gaps = 0/820 (0%) Strand=Plus/Plus Query 50 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAC 109 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 64 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTCAAG 123 Query 110 CTTTCCCCCGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 169 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 124 CTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 183 Query 170 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 229 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 243 Query 230 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 289 || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 244 GGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 303 Query 290 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 349 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 304 TGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTAGAA 363 Query 350 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 409 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 364 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 423 Query 410 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTC 469 || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 424 GCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTC 483 Query 470 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTTG 529 |||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||| Sbjct 484 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTG 543 Query 530 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 589 || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 544 GCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 603 Query 590 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 649 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 604 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTG 663 Query 650 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 709 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 664 GGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 723 Query 710 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGA 769 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 724 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGA 783 Query 770 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTC 829 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 784 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCCTTC 843 Query 830 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATC 869 |||||||||||||||||||||||||||||||||||||||| Sbjct 844 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATC 883 > AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522524-14523568 REVERSE LENGTH=1045 Length=1045 Score = 1057 bits (572), Expect = 0.0 Identities = 754/842 (90%), Gaps = 12/842 (1%) Strand=Plus/Plus Query 22 ACCaaaaaaaa-aaaa-ac-acaa-aaa-aTTTTCAATGGCCGCCTCAACAATGGCTCTC 76 ||||||||||| |||| || | || ||| ||| | |||||| ||||||| |||||| | Sbjct 21 ACCAAAAAAAAGAAAACACAAAAACAAAGATTAT-AATGGCTTCCTCAACCATGGCTTTG 79 Query 77 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAACCTTTCCCCCGCGGCATCAGAAGTCCTT 136 |||||||||||||||||||||||||||||||| || || |||||||| ||||| Sbjct 80 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAA------GCCTGCCGCATCAGATGTCCTC 133 Query 137 GGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGTCCATCAGGCAGC 196 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 134 GGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAGGGTCCATCAGGCAGC 193 Query 197 CCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAGC 256 |||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||| Sbjct 194 CCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCCGGCGAGCCCCCGAGC 253 Query 257 TACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGAC 316 ||||||||||| ||||||||||| |||||||||||||||||||| || || || |||||| Sbjct 254 TACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCTGGTCTATCCGCCGAC 313 Query 317 CCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCTC 376 || ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 314 CCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTC 373 Query 377 GGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGAG 436 ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct 374 GGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAA 433 Query 437 GCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGA 496 || ||||||||||||||||||||||||||||||||||| ||||| | || |||||||| Sbjct 434 GCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGC 493 Query 497 AACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTTG 556 ||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||| | Sbjct 494 AACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTC 553 Query 557 ATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGAC 616 |||||||| |||||||||||||||||||| ||| |||| ||||||||||| || |||||| Sbjct 554 ATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGAC 613 Query 617 TTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTTC 676 ||||||||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| ||| Sbjct 614 TTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTC 673 Query 677 GCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGA 736 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 674 GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGA 733 Query 737 TTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTG 796 ||||||||||||||||| ||||| || |||||||| | |||||||| || ||||||||| Sbjct 734 TTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAACCTCGCCGACCATTTG 793 Query 797 GCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGA 856 ||||| ||||| | ||||||||| |||||||||||||||||||| || |||||||||||| Sbjct 794 GCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTCGTCCCCGGAAAGTGA 853 Query 857 GC 858 || Sbjct 854 GC 855 > AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524756-14525763 FORWARD LENGTH=1008 Length=1008 Score = 928 bits (502), Expect = 0.0 Identities = 708/809 (88%), Gaps = 7/809 (1%) Strand=Plus/Plus Query 51 CAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCG-CCGGAAAGGCTGTGAAC 109 ||||||||||||| ||||||||||||||||| |||| ||| | |||||||||| || || Sbjct 61 CAATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTTTGACCGGAAAGGCCGTTAAG 119 Query 110 CTTTCCCCCGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAG-GAAGACTGT 168 || ||||| ||||| || ||||| |||||| |||||| | || ||| | ||| | Sbjct 120 CTATCCCCGGCGGCCTCCGAAGTATTTGGAACCGGCCGAATCACCATGCGCAAAG-C--C 176 Query 169 TGCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTT 228 | ||||||| | |||||||| |||||||||||||||||||| ||||| ||||||||||| Sbjct 177 T-CCAAGCCCACCGGTCCATCCGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTT 235 Query 229 GGGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGG 288 ||| |||||||| || ||||| ||||||||||| || |||||||||||||| || ||||| Sbjct 236 GGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAGTTCCCCGGTGATTACGG 295 Query 289 ATGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGA 348 |||||||| ||||| || || ||||| |||||||| ||||| ||||||||||||||||| Sbjct 296 GTGGGACACTGCCGGTCTATCCGCCGATCCCGAGACCTTCGCTAGGAACCGTGAGCTAGA 355 Query 349 AGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTT 408 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 356 AGTTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATT 415 Query 409 GGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGTTCACAGATCTT 468 ||| ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| Sbjct 416 GGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCACAGATCTT 475 Query 469 CAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTAGTCCACGCTCAGAGCATCTT 528 |||||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||||| Sbjct 476 CAGCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTT 535 Query 529 GGCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGG 588 || |||||||| |||||||||||| | |||||||| ||||| |||||||||||||| || Sbjct 536 AGCCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAGGGCTACAGAGTCGCCGG 595 Query 589 AAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATT 648 | |||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| Sbjct 596 AGATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGGAGCTTCGACCCATT 655 Query 649 GGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGG 708 ||| | ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 656 GGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGG 715 Query 709 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 768 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 716 AAGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGG 775 Query 769 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTT 828 |||| | |||||||| || ||||| ||||| |||||||| | |||||| ||||||||||| Sbjct 776 ACCGTTGGAGAACCTCGCGGACCACTTGGCTGATCCAGTCAACAACAATGCATGGGCCTT 835 Query 829 CGCCACCAACTTTGTTCCCGGAAAGTGAG 857 ||| |||||||| || ||||||||||||| Sbjct 836 CGCTACCAACTTCGTCCCCGGAAAGTGAG 864 > AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll B-binding protein 3 | chr5:22038273-22039568 FORWARD LENGTH=1134 Length=1134 Score = 152 bits (82), Expect = 6e-36 Identities = 310/416 (75%), Gaps = 32/416 (8%) Strand=Plus/Plus Query 443 TGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 502 |||||||| ||||||||||| |||||| ||| || || | || ||||| || ||||| Sbjct 536 TGGTTCAAAGCCGGTTCACAAATCTTCTCCGAAGGCGGTTTGGACTACTTAGGCAACCCA 595 Query 503 AGCTTAGTCCACGCTCAGAGCATCTT-GGCGAT--TTGGGCCACTCAAGTTATCTTGATG 559 | | ||||||| ||||||||||| || | || | || ||| | ||||| ||| | ||| Sbjct 596 AACCTAGTCCATGCTCAGAGCATTTTAGCCG-TCCTT-GGCTTC-CAAGTCATCCTCATG 652 Query 560 GGAGCCGTTGAAGGCTACAG-AGTCGCA-GGAAATG--GGCCATTGG-GAGAGGCCGAGG 614 || |||||||| | | | | || | || || || |||| || ||| | | | Sbjct 653 GGTTTGGTTGAAGGTTTCCGCA-TC-AACGGTCTTGATGG-TGTTGGCGA-AGG-CAACG 707 Query 615 ACTTGCTTTACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGA 669 ||||| ||||||||| || || ||| ||||| |||||| | ||| | || |||| Sbjct 708 ACTTG---TACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGT 762 Query 670 GGCCTTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTA 728 | || |||||| || |||||||| ||| |||||||||||||||||||||||||||||| Sbjct 763 TACTTTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTA 821 Query 729 TGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT- 787 ||||||| ||||| |||||||||||||| ||||| || || || | ||||| || || Sbjct 822 TGTTTGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTT 880 Query 788 GACCAT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 842 |||||| ||| | | || ||| | ||||| || ||||| ||||| || || |||| Sbjct 881 GACCATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49380166501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5