BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473204 Length=1002 Score E Sequences producing significant alignments: (Bits) Value AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophy... 1629 0.0 AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B b... 1306 0.0 AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-b... 1271 0.0 AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light h... 1014 0.0 AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlor... 935 0.0 AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chloro... 139 5e-32 > AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478005-10479048 FORWARD LENGTH=1044 Length=1044 Score = 1629 bits (882), Expect = 0.0 Identities = 965/1005 (96%), Gaps = 5/1005 (0%) Strand=Plus/Plus Query 1 ACCCATTTCTTGGCTTACAACAACAACTCTTAAACGTTTTACTTTGTGCT--AC-ACTCA 57 |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 1 ACCCATTTCTTGGCTTACAACAACAAATCTTAAACGTTTTACTTTGTGCTGCACTACTCA 60 Query 58 ACCTCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTC 117 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 61 ACCTCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTC 120 Query 118 AAGCTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACA 177 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 121 AAGCTTTCCCCCGCGGCATCTGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACT 180 Query 178 ACTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTAC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTAC 240 Query 238 TTGGGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTAC 297 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 241 TTGGGTCCATTCTCTGGCGAATCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTAC 300 Query 298 GGATGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTA 357 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 301 GGATGGGACACCGCCGGACTTTCAGCTGACCCCGAGACATTCGCAAGGAACCGTGAACTA 360 Query 358 GAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTT 417 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 GAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTT 420 Query 418 TTGGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATC 477 ||||| || ||||||||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 421 TTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATC 480 Query 478 TTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATC 537 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 481 TTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATT 540 Query 538 TTGGCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCA 597 ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 TTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCA 600 Query 598 GGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCA 657 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 601 GGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCA 660 Query 658 TTGGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAAC 717 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 661 TTGGGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAAC 720 Query 718 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAG 777 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 721 GGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAG 780 Query 778 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCC 837 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 781 GGACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTAACAACAACGCATGGGCC 840 Query 838 TTCGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTTATCTGTATTTTGCTTCAGT 897 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 841 TTCGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTT-ATCTGTATTTTGCTTCAGT 899 Query 898 CTTTGCTTCGTGTGAGTGAGAGGAGAAAGAGAGGTTGTATAGATGTAAAATTTGCAAGAC 957 |||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 900 CTTTGCTTCGTGAGTGTGAGAGGAGAAAGAGAGCTTGTTTAGATGTAAAATTTGCAAGAC 959 Query 958 TTTGTGTAATTTTTCATTAATCAAATAACTCGTTTTTCTCTCAAA 1002 ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 960 TTTGTATT-TTTTTCATTAATCAAATAACTCGTTTTTCTCTCAAA 1003 > AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B binding protein 3 | chr1:10472280-10473299 REVERSE LENGTH=1020 Length=1020 Score = 1306 bits (707), Expect = 0.0 Identities = 834/893 (93%), Gaps = 17/893 (2%) Strand=Plus/Plus Query 61 TCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAG 120 |||||||||||||| || ||||||||||||||||||||||||||||||||||| || || Sbjct 51 TCAATGGCCGCCTCCACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAC 110 Query 121 CTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT 180 ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| | Sbjct 111 CTTTCCCCCGCGGCATCTGAAGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 170 Query 181 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 240 |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 171 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 230 Query 241 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 300 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 231 GGTCCATTCTCTGGCGAGTCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 290 Query 301 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 360 ||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 291 TGGGACACCGCTGGACTTTCAGCTGATCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 350 Query 361 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 420 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 351 GTTATCCACAGCAGGTGGGCTATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 410 Query 421 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTC 480 || |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct 411 GCTAGGAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTT 470 Query 481 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTG 540 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 471 AGCGATGGAGGACTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATTTTG 530 Query 541 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 600 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 531 GCCATTTGGGCCACTCAAGTTATCTTGATGGGAGCTGTTGAAGGCTACAGAGTCGCAGGA 590 Query 601 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 660 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 591 AATGGGCCGTTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTCGACCCATTG 650 Query 661 GGT-TTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGG 719 ||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 651 GGTCTT-GCTACCGACCCAGAGGCTTTCGCGGAGTTGAAGGTGAAGGAGCTCAAGAACGG 709 Query 720 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 AAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGG 769 Query 780 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTT 839 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 770 ACCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTT 829 Query 840 CGCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTT-T-A-TCTGTATTTTGCTT--C 894 ||| |||||||||||||||||||||||||||||||||| | | | |||||||||||| | Sbjct 830 CGCAACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTATCAGTTTGTATTTTGCTTTTC 889 Query 895 ----AGTCTTT-GC-TTCGTGTGAGTGA---GAGGAGAAAGAGA-GGTTGTAT 937 ||||||| | |||| ||||| || ||||||||||||| |||||||| Sbjct 890 TTTCAGTCTTTTGAATTCGAGTGAGAGACATGAGGAGAAAGAGAAGGTTGTAT 942 > AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding protein 2 | chr1:10474784-10475959 REVERSE LENGTH=1176 Length=1176 Score = 1271 bits (688), Expect = 0.0 Identities = 779/824 (95%), Gaps = 1/824 (0%) Strand=Plus/Plus Query 61 TCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAG 120 ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || Sbjct 65 TCAATGGCCGCCTCAACAATGGCTCTCTCCTCCCCTGCTTTCGCCGGAAAGGCTGTGAAC 124 Query 121 CTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT 180 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 125 CTTTCCCCTGCGGCATCAGAAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTT 184 Query 181 GCCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTG 240 |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 185 GCCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTG 244 Query 241 GGCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGA 300 || ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct 245 GGTCCATTCTCTGGCGAGTCACCCAGCTACCTTACCGGAGAGTTCCCTGGAGACTACGGA 304 Query 301 TGGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 360 |||||||| || || || || || |||||||||||||||||||||||||||||||||||| Sbjct 305 TGGGACACAGCTGGTCTATCCGCTGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAA 364 Query 361 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTG 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 365 GTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTCTTCCCTGAGCTTTTG 424 Query 421 GCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTC 480 |||||||||||||||||||| |||||||| |||||||||||||| || || ||||||||| Sbjct 425 GCCAGGAACGGAGTCAAGTTTGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTC 484 Query 481 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTG 540 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 485 AGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTCACGCTCAGAGCATTTTG 544 Query 541 GCGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGA 600 || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 545 GCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGTTACAGAGTCGCAGGA 604 Query 601 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTG 660 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 605 AATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGTTTCGACCCATTG 664 Query 661 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 720 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 665 GGTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTAAAGGAGCTCAAGAACGGA 724 Query 721 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGA 780 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 725 AGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGGA 784 Query 781 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTC 840 |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct 785 CCGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTCAACAACAACGCTTGGGCCTTT 844 Query 841 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTTTTATCTGT 884 ||||||||||||||||||||||||||||||||||| | |||||| Sbjct 845 GCCACCAACTTTGTTCCCGGAAAGTGAGCCAAGTTCT-ATCTGT 887 > AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522524-14523568 REVERSE LENGTH=1045 Length=1045 Score = 1014 bits (549), Expect = 0.0 Identities = 723/808 (89%), Gaps = 8/808 (1%) Strand=Plus/Plus Query 63 AATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAGCT 122 |||||| |||||||||||||| | |||||||||||||||||||||||||| || ||| Sbjct 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAG-- 112 Query 123 TTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACAACT-G 181 || || |||||||| ||||| ||||||||||||||||| ||||||||||| | | Sbjct 113 ----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGAC-TGTCG 167 Query 182 CCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGG 241 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227 Query 242 GCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGAT 301 | |||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287 Query 302 GGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAG 361 |||||||||| || || || |||||||| ||||| ||||| ||||||||||||||||||| Sbjct 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347 Query 362 TTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGG 421 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407 Query 422 CCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTCA 481 | ||||||||||| ||||||||||| || ||||||||||||||||| || |||||||||| Sbjct 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467 Query 482 GCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTGG 541 |||| ||||| | || |||||||| ||||| |||||||||||||||||||||||||| | Sbjct 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527 Query 542 CGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAA 601 | |||||||| |||||||||||| | |||||||| |||||||||||||||||||| ||| Sbjct 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587 Query 602 ATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGG 661 |||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||| Sbjct 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647 Query 662 GTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 721 | | ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 648 GCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 707 Query 722 GATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGAC 781 | ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| Sbjct 708 GGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGAC 767 Query 782 CGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCG 841 | | |||||||| || |||||||||||||| ||||| | ||||||||| |||||||||| Sbjct 768 CTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCG 827 Query 842 CCACCAACTTTGTTCCCGGAAAGTGAGC 869 |||||||||| || |||||||||||||| Sbjct 828 CCACCAACTTCGTCCCCGGAAAGTGAGC 855 > AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524756-14525763 FORWARD LENGTH=1008 Length=1008 Score = 935 bits (506), Expect = 0.0 Identities = 727/835 (87%), Gaps = 9/835 (1%) Strand=Plus/Plus Query 37 TTTTACTTTGTGCTACACTC-AACCTCAATGGCCGCCTCAACCATGGCTCTCTCCTCCCC 95 |||||| ||| || |||||| ||| ||||||||||||| || |||||||||||||| || Sbjct 36 TTTTAC-TTGCGCCACACTCTCACCGCAATGGCCGCCTCGACAATGGCTCTCTCCTCTCC 94 Query 96 TGCCTTCG-CCGGAAAGGCCGTCAAGCTTTCCCCCGCGGCATCAGACGTCCTTGGAAGCG 154 || ||| | ||||||||||||| ||||| ||||| ||||| || || || |||||| || Sbjct 95 TG-CTTTGACCGGAAAGGCCGTTAAGCTATCCCCGGCGGCCTCCGAAGTATTTGGAACCG 153 Query 155 GCCGTGTGACAATGAG-GAAGACAACTGCCAAGCCAAAGGGCCCATCAGGCAGCCCATGG 213 |||| | || ||| | ||| | || ||||||| | || ||||| |||||||||||| Sbjct 154 GCCGAATCACCATGCGCAAAG-C--CT-CCAAGCCCACCGGTCCATCCGGCAGCCCATGG 209 Query 214 TACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAGCTACCTT 273 |||||||| ||||| |||||||||||||| |||||||| || ||||| ||||||||||| Sbjct 210 TACGGATCCGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCTCCGAGCTACCTC 269 Query 274 ACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGACCCCGAG 333 || |||||||||||||| || ||||| |||||||| ||||| || || ||||| |||||| Sbjct 270 ACTGGAGAGTTCCCCGGTGATTACGGGTGGGACACTGCCGGTCTATCCGCCGATCCCGAG 329 Query 334 ACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCC 393 || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 330 ACCTTCGCTAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCTCGGAGCC 389 Query 394 CTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGAGGCCGTT 453 ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || ||| Sbjct 390 CTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGAAGCGGTT 449 Query 454 TGGTTCAAGGCCGGCTCTCAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCT 513 ||||||||||| || || |||||||||||||| ||||| | || |||||||| ||||| Sbjct 450 TGGTTCAAGGCTGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGGCAACCCG 509 Query 514 AGCTTGGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTTGATGGGA 573 |||||||||||||||||||||||||| || |||||||| |||||||||||| | |||||| Sbjct 510 AGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCTCATGGGA 569 Query 574 GCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTT 633 || ||||| |||||||||||||| ||| |||| ||||||||||| || |||||||||||| Sbjct 570 GCTGTTGAGGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGACTTGCTT 629 Query 634 TACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTTCGCTGAG 693 ||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| ||||| ||| Sbjct 630 TACCCAGGTGGGAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTTCGCGGAG 689 Query 694 TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTC 753 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 690 TTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGGATTCTTC 749 Query 754 GTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTTGGCCGAT 813 ||||| ||||||||||| || ||||||||| | |||||||| || ||||| ||||| ||| Sbjct 750 GTTCAGGCCATTGTCACCGGAAAGGGACCGTTGGAGAACCTCGCGGACCACTTGGCTGAT 809 Query 814 CCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTGAG 868 ||||| | |||||| |||||||||||||| |||||||| || ||||||||||||| Sbjct 810 CCAGTCAACAACAATGCATGGGCCTTCGCTACCAACTTCGTCCCCGGAAAGTGAG 864 > AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll B-binding protein 3 | chr5:22038273-22039568 FORWARD LENGTH=1134 Length=1134 Score = 139 bits (75), Expect = 5e-32 Identities = 182/232 (78%), Gaps = 14/232 (6%) Strand=Plus/Plus Query 631 CTT-TACCCCGGT-GG---TAGCTTCGACCCATTGGGTTTGGCT-ACCGACCCAGAGGCC 684 ||| ||||||||| || || ||| ||||| |||||| | ||| | || |||| | Sbjct 709 CTTGTACCCCGGTGGGCAATA-CTTTGACCCGTTGGGTCTCGCTGA-TGATCCAGTTACT 766 Query 685 TTCGCTGAG-TTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 743 || |||||| || |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 767 TTTGCTGAGCTT-AAGGTGAAAGAGATCAAGAACGGAAGATTGGCTATGTTCTCTATGTT 825 Query 744 TGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCT-GACC 802 ||| ||||| |||||||||||||| ||||| || || || | ||||| || || |||| Sbjct 826 TGGCTTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCTTTGGAGAATCTC-CTTGACC 884 Query 803 AT-TTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTG 853 || ||| | | || ||| | ||||| || ||||| ||||| || || |||| Sbjct 885 ATCTTGACA-ACCCTGTTGCTAACAATGCGTGGGCTTTCGCAACTAAGTTTG 935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49078761619 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5