BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473243
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30220.1 | Symbols: ATINT2, INT2 | inositol transporter 2 | ... 2883 0.0
> AT1G30220.1 | Symbols: ATINT2, INT2 | inositol transporter 2
| chr1:10632821-10635471 REVERSE LENGTH=1911
Length=1911
Score = 2883 bits (1561), Expect = 0.0
Identities = 1695/1762 (96%), Gaps = 0/1762 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaaTGGAGGAAGGAATAATACATGGAGGAGCTGATGAATCAGCTTTCAAAGAAT 60
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 25 AAAAAAAAATGGAGGGAGGAATAATACATGGAGGAGCAGATGAATCAGCTTTCAAAGAAT 84
Query 61 GTTTCTCTCTAACATGGAAGAATCCTTATGTTCTTCGTCTTGCTTTCTCTGCCGGAATCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GTTTCTCTCTAACATGGAAGAATCCTTATGTTCTTCGTCTTGCTTTCTCTGCCGGAATCG 144
Query 121 GTGGTCTTCTCTTTGGTTATGACACTGGAGTGATATCAGGAGCTCTGCTTTATATCAGAG 180
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 145 GTGGTCTTCTCTTTGGTTACGACACCGGAGTGATATCAGGTGCTCTGCTTTATATCAGAG 204
Query 181 ATGATTTCAAGTCTGTTGACAGAAATACTTGGTTACAGGAGATGATAGTGAGCATGGCGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 205 ATGATTTCAAGTCTGTTGACAGAAATACTTGGTTACAGGAGATGATAGTGAGCATGGCAG 264
Query 241 TTGCAGGAGCCATAGTTGGAGCCGCCATAGGAGGTTGGGCGAACGATAAATTCGGGAGGA 300
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 265 TTGCAGGAGCCATCGTTGGAGCCGCCATAGGAGGTTGGGCGAACGACAAATTAGGGAGGA 324
Query 301 GAAGCGCGATTCTCATGGCGGATTTCCTCTTTTTATTAGGAGCTATCATTATGGCGGCAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 325 GAAGCGCGATTCTCATGGCGGATTTCCTCTTTTTATTAGGAGCTATCATTATGGCGGCTG 384
Query 361 CTCCTAACCCGTCCCTCCTTGTCGTTGGCCGTGTATTTGTGGGACTCGGGGTTGGGATGG 420
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 385 CTCCTAACCCGTCCCTCCTTGTCGTTGGCCGTGTTTTTGTGGGCCTCGGGGTCGGGATGG 444
Query 421 CCTCGATGACCGCTCCTCTATACATCTCAGAAGCTTCTCCTGCCAAGATTAGAGGAGCTT 480
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 445 CCTCGATGACCGCTCCTCTATACATCTCAGAAGCTTCGCCTGCTAAGATCAGAGGAGCTT 504
Query 481 TGGTCAGTACCAATGGGTTTCTCATTACCGGAGGACAGTTCTTGTCTTACCTCATCAACT 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 505 TGGTCAGTACTAATGGGTTTCTCATTACCGGAGGACAGTTCTTGTCTTACCTCATAAACT 564
Query 541 TAGCCTTTACTGATGTGACCGGAACGTGGAGATGGATGCTCGGAATCGCTGGAATTCCCG 600
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 565 TAGCCTTTACTGATGTGACCGGAACGTGGAGATGGATGCTCGGAATCGCCGGAATTCCAG 624
Query 601 CTCTTTTGCAGTTTATCCTAATGTTTACACTCCCGGAGTCTCCTCGTTGGTTATACCGCA 660
||||||| |||||| || |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 625 CTCTTTTACAGTTTGTCTTAATGTTTACACTCCCGGAGTCACCTCGATGGTTATACCGCA 684
Query 661 AGGGAAGAGAAGAAGAGGCTAAAGCGATTCTGAGAAGAATATATTCAGCAGAAGATGTAG 720
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 685 AGGGAAGAGAAGAAGAGGCTAAAGCGATTCTAAGAAGAATATACTCAGCAGAAGATGTAG 744
Query 721 ACCAAGAGATTCGTGCACTTAAAGACTCAGTTGAGTTAGAGATACTCGAAGAAGGATCAT 780
| |||||||| ||||||||||||||||||||||| ||||||||| |||||||| || |
Sbjct 745 AACAAGAGATACGTGCACTTAAAGACTCAGTTGAAACAGAGATACTTGAAGAAGGGTCTT 804
Query 781 CTGAGAAAATCAACATGATCAAACTATGCAAAGCCAAAACTGTTAGACGAGGACTAATAG 840
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 805 CCGAGAAAATCAACATGATCAAACTATGCAAAGCTAAAACCGTTAGACGAGGACTAATAG 864
Query 841 CTGGTGTTGGTCTCCAAGTGTTTCAACAGTTCGTTGGAATCAACACAGTTATGTATTACA 900
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 865 CTGGTGTTGGTCTCCAAGTGTTTCAACAGTTCGTTGGGATCAACACAGTTATGTATTACA 924
Query 901 GTCCAACCATTGTTCAGCTCGCCGGTTTCGCTTCAAACAGAACAGCTCTTCTCTTATCTC 960
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 925 GTCCAACCATTGTTCAGCTTGCCGGTTTCGCTTCAAACAGAACAGCTCTTCTCTTGTCTC 984
Query 961 TAGTTACCGCAGGACTTAACGCATTTGGTTCCATCATTAGCATTTACTTCATTGATAGAA 1020
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 985 TAGTTACCGCAGGACTTAATGCATTTGGTTCTATAATTAGCATTTACTTCATTGATAGAA 1044
Query 1021 CCGGAAGGAAAAAGCTTTTGATCATTAGCCTTTTCGGAGTCATTATCTCGCTAGGAATAC 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TCGGAAGGAAAAAGCTTTTGATCATTAGCCTTTTCGGAGTCATTATCTCGCTAGGAATAC 1104
Query 1081 TAACCGGTGTTTTCTATGAAGCGACTACTCACGCTCCTGCGATTAGCTCTCTCGAGACAC 1140
||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1105 TAACCGGTGTTTTTTATGAAGCGGCTACTCACGCTCCTGCGATTAGCTCACTCGAGACAC 1164
Query 1141 AAAGGTTCAATAATATTACTTGTCCTGATTATAAGTCAGCTATGAATACCAATGCTTGGG 1200
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1165 AAAGGTTCAATAATATTAGTTGTCCGGATTATAAGTCAGCTATGAATACCAATGCTTGGG 1224
Query 1201 ATTGTATGACTTGTTTGAAAGCTTCTTCTCCATCTTGTGGCTACTGTTCTTCTCCCACTG 1260
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 1225 ATTGTATGACTTGTTTGAAAGCTTCTTCTCCATCTTGTGGCTATTGTTCCTCTCCCATTG 1284
Query 1261 GAAAGGAACATCCCGGGGCTTGTTGGATCTCTGATGATTCGGTTAAGGACTTATGTCATA 1320
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 GAAAGGAACATCCCGGGGCATGTTGGATCTCTGATGATTCGGTTAAGGACTTATGTCATA 1344
Query 1321 ACGAAAACCGGCTTTGGTACACGAGAGGATGTCCTAGTAATTTTGGTTGGTTTGCTCTTC 1380
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1345 ACGAAAACCGGCTTTGGTACACGAGAGGATGTCCTAGCAATTTTGGTTGGTTTGCTCTTC 1404
Query 1381 TTGGATTGGGACTTTATATCATTTTCTTCTCTCCTGGAATGGGGACTGTTCCATGGATAG 1440
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1405 TTGGATTGGGACTTTATATCATCTTCTTCTCTCCTGGAATGGGGACTGTTCCATGGATAG 1464
Query 1441 TTAACTCAGAGATTTATCCATTGAGATTCAGAGGAGTCTGTGGAGGAATAGCTGCAACTG 1500
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1465 TTAACTCAGAGATTTATCCATTGAGATTCAGAGGAATATGTGGAGGAATAGCTGCAACTG 1524
Query 1501 CAAATTGGATATCGAATTTGATTGTGGCTCAATCTTTTTTGTCACTGACTGAAGCTATTG 1560
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1525 CAAATTGGATATCAAATTTGATTGTGGCTCAATCTTTTTTGTCATTGACCGAAGCTATTG 1584
Query 1561 GGACTTCTTGGACTTTTCTCATATTTGGAGTGATCTCAGTCATTGCTCTTCTCTTTGTTG 1620
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1585 GGACTTCTTGGACTTTTCTCATCTTTGGAGTGATCTCAGTCATTGCTCTTCTCTTTGTTA 1644
Query 1621 TGGTTTGTGTTCCGGAGACAAAAGGAATGCCAATGGAGGAGATTGAGAAGATGCTTGAAG 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 TGGTTTGTGTTCCGGAGACAAAAGGAATGCCAATGGAGGAGATTGAGAAGATGCTTGAAC 1704
Query 1681 GAAGATCTATGGAGTTTAAGTTTTGGAAGAAAATATCAAAACCTGTTGAGAAACAAAACC 1740
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1705 GAAGATCGATGGAGTTTAAGTTTTGGAAGAAAAAATCAAAACTTGTTGAGAAACAAAACC 1764
Query 1741 AGAGTGCATGAGAGAAACTCTT 1762
||||||||||||||||||||||
Sbjct 1765 AGAGTGCATGAGAGAAACTCTT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92017598985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5