BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473251 Length=1644 Score E Sequences producing significant alignments: (Bits) Value AT1G30280.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 2333 0.0 AT1G30282.1 | Symbols: | other RNA | chr1:10663332-10664763 FO... 725 0.0 > AT1G30280.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:10662663-10664668 REVERSE LENGTH=1654 Length=1654 Score = 2333 bits (1263), Expect = 0.0 Identities = 1539/1665 (92%), Gaps = 48/1665 (3%) Strand=Plus/Plus Query 1 ACACTCTCTTTACTTCGTCG-TCtttttttCTTCAGAATTTCCGGTGACCGGAGCCaaaa 59 |||||||||||||||||||| | |||||||||| ||| |||||||||| ||||||| Sbjct 17 ACACTCTCTTTACTTCGTCGCTTTTTTTTTCTTTAGACTTTCCGGTGATCGGAGCC---- 72 Query 60 aaaaaaagaaaagaaaaaCATCACCGGGGAAATGGACGAATCGTGGCGTATGAAGATGGG 119 |||||||| |||| | ||||||| |||||||||||||| ||||||||||||||||| Sbjct 73 AAAAAAAG----GAAAGA-TTCACCGGCGAAATGGACGAATCTTGGCGTATGAAGATGGG 127 Query 120 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCCATGGATGCTCGAATCGACGC 179 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 128 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCAATGGATGCTCGTATCGACGC 187 Query 180 GGAAGACTTCGCCGATGTTTTCGGCGGTCCGCCGCGAACTC-TCCTCACCCGAAAATTTT 238 |||||||||||| ||||||||||||||||||||||||| | | |||||||||||||||| Sbjct 188 GGAAGACTTCGCTGATGTTTTCGGCGGTCCGCCGCGAA-GCGTTCTCACCCGAAAATTTT 246 Query 239 CCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGGTTTTCCGGCCTCCGGGGAA-- 296 |||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||| Sbjct 247 CCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGATTTTTCAGCCTCC-GGGAACT 305 Query 297 TT-T-CTCCGGGGGCTCTCTTCCATCTTCTAAATCTCACGGAAGAAATTTACCATCGTTC 354 || | |||||| ||||||||| | ||||||||||||||||||||||| ||||| | ||| Sbjct 306 TTCTCCTCCGGCGGCTCTCTTGCGTCTTCTAAATCTCACGGAAGAAACTTACCGGCATTC 365 Query 355 AGAATTCCGTCCGGCGGAGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGGTCG 414 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 366 AGAATTCCGTCCGGCGGGGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGTTCT 425 Query 415 GCGAAAGAGGGATCGAAAATACAGAGCTCGATGGCGAAATCGAGATCAAATTCATCGTCG 474 ||||| || |||||||||| ||||||||||||| ||||| | ||||| |||||||||||| Sbjct 426 GCGAAGGAAGGATCGAAAAAACAGAGCTCGATGACGAAACCAAGATCGAATTCATCGTCG 485 Query 475 ATGCTTTCTTCCGAGGAGGTCAGTCCTCACAACCCTCCACCAGCAGCAGCTTCCGGCGAC 534 ||||| ||||||||||||| |||||||||| | ||||||||||| ||||||||||||||| Sbjct 486 ATGCTCTCTTCCGAGGAGGCCAGTCCTCACTATCCTCCACCAGCGGCAGCTTCCGGCGAC 545 Query 535 GACTCCGGATTTTCTTCTTTCACATCTAGACTCAGACCGTTAAACGTCCCGTCAAGAAGT 594 ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 546 GACTCCGGATTCTCTTCTTTCACTTCTAGACTTAGACCGTTAAACGTCCCGTCGAGAAGT 605 Query 595 CATAAACGAGAGCCAAAGAAACAGAGTTTCTCGGCGTTTCCAACAGCCAAAGATTCATTT 654 |||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct 606 CATAAACGAGAGTCAAAGAAACAGAGTTTCTCGGCGGTTCCAAAAGCAAAAGATTCATTT 665 Query 655 TCCGGCCAAAATAACACACCGGAAAAAGCTGATTTTTACTACAAAAAACCACATTTCGGC 714 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 666 TCCGGCCAAAATAACACACCGGAAAAAGCTGATTTCTACTACAAAAAAACACATTTCGGC 725 Query 715 GGATCAAGAAGAGCCTCGCCAGAAACCATAAGCTTGGATCCAAATTCCTTCAGAAGAATG 774 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 726 GGATCAAGAAGAGCCTCGCCAGAAACCATAAGCTTGGATCCGAATTCCTTCAGAAGAATG 785 Query 775 GATGATTACGGACCAAGCTCTCCTGCATCTTCCCCTGTTTCTTCCTTCATCTGCGAAGAA 834 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 786 GATGACTACGGACCAAGCTCCCCTGCATCTTCCCCTGTTTCTTCCTTCATCTGCGAAGAA 845 Query 835 GAAGACGACAACACTCATGCAAAACAGAGAACCACCAGAGACTGTAAAGTCGAAGACGTA 894 |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| | Sbjct 846 GAAGACGACAACACTCATGCTAAACAGAGAACAAACAGAGACTGTAAAGTCGAAGA-G-- 902 Query 895 GTAGTCGTagaagatgaagaagac---gaagaagaagagaTGAGCTCTTACGTAATTGAG 951 ||||| |||||||||||||||||| |||||||||||||||||||||||||| || ||| Sbjct 903 GTAGTAGTAGAAGATGAAGAAGACGAAGAAGAAGAAGAGATGAGCTCTTACGTCATCGAG 962 Query 952 ATAAACTCAGATCGATTCGATCGTTACAGAGAAGAaggaggaggaggaggaggaggaAAT 1011 |||||||||||||||||||| || |||||||||| | |||||||||||||||||||||| Sbjct 963 ATAAACTCAGATCGATTCGACCGATACAGAGAAG-A--AGGAGGAGGAGGAGGAGGAAAT 1019 Query 1012 TCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCAAAAGAGAGATCTCAACGACCA 1071 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| Sbjct 1020 TCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCTAAAGAAAGATCTCAAAGACCA 1079 Query 1072 GAAGCAAAACAAATagaagaagacgtaatcgattcaagaagaagtgaagaagaacccaaa 1131 |||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1080 GAAGCAAAGCAAACAGAAGAAGATGTAATCGATTCGAGAAGAAGTGAAGAAGAACCCAAA 1139 Query 1132 tcagaagaagagatggagatggagatgaaagatgaagagataagaaTCTGGTTAACCGGA 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TCAGAAGAAGAGATGGAGATGGAGATGAAAGATGAAGAGATAAGAATCTGGTTAACCGGA 1199 Query 1192 AAAGAGACAAACATTAGACTTCTCCTCTCAACTTTACATCATGTT-TTGTGGTCAAATAG 1250 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1200 AAAGAGACAAACATTAGACTTCTCCTCTCAACTTTACATCATGTTCTT-TGGTCAAATAG 1258 Query 1251 CAATTGGCATTCAATTCCTTTAGCAAATCTTCGAGATGGATCACAAGTGAAGAAAGCTTA 1310 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 CAATTGGGATTCGATTCCTTTAGCAAATCTTCGAGATGGATCACAAGTGAAGAAAGCTTA 1318 Query 1311 TCAAAAAGCTCGGCTTTGTTTACATCCAGATAAGCTACAACAAAGAGGAGGAACTTCACC 1370 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 TCAAAGAGCTCGGCTTTGTTTACATCCAGATAAGCTACAACAAAGAGGAGGAACTTCACC 1378 Query 1371 GATTCAAAAATCTGTCGCGAGTAGAGTTTTCGCCATTCTTCAGGAAGCGTGGGCTGTGTA 1430 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1379 GATTCAAAAATCTGTCGCGAGTAGAGTTTTCGCCATTCTTCAGGAAGCATGGGCTGTGTA 1438 Query 1431 CGTAACAAATGAAGGTCTCTCGAGCTAAACCGGAATCCGCAAACAATATTCTTTTGGTTT 1490 ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1439 CGTAACAAATGAAGGACTCTCGAGCTAAACCGGAATCCGCAAACTACATTCTTTTGGTTT 1498 Query 1491 ATATTAAACCGGAGGTGTTCAGAATCGGTTTATAATAATGTAAGAAGAACAAGAGCAAAG 1550 |||||||||| || |||||||||||||||| |||||||||||| |||||||||| Sbjct 1499 ATATTAAACCAGA-------AGAATCGGTTTATAATCATGTAAGAAGAATAAGAGCAAAG 1551 Query 1551 TTATaaaaaaaaTGttt-ttt-tttttttGTAAAAG--T------CATATGAACATTCCC 1600 ||| || |||| |||| ||| |||||||||||||| | ||||||||||||||| Sbjct 1552 TTA-AAGGAAAA-GTTTGTTTGTTTTTTTGTAAAAGACTAAAAGTCATATGAACATTCCC 1609 Query 1601 ATGTGT-GCCTTTGTATATTCCATTGTCAATGTTCTTATATACAG 1644 |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1610 ATGTGTTGCCTTTGTATATTCCATTGTCAATGTTCTTATATACAG 1654 > AT1G30282.1 | Symbols: | other RNA | chr1:10663332-10664763 FORWARD LENGTH=1314 Length=1314 Score = 725 bits (392), Expect = 0.0 Identities = 516/573 (90%), Gaps = 19/573 (3%) Strand=Plus/Minus Query 1 ACACTCTCTTTACTTCGTCG-TCtttttttCTTCAGAATTTCCGGTGACCGGAGCCaaaa 59 |||||||||||||||||||| | |||||||||| ||| |||||||||| ||||||| Sbjct 1203 ACACTCTCTTTACTTCGTCGCTTTTTTTTTCTTTAGACTTTCCGGTGATCGGAGCC---- 1148 Query 60 aaaaaaagaaaagaaaaaCATCACCGGGGAAATGGACGAATCGTGGCGTATGAAGATGGG 119 |||||||| |||| | ||||||| |||||||||||||| ||||||||||||||||| Sbjct 1147 AAAAAAAG----GAAAGA-TTCACCGGCGAAATGGACGAATCTTGGCGTATGAAGATGGG 1093 Query 120 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCCATGGATGCTCGAATCGACGC 179 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1092 TTTAAGCGTTGATCCATTCTTCTCCATTGCTCGTAAATCAATGGATGCTCGTATCGACGC 1033 Query 180 GGAAGACTTCGCCGATGTTTTCGGCGGTCCGCCGCGAA-C-TCTCCTCACCCGAAAATTT 237 |||||||||||| ||||||||||||||||||||||||| | | || |||||||||||||| Sbjct 1032 GGAAGACTTCGCTGATGTTTTCGGCGGTCCGCCGCGAAGCGT-TC-TCACCCGAAAATTT 975 Query 238 TCCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGGTTTTCCGGCCTCCGGGGAA- 296 ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| || Sbjct 974 TCCGGCGACTTCTCTCGTTCCGACTGTTTCTACGACGAGATTTTTCAGCCTCCGGG-AAC 916 Query 297 TTTCTCCG--GG-GGCTCTCTTCCATCTTCTAAATCTCACGGAAGAAATTTACCATCGTT 353 ||||||| || ||||||||| | ||||||||||||||||||||||| ||||| | || Sbjct 915 TTTCTCCTCCGGCGGCTCTCTTGCGTCTTCTAAATCTCACGGAAGAAACTTACCGGCATT 856 Query 354 CAGAATTCCGTCCGGCGGAGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGGTC 413 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 855 CAGAATTCCGTCCGGCGGGGAAGGATTTTACGACGGCGTGTTTGGTGGTCGCGGCGGTTC 796 Query 414 GGCGAAAGAGGGATCGAAAATACAGAGCTCGATGGCGAAATCGAGATCAAATTCATCGTC 473 ||||| || |||||||||| ||||||||||||| ||||| | ||||| ||||||||||| Sbjct 795 TGCGAAGGAAGGATCGAAAAAACAGAGCTCGATGACGAAACCAAGATCGAATTCATCGTC 736 Query 474 GATGCTTTCTTCCGAGGAGGTCAGTCCTCACAACCCTCCACCAGCAGCAGCTTCCGGCGA 533 |||||| ||||||||||||| |||||||||| | ||||||||||| |||||||||||||| Sbjct 735 GATGCTCTCTTCCGAGGAGGCCAGTCCTCACTATCCTCCACCAGCGGCAGCTTCCGGCGA 676 Query 534 CGACTCCGGATTTTCTTCTTTCACATCTAGACT 566 |||||||||||| ||||||||||| |||||||| Sbjct 675 CGACTCCGGATTCTCTTCTTTCACTTCTAGACT 643 Score = 424 bits (229), Expect = 2e-117 Identities = 249/259 (96%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 566 TCAGACCGTTAAACGTCCCGTCAAGAAGTCATAAACGAGAGCCAAAGAAACAGAGTTTCT 625 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 549 TCAGACCGTTAAACGTCCCGTCGAGAAGTCATAAACGAGAGTCAAAGAAACAGAGTTTCT 490 Query 626 CGGCGTTTCCAACAGCCAAAGATTCATTTTCCGGCCAAAATAACACACCGGAAAAAGCTG 685 ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CGGCGGTTCCAAAAGCAAAAGATTCATTTTCCGGCCAAAATAACACACCGGAAAAAGCTG 430 Query 686 ATTTTTACTACAAAAAACCACATTTCGGCGGATCAAGAAGAGCCTCGCCAGAAACCATAA 745 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 429 ATTTCTACTACAAAAAAACACATTTCGGCGGATCAAGAAGAGCCTCGCCAGAAACCATAA 370 Query 746 GCTTGGATCCAAATTCCTTCAGAAGAATGGATGATTACGGACCAAGCTCTCCTGCATCTT 805 |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 369 GCTTGGATCCGAATTCCTTCAGAAGAATGGATGACTACGGACCAAGCTCCCCTGCATCTT 310 Query 806 CCCCTGTTTCTTCCTTCAT 824 ||||||||||||||||||| Sbjct 309 CCCCTGTTTCTTCCTTCAT 291 Score = 291 bits (157), Expect = 2e-77 Identities = 183/195 (94%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 949 GAGATAAACTCAGATCGATTCGATCGTTACAGAGAAGAaggaggaggaggaggaggagga 1008 ||||||||||||||||||||||| || |||||||||| | ||||||||||||||||||| Sbjct 284 GAGATAAACTCAGATCGATTCGACCGATACAGAGAAG-A--AGGAGGAGGAGGAGGAGGA 228 Query 1009 AATTCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCAAAAGAGAGATCTCAACGA 1068 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || Sbjct 227 AATTCAGATTCAAACGACATGGATGAAGCAATAGCTTGGGCTAAAGAAAGATCTCAAAGA 168 Query 1069 CCAGAAGCAAAACAAATagaagaagacgtaatcgattcaagaagaagtgaagaagaaccc 1128 ||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 167 CCAGAAGCAAAGCAAACAGAAGAAGATGTAATCGATTCGAGAAGAAGTGAAGAAGAACCC 108 Query 1129 aaatcagaagaagag 1143 ||||||||||||||| Sbjct 107 AAATCAGAAGAAGAG 93 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81224481810 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5