BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473256 Length=2977 Score E Sequences producing significant alignments: (Bits) Value AT1G30330.2 | Symbols: ARF6 | auxin response factor 6 | chr1:10... 3134 0.0 > AT1G30330.2 | Symbols: ARF6 | auxin response factor 6 | chr1:10685822-10690838 REVERSE LENGTH=3827 Length=3827 Score = 3134 bits (1697), Expect = 0.0 Identities = 1892/1986 (95%), Gaps = 14/1986 (1%) Strand=Plus/Plus Query 1 ATGAGATTATCTTCAGCTGGGTTTAATCCTCAACCTCATGAAGTTACAGGAGAGAAAAGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 ATGAGATTATCTTCAGCTGGGTTTAATCCTCAACCTCATGAAGTTACAGGAGAGAAAAGA 776 Query 61 GTTCTTAATTCTGAGCTCTGGCATGCTTGTGCTGGTCCTCTTGTCTCACTACCTCCTGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GTTCTTAATTCTGAGCTCTGGCATGCTTGTGCTGGTCCTCTTGTCTCACTACCTCCTGTT 836 Query 121 GGAAGCAGAGTTGTGTATTTCCCTCAAGGTCACAGTGAACAGGTTGCTGCTTCGACTAAC 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 837 GGAAGCAGAGTTGTGTATTTTCCTCAAGGTCACAGTGAACAGGTTGCTGCTTCGACCAAC 896 Query 181 AAAGAAGTAGATGCTCATATACCAAATTACCCGAGTTTGCATCCGCAGCTTATCTGTCAG 240 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 897 AAAGAAGTAGATGCTCATATACCAAATTATCCGAGCTTGCATCCGCAGCTTATCTGTCAG 956 Query 241 CTTCACAATGTCACAATGCATGCTGATGTGGAGACTGATGAAGTCTATGCACAGATGACT 300 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 CTTCATAATGTTACAATGCATGCTGATGTGGAGACTGATGAAGTCTATGCACAGATGACT 1016 Query 301 TTGCAACCGTTGAATGCGCAAGAGCAAAAAGATCCCTACCTTCCGGCAGAATTAGGTGTC 360 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| Sbjct 1017 TTGCAACCGTTGAATGCGCAAGAGCAAAAAGATCCTTACCTTCCCGCGGAATTAGGTGTC 1076 Query 361 CCGAGTAGACAGCCTACAAACTATTTCTGTAAAACTCTGACTGCTAGTGATACAAGCACT 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 CCAAGTAGACAGCCTACAAACTATTTCTGTAAAACTCTGACTGCTAGTGATACAAGCACT 1136 Query 421 CATGGAGGTTTCTCTGTACCTCGTCGAGCTGCTGAGAAAGTTTTCCCTCCCTTGGACTAC 480 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1137 CACGGAGGTTTTTCTGTACCTCGCCGAGCTGCTGAGAAAGTTTTCCCTCCCTTGGATTAC 1196 Query 481 TCGCAGCAGCCTCCAGCTCAAGAGTTAATGGCGAGGGATCTGCATGATAATGAATGGAAG 540 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 TCGCAGCAGCCACCAGCTCAAGAGTTAATGGCGAGGGATCTGCATGATAATGAATGGAAG 1256 Query 541 TTCAGGCATATTTTCCGAGGCCAACCAAAGAGACATCTCCTTACTACGGGTTGGAGCGTA 600 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1257 TTCAGGCATATTTTCCGAGGCCAACCAAAGAGACATCTCCTTACCACGGGTTGGAGCGTA 1316 Query 601 TTCGTGAGTGCTAAAAGGCTTGTTGCCGGTGACTCTGTTCTTTTCATCTGGAACGATAAG 660 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1317 TTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGACTCTGTTCTTTTCATCTGGAACGATAAG 1376 Query 661 AATCAATTACTTCTTGGTATAAGACGAGCCAACCGACCGCAAACTGTCATGCCTTCCTCT 720 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1377 AATCAATTACTTCTTGGTATAAGACGAGCCAACCGACCACAAACTGTCATGCCTTCATCT 1436 Query 721 GTTCTGTCAAGTGACAGTATGCATTTAGGCCTTCTCGCTGCAGCAGCTCATGCTGCCGCC 780 ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1437 GTTTTGTCAAGTGACAGTATGCATTTAGGCCTTCTTGCTGCAGCAGCTCATGCTGCCGCT 1496 Query 781 ACTAACAGCCGATTCACCATATTCTATAACCCGAGGGCGAGTCCATCAGAGTTCGTTATA 840 || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1497 ACAAACAGCCGATTCACCATCTTCTATAACCCGAGGGCGAGTCCATCAGAGTTTGTTATA 1556 Query 841 CCCCTGGCTAAGTATGTGAAAGCTGTTTATCACACTCGCGTCTCTGTTGGCATGCGGTTT 900 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1557 CCCCTGGCTAAGTATGTGAAAGCGGTTTATCACACTCGCGTCTCTGTTGGTATGCGGTTT 1616 Query 901 AGGATGCTGTTTGAAACCGAAGAATCAAGTGTTCGTCGGTACATGGGTACAATAACTGGC 960 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1617 AGGATGCTGTTTGAAACTGAAGAATCTAGTGTTCGTCGGTACATGGGTACAATAACTGGC 1676 Query 961 ATTTGTGATCTAGATCCTACTCGTTGGGCTAATTCGCATTGGCGGTCTGTCAAGGTTGGG 1020 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1677 ATTTGTGATCTAGATCCTACTCGTTGGGCTAATTCGCATTGGCGATCTGTCAAGGTTGGG 1736 Query 1021 TGGGACGAGTCTACTGCAGGAGAGAGGCAACCGAGGGTTTCCTTGTGGGAGATTGAGCCT 1080 |||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||| Sbjct 1737 TGGGACGAATCTACTGCAGGAGAGAGACAGCCAAGGGTTTCATTGTGGGAGATTGAGCCT 1796 Query 1081 TTAACAACATTCCCTATGTATCCATCTCCTTTTCCTCTCAGGCTGAAACGTCCGTGGCCT 1140 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1797 TTAACAACATTCCCTATGTATCCATCTCCTTTTCCTCTCAGGCTTAAACGGCCGTGGCCT 1856 Query 1141 CCTGGTCTCCCATCTTTCCATGGCCTTAAAGAAGATGACATGGGTATGAGTATGAGTTCG 1200 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1857 CCTGGTCTCCCATCTTTCCATGGCCTTAAAGAAGATGATATGGGTATGAGTATGAGTTCA 1916 Query 1201 CCGCTTATGTGGGATCGAGGACTCCAGTCTCTAAACTTTCAAGGTATGGGAGGAAACCCG 1260 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 1917 CCGCTTATGTGGGATCGAGGACTCCAATCTCTAAACTTTCAAGGTATGGGAGTAAACCCG 1976 Query 1261 TGGATGCAGCCAAGACTTGATTCTTCGGGTTTGCTTGGTATGCAAAACGATGTGTACCAA 1320 ||||||||||| ||||||||| | ||||| ||||||||||||||||| |||||||||||| Sbjct 1977 TGGATGCAGCCGAGACTTGATACGTCGGGCTTGCTTGGTATGCAAAATGATGTGTACCAA 2036 Query 1321 GCAATGGCTGCAGCTGCCCTTCAAGACATGAGAGGCATTGATCCCGCAAAAGCTGCTGCT 1380 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2037 GCAATGGCTGCAGCTGCCCTTCAAGACATGAGAGGCATTGATCCTGCAAAAGCTGCTGCT 2096 Query 1381 TCACTTCTTCAGTTCCAAAATTCTTCAGGATTCTCAATGCAATCTCCGTCCTTAGTGCAG 1440 ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| Sbjct 2097 TCACTTCTTCAGTTCCAAAATTCGCCGGGGTTCTCAATGCAATCTCCGTCCTTAGTGCAG 2156 Query 1441 CCGCAAATGCTgcagcagcaactctctcagcagcagcagcaacaactctct-cagcagca 1499 ||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct 2157 CCGCAGATGCTGCAGCAGCAACTCTCTCAGCAGCAGCAACAACT-CTCTCAGCAGCAGCA 2215 Query 1500 gcagca--a-ct-ctctcagcagcagcagcagcagcagcaactctctcagcagcagcagc 1555 |||||| | | ||||| || ||||||||||| |||| ||||||| |||||||||| Sbjct 2216 GCAGCAGCAACAGCTCTCC-CAACAGCAGCAGCAACAGC---TCTCTCAACAGCAGCAGC 2271 Query 1556 aacaacagctctctcagcagcagcaacaacagctctctcagcagcagcagcaacatgcat 1615 | || ||||||||| |||||||| ||||| ||||||||||||||||||||||| || | Sbjct 2272 AGCA---GCTCTCTCAACAGCAGCAGCAACAACTCTCTCAGCAGCAGCAGCAACAGGCGT 2328 Query 1616 atctcagcGTTCCTGAAACCCACCAGCCTCAATCTCAGGCTCAATCACAGTCAAACAATC 1675 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2329 ATCTTGGCGTTCCTGAAACCCACCAGCCTCAGTCTCAGGCTCAATCACAGTCAAACAATC 2388 Query 1676 ATCTTTCTCAGCAGCAGCAGCAAGTAGAGAATAATCACAATCCGTCTGCGTCCAGTGCTG 1735 ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| Sbjct 2389 ATCTTTCTCAGCAGCAGCAGCAAGTAGTGGATAATCATAATCCGTCTGCGTCCAGTGCTG 2448 Query 1736 CTGTTGTTTCCGCTATGTCTCAATTTGGTTCTGCTTCTCAGTCCAACACGTCACCACTCC 1795 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2449 CTGTTGTTTCCGCTATGTCTCAATTTGGTTCTGCTTCTCAGCCCAACACGTCACCACTCC 2508 Query 1796 AGTCCATGACTTCTCTGTGTCATCAACAAAGCTTCTCCGACACCAACGGAGGAAACAATC 1855 |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 2509 AGTCCATGACCTCTCTGTGTCATCAGCAAAGCTTCTCCGATACCAACGGAGGAAACAATC 2568 Query 1856 CTATTTCTCCGCTTCACACTCTTCTCAGTAACTTCTCTCAAGACGAGTCTTCTCAACTGC 1915 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2569 CTATTTCTCCACTTCACACTCTTCTCAGTAACTTCTCTCAAGACGAATCTTCTCAACTGC 2628 Query 1916 TCAACCTCACTAGAACAAACTCTGCAATGACTTCATCCGGTTGGCCATCAAAGCGTCCTG 1975 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2629 TCCACCTCACTAGAACAAACTCTGCAATGACTTCATCCGGTTGGCCATCAAAGCGTCCTG 2688 Query 1976 CATGTT 1981 || ||| Sbjct 2689 CA-GTT 2693 Score = 1659 bits (898), Expect = 0.0 Identities = 965/996 (97%), Gaps = 9/996 (1%) Strand=Plus/Plus Query 1984 ATCGAGCAAGAAGGAAGCGCCTCAGACCCGCATAGCCATCTTCTCTTTGGAGTCAACATA 2043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2832 ATCGAGCAAGAAGGAAGCGCCTCAGACCCGCATAGCCATCTTCTCTTTGGAGTCAATATA 2891 Query 2044 GATTCATCTTCTCTTTTGATGCCGAACGGAATGTCAAACCTTAGAAGCATTGGCATTGAA 2103 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2892 GATTCATCTTCTCTTTTGATGCCGAACGGAATGTCAAACCTTAGAAGCATTGGTATTGAA 2951 Query 2104 GGTGGTGACTCCACGACTTTACCCTTCACATCATCTAATTTCAACAACGATTTCTCGGGT 2163 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2952 GGTGGTGACTCCACGACTTTACCCTTCACATCATCTAATTTCAACAATGATTTCTCGGGT 3011 Query 2164 AATCTTGCAATGACAACGCCTTCTAGTTGTATAGATGAATCGGGTTTTCTACAATCCTCA 2223 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 3012 AATCTTGCAATGACAACACCTTCTAGTTGCATAGATGAATCGGGTTTTCTACAATCCTCA 3071 Query 2224 GAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAGGTGTACAAGTCAGGG 2283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3072 GAAAACCTCGGTTCCGAGAACCCACAATCTAACACCTTTGTGAAGGTGTACAAGTCAGGG 3131 Query 2284 TCTTTTGGAAGATCGTTAGATATATCAAAATTTAGCAGCTACCACGAGCTGCGAAGCGAG 2343 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3132 TCTTTTGGAAGATCGTTAGATATATCAAAGTTTAGCAGCTACCACGAGCTGCGAAGCGAG 3191 Query 2344 CTTGCTCGCATGTTTGGCCTTGAAGGCCAATTAGAAGACCCTGTGAGATCAGGCTGGCAG 2403 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3192 CTTGCTCGCATGTTTGGCCTCGAAGGCCAATTAGAAGACCCTGTGAGATCAGGCTGGCAG 3251 Query 2404 CTTGTATTTGTTGACCGAGAGAACGACGTTCTTCTCCTCGGCGATGACCCTTGGCCGGCG 2463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 3252 CTTGTATTTGTTGACCGAGAGAACGACGTTCTTCTCCTCGGCGATGACCCTTGGCCGGAG 3311 Query 2464 TTTGTGAGCAGCGTGTGGTGCATTAAGATACTGTCACCACAAGAAGTGCAGCAAATGGGT 2523 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3312 TTTGTGAGCAGCGTGTGGTGCATTAAGATACTGTCACCACAAGAAGTGCAACAAATGGGA 3371 Query 2524 AAAAGAGGCCTTGAGCTTCTCAATTCCGCGCCATCTTCCAACAATGTCGATAAGCTCCCG 2583 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3372 AAAAGAGGCCTTGAGCTTCTCAACTCCGCGCCATCTTCCAACAATGTCGATAAGCTCCCG 3431 Query 2584 AGCAACGGGAACTGTGATGACTTTGGGAACCGGTCAGACCCGAGGAATCTCGGTAACGGT 2643 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3432 AGCAACGGGAACTGTGACGACTTTGGGAACCGGTCAGACCCGAGGAATCTCGGTAACGGT 3491 Query 2644 ATCGCATCAGTTGGGGGTTCGTTCAACTACTAGAAGTAGAAGGAAACC-CCCATTTTTAT 2702 |||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||| Sbjct 3492 ATCGCATCAGTTGGGGGTTCATTCAACTACTAGAAGTAGATGGAAACCTCCC-TTTTTAT 3550 Query 2703 TCAAGTTAAGTTTCAATCTTATAAATTAGTAGTGAGATCCTCTTAGTTTAATTACTAGCA 2762 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3551 TCAAGTTAAGTTTCAATCTTATAAATTAGTAGTGAGATCATCTTAGTTTAATTACTAGCA 3610 Query 2763 AAA-TCTCTCTTTATTACTTATTAAAAAAGGGGAGATATGCCTTTGCCTTTG-TGGAAAC 2820 ||| |||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||| Sbjct 3611 AAAATCTCTCTTTATTACTTAT-AAAAAAGGG-AGATTTGCCTTTGCCTTTGATGGAAAC 3668 Query 2821 AAAAAACTATATAATCCCTCTGTCGACTCGTAATACTGTAATTATAAGAtcttttggtct 2880 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3669 AAAAA-CTATATAATCCCTCTGTCGACTCGTAATACTGTAATTATAAGATCTTTTGGTCT 3727 Query 2881 ttttcttatatgaatattttttactcaacttttatatatgtcattttctttactcacttc 2940 ||||||||||||||||||||| ||| |||| | |||||||||| |||| ||||||| ||| Sbjct 3728 TTTTCTTATATGAATATTTTT-ACTGAACTCT-ATATATGTCACTTTCCTTACTCATTTC 3785 Query 2941 ttcAATCAATATGATAGTGAAGTGTTATTTTGGAGT 2976 |||||||||||||||||||||| ||||||||||||| Sbjct 3786 TTCAATCAATATGATAGTGAAGGGTTATTTTGGAGT 3821 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 147992481850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5