BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473259 Length=2563 Score E Sequences producing significant alignments: (Bits) Value AT1G30360.1 | Symbols: ERD4 | Early-responsive to dehydration s... 3945 0.0 > AT1G30360.1 | Symbols: ERD4 | Early-responsive to dehydration stress protein (ERD4) | chr1:10715665-10718997 FORWARD LENGTH=2600 Length=2600 Score = 3945 bits (2136), Expect = 0.0 Identities = 2449/2595 (94%), Gaps = 41/2595 (2%) Strand=Plus/Plus Query 1 AACAATAGAAAAATATCTT-CTTTCTTTTTCTGTGAATACATCTATAAAGT-ACAAAAGa 58 ||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||| Sbjct 12 AACAATAGAAAAATATCTTCCTTTCTTTTTCTGTGAATACACCAATAAAGTGACAAAAG- 70 Query 59 aaaaaaGCCTGTCCTCTCTCACCTGTAAAAATTACCAGAAG--AATCTCAAACGGTTTAC 116 |||||||||||| |||||||||||| |||||||||||| ||| | |||| | |||| Sbjct 71 -AAAAAGCCTGTCTTCTCTCACCTGT---AATTACCAGAAGACAATAT-AAACTG-TTAC 124 Query 117 TTTCCTTCTTTTGTT-TTCACCTTTAAAAACGGCTAC-TT---G-A---GAG--GATTTA 165 ||||||||||||||| | | ||||||||||||||||| || | | ||| |||||| Sbjct 125 TTTCCTTCTTTTGTTGTACCCCTTTAAAAACGGCTACTTTAGAGAACTTGAGAAGATTTA 184 Query 166 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCAAAACCCAGATGGAGTTTGGATCTTT 225 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 185 GAAAGAAACAGAGAGCTTGAGAGATTCCTCTGGCTAAACCCAGATGGAGTTTGGATCTTT 244 Query 226 TCTTGTGTCCTTAGGGACATCTTTTGTTGTCTTCGTCGTTCTCATGCTTCTCTTCACATG 285 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || Sbjct 245 TCTTGTGTCCTTAGGGACATCTTTTGTTATCTTCGTCATTCTCATGCTTCTCTTCACCTG 304 Query 286 GCTTTCTCGCAAATCCGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGTT 345 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 305 GCTTTCTCGCAAATCTGGAAATGCTCCCATTTATTACCCGAATCGGATCCTTAAAGGGCT 364 Query 346 GGAGCCATGGGAAGGTACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 405 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GGAGCCATGGGAAGGCACCTCCTTGACTCGAAACCCTTTTGCTTGGATGCGTGAAGCTTT 424 Query 406 GACTTCTTCTGAGCAAGACGTTGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 465 |||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 425 GACTTCCTCTGAACAAGATGTCGTTAACTTATCCGGCGTCGATACTGCTGTCCACTTTGT 484 Query 466 CTTCTTGACCACTGTTCTGGGGATATTTGCTTGTTCCGGTCTTCTTCTCTTACCGACTCT 525 |||||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||| Sbjct 485 CTTCTTGAGCACTGTTCTGGGGATATTTGCTTGTTCCAGTCTTCTTCTCCTACCAACTCT 544 Query 526 ACTGCCTCTAGCCGCTACAGACAACAACTTAAAGAACAC-AA-AA----ACAGATACCAC 579 |||||||||||||||||||||||||||| |||||||||| || || ||||||||||| Sbjct 545 ACTGCCTCTAGCCGCTACAGACAACAACATAAAGAACACAAAGAATGCGACAGATACCAC 604 Query 580 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACaaaaaaaaG 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 AAGCAAAGGAACTTTTAGCCAACTTGATAATCTATCAATGGCTAACATCACAAAAAAAAG 664 Query 640 TCCGAGGCTGTGGGCGTTCCTAGGAGCGGTTTACTGGATATCTTTGGTCACATATTTCTT 699 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 665 TTCGAGGCTGTGGGCGTTCCTAGGAGCTGTTTACTGGATATCTTTGGTCACATATTTCTT 724 Query 700 CTTGTGGAAAGCTTATAAGCATGTCTCTACGTTGAGGGCACAAGCTCTGATGTCTGCTGA 759 |||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||| Sbjct 725 CTTGTGGAAAGCTTATAAGCATGTCTCTTCATTGAGAGCTCAAGCTCTGATGTCTGCTGA 784 Query 760 TGTCAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTTCACCACCTGACGGGCA 819 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 785 TGTAAAACCCGAGCAATTCGCTATTCTTGTTAGGGATATGCCTGCACCACCTGACGGGCA 844 Query 820 GACACAGAAAGAGTTCATCGATTCTTATTTCAGAGAAATATACCCCGAGACATTCTACAG 879 ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 845 GACACAGAAAGAGTTTATTGATTCTTATTTCAGAGAAATATACCCTGAGACATTCTACAG 904 Query 880 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAGATATGGGGAAAGTTGGAAGGTTA 939 |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct 905 ATCGCTTGTCGCAACAGAAAACAGCAAGGTTAATAAAATATGGGAAAAATTGGAAGGTTA 964 Query 940 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATACTT-GCAGCAACTAATAACCGACCCACGA 998 ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 965 CAAGAAGAAGCTTGCGCGAGCAGAAGCAATA-TTAGCAGCAACTAATAACCGTCCCACGA 1023 Query 999 ACAAAACCGGCTTGTGTGGGCTAGTCGGTAAACAAGTTGACAGCATTGAGTATTACACCG 1058 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1024 ACAAAACCGGCTTCTGTGGGCTAGTCGGTAAACAAGTAGACAGCATTGAGTATTACACTG 1083 Query 1059 AGCTAATCAACGAGTCTGTAGCCAATCTAGAAACAGAGCAGAAAGCGGTTCTTGCCGAGA 1118 ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct 1084 AGCTAATCAACGAGTCTGTAGCCAAACTGGAAACAGAGCAGAAAGCGGTTCTTGCTGAGA 1143 Query 1119 AGCAGCAAACCGCGGCAGTGGTCTTCTTCACAACCCGGGTTGCCGCCGCATCAGCCGCTC 1178 ||||||||||||| |||||||| |||||||||||| ||||||| || |||||||| |||| Sbjct 1144 AGCAGCAAACCGCAGCAGTGGTTTTCTTCACAACCAGGGTTGCTGCTGCATCAGCAGCTC 1203 Query 1179 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCCGAGCCTCGGG 1238 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1204 AGTCTCTGCACTGCCAGATGGTTGATAAATGGACTGTGACCGAAGCTCCTGAGCCACGGC 1263 Query 1239 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1264 AGCTCCTATGGCAGAATCTCAACATCAAGCTCTTCAGCAGAATAATCCGGCAATACTTCA 1323 Query 1299 TCTACTTCTTTGTTGCTCTGACCATTCTGTTTTATATGATCCCAATCGCGTTCGTCTCTG 1358 |||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1324 TCTACTTCTTTGTTGCAGTGACCATTCTGTTTTACATGATACCAATCGCGTTCGTCTCTG 1383 Query 1359 CAATCACCACTCTTGAGAATCTTCAGAAGATTATCCCGTTCATAAAGCCGATTGTGGAGA 1418 | |||||||||||| |||||||||||| |||||| ||||||||||||||| ||||||||| Sbjct 1384 CCATCACCACTCTTAAGAATCTTCAGAGGATTATTCCGTTCATAAAGCCGGTTGTGGAGA 1443 Query 1419 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAAATTGCGCTCCTCGTTTTCT 1478 |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| Sbjct 1444 TAACCGCCATAAGAACCGTTTTGGAGTCTTTCCTTCCTCAGATTGCGCTCATTGTTTTCT 1503 Query 1479 TGGCGATGTTGCCTAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGAATTCCGTCGCAGA 1538 |||| |||||||| |||||||||||||||||||||||||||||||| ||||| || |||| Sbjct 1504 TGGCCATGTTGCCGAAGCTTCTCTTGTTTCTCTCCAAAGCCGAGGGGATTCCTTCACAGA 1563 Query 1539 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCAGTCTTTAATGTCTTCA 1598 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1564 GCCATGCCATTAGGGCTGCTTCAGGGAAGTACTTTTACTTCTCGGTCTTTAATGTCTTCA 1623 Query 1599 TTGGTGTTACCCTTGCGGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1658 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1624 TTGGTGTTACCCTTGCTGGGACTTTGTTCAACACAGTGAAGGATATCGCGAAAAATCCCA 1683 Query 1659 AACTCGACATGGTCATTAATCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCT 1718 ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1684 AACTCGACATGATTATTAACCTTTTGGCTACTAGCCTCCCTAAGAGCGCAACTTTCTTCC 1743 Query 1719 TGACCTACGTTTCTCTCAAGTTCTTTATCGGTTATGGCCTTGAACTGTCTCGGATCATAC 1778 ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1744 TGACCTACGTTGCTCTCAAGTTCTTTATCGGTTATGGCCTTGAGCTGTCTCGGATCATAC 1803 Query 1779 CTTTGATAATCTTCCACCTGAAAAAGAAGTATGTCTGCAAAACCGAAGCGGAGGTCAAAG 1838 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1804 CTTTGATAATCTTCCACCTGAAAAAGAAGTATCTCTGCAAAACCGAAGCGGAGGTCAAAG 1863 Query 1839 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACCTGCTCATCC 1898 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1864 AAGCTTGGTACCCGGGAGACTTAAGCTATGCGACTAGGGTTCCCGGAGACATGCTCATCC 1923 Query 1899 TCACAATCACGTTCTGCTATTCTGTAATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1958 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1924 TCACAATCACGTTCTGCTATTCAGTCATTGCTCCTCTTATCCTCATATTCGGCATCACCT 1983 Query 1959 ACTTCGGTTTAGGCTGGCTGGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2018 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1984 ACTTTGGTTTAGGCTGGCTAGTCCTCAGGAATCAGGCGTTGAAAGTGTACGTTCCATCAT 2043 Query 2019 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGGATACTAGCAGCGTTGTTTC 2078 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2044 ACGAGAGCTATGGAAGAATGTGGCCGCATATTCACCAGCGCATACTAGCAGCGTTGTTTC 2103 Query 2079 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTCG 2138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2104 TATTCCAAGTGGTAATGTTTGGCTACTTAGGAGCCAAGACATTCTTCTACACGGCCCTTG 2163 Query 2139 TGATCCCTCTCATCATCACCTCTCTCATCTTCGGTTACGTGTGCCGCCAGAAATTCTACG 2198 ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| Sbjct 2164 TGATCCCTCTCATTATCACCTCTCTCATCTTCGGATATGTGTGCCGCCAGAAATTCTACG 2223 Query 2199 GAGGGTTCAAACACACAGCTCTGGAGGTGGCTTGCCGTGAGCTGAAGCAGAGTCCGGACC 2258 |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 2224 GAGGGTTCGAACACACAGCTCTCGAGGTAGCTTGCCGTGAGCTGAAGCAGAGTCCAGACC 2283 Query 2259 TCGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAAGCAGAAGAAC 2318 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2284 TAGAGGAGATTTTCAGAGCATACATTCCGCATAGCTTGAGCTCTCACAAACCAGAAGAAC 2343 Query 2319 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAATGCAATAGGAGGCGTTTAAA 2378 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 2344 ACGAGTTCAAAGGCGCAATGTCTCGTTATCAAGATTTCAACGCAATAGCAGGCGTTTAAA 2403 Query 2379 GTTTGAATCCAATCCC-AA-TTATCTCATAGAtttgttttgttggttttttagaagctgt 2436 ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | Sbjct 2404 ATTTGAATCCAATCCCCAAATTATCTCATAGATTTGTTTTGCTGGTTTTTTAGAAGCTTT 2463 Query 2437 tattgttgtgtgtgtgaattttaaggtttgtttaGGATTCTTCTTTGTATGTGTTCT-TG 2495 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 2464 TATTGTTATGTGTGTGAATTTTAGGGTTTGTTTAGGATTCTTCTTTGTATGTGTTCCATG 2523 Query 2496 G--GTTGT---T-GTAACTTTGTAAGCTACTTTTAAATATCAACTTGATTTTTCATCAGT 2549 | ||||| | |||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 2524 GTTGTTGTAACTTGTAACTTTGTAAGCTACTTTTAAACATCAACTTGATTTTTCATCATT 2583 Query 2550 A-TGATTCTTCTACT 2563 | | ||||||||||| Sbjct 2584 AAT-ATTCTTCTACT 2597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127223367448 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5