BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473278 Length=945 Score E Sequences producing significant alignments: (Bits) Value AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | ... 1371 0.0 AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4 | ... 311 9e-84 > AT1G30500.2 | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | chr1:10804450-10806319 REVERSE LENGTH=970 Length=970 Score = 1371 bits (742), Expect = 0.0 Identities = 863/920 (94%), Gaps = 13/920 (1%) Strand=Plus/Plus Query 32 TCGTCATTGAAAATTGCAGAGAGAATTCTCCTTCGGACATTAAGCTCATGAGTCATGACT 91 |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 58 TCGTCAGAGAAAATTGCAGAGAGAATTCTGCTTCGGACATTAAGCTCATGAGTCATGACT 117 Query 92 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGAT 177 Query 152 TCTCATTTCCAACCACCAATTCCTCCTGGAAGAAATTATGAATCCATAGCTACAAGTTTA 211 |||||||||||||||||||| ||| ||| ||||||||||||||| || | |||||||||| Sbjct 178 TCTCATTTCCAACCACCAATCCCTTCTGCAAGAAATTATGAATCAATTGTTACAAGTTTA 237 Query 212 GTCTACTCGGAACCGGTTCCTCAAAAACTGAA-GGCACCTGGACAATATCCATATCCAGA 270 |||||||| || |||| || | ||| | | ||||||||||||||||||||||||||| Sbjct 238 GTCTACTCAGACCCGGGGACT-ACAAATTCCATGGCACCTGGACAATATCCATATCCAGA 296 Query 271 TCCTTACTACAGAAGCATCTTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 330 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TCCTTACTACAGAAGCATATTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACA 356 Query 331 GTTGATGGGAATGCAGCAACAAGGTGTTCCTTTACCATCTGATGCAGTTGAGGAACCTGT 390 |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 357 GTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCATCTGATGCAGTCGAGGAACCTGT 416 Query 391 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGGCAATCTAGAGCAAGACT 450 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 417 TTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGACAATCAAGAGCAAGACT 476 Query 451 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCATATTTACATGAATCACGGCATTT 510 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 477 TGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGCCGTATTTGCATGAATCTCGGCATTT 536 Query 511 GCATGCGATAAGACGACCAAGAGGATGTGGCGGTCGGTTTCTAAATGCCAAGAAGGACGG 570 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 537 GCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGGTTTCTAAATGCCAAGAAGGA-GG 595 Query 571 C-GAGCATCACGAAGACAGTACTCATGAAGAAACTTCCAACCTCAGCTCTGATAAATCCG 629 ||||||||||||||||||| ||||||||||| |||||||| ||| ||| |||||||| Sbjct 596 ATGAGCATCACGAAGACAGTAGTCATGAAGAAAAATCCAACCTTAGCGCTGGTAAATCCG 655 Query 630 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCATCCAAGTAGCTTTGTTGTATTTT 689 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 656 CCATGGCTGCTTCTAGTGGTACATCTTGAGAAGGTCCTACAAGTAGCTTTGTTGTATTTT 715 Query 690 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTT-AGTGTATGATATATACAAATCTTTGT 748 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 716 GGCTCTGTTTGGTCTCAGATCATCTATGTCTTTTAGTGTATGATATATACAAATCTTTGT 775 Query 749 AGAAAGGTATAGATAGGTTCTTGGGA-GCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 807 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 776 ATAAAGGTATAGATAGGTTCTTGGGAAGCAATTAGGTAAACGTGAAGTGGGTTTTAGACT 835 Query 808 TGTGATTATTAAATAAAACCCACTGAGGAAGAAAGG-AAATAAATAAATGTC-ATAATGT 865 ||||||||||||||||||||||| |||||| ||||| |||||||||| |||| || |||| Sbjct 836 TGTGATTATTAAATAAAACCCACCGAGGAA-AAAGGGAAATAAATAA-TGTCCATGATGT 893 Query 866 TTAGTTAAATAGTACAATGCTACTTATATTGTTTTGTTGTAAGAAATTTTGGTAATAAAA 925 ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 894 TTAGTTAAATA---CAATGCTACTGATATTGTTTTGTTATAAGAAATTTTGGTAATAAAA 950 Query 926 CAAAAAATGGAAGAATCCAC 945 | || ||||||||||||||| Sbjct 951 CGAAGAATGGAAGAATCCAC 970 > AT2G34720.1 | Symbols: NF-YA4 | nuclear factor Y, subunit A4 | chr2:14649767-14651627 REVERSE LENGTH=958 Length=958 Score = 311 bits (168), Expect = 9e-84 Identities = 401/508 (79%), Gaps = 38/508 (7%) Strand=Plus/Plus Query 76 CTCATGAGTCATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAA 135 ||||||| |||||||||||||| | |||||||| |||||||||| || |||||||| ||| Sbjct 101 CTCATGAATCATGACTTCTTCAGTACATGAGCTCTCTGATAACAATGAAAGTCATGCGAA 160 Query 136 GCAAGAACAG-AGAGATTCTCATTTCCAACCACCA-ATTCCTCCTGGAAGAAATTATGAA 193 | |||||| | |||||| || || |||| || ||||| | ||| ||| || ||| Sbjct 161 GAAAGAAC-GTCCAGATTCCCAAACCCGACCA-CAGGTTCCTTCAGGACGAAGTTCGGAA 218 Query 194 TCCATAGCTAC-AAGTTTAGTCTACTCGGAACCGGTTCCTCAAAAACTGAAGGCACCTGG 252 || || | ||| || | | |||||||| | | | || | | | ||||| ||| Sbjct 219 TCTATTGATACAAACTCT-GTCTACTCAG-A---G--CC-C----A-T---GGCACATGG 262 Query 253 ACAATATCCATATCCAGATCCTTACTACAGAAGCATCTTTGCAC--C--GC----C-TCC 303 | ||| || |||||||||||||||||||||||| ||||||||| | || | ||| Sbjct 263 ATTATACCCGTATCCAGATCCTTACTACAGAAGCGTCTTTGCACAGCAAGCGTATCTTCC 322 Query 304 ACAACCGTATACC-GGGGTAC-ATCTACAGTTGATGGGAATGCAGCAACAAGGTGTTCCT 361 ||| || ||| || ||||| | || | ||||| |||||||||||||| | ||| ||||| Sbjct 323 ACATCCCTAT-CCTGGGGTCCAAT-TGCAGTTAATGGGAATGCAGCAGCCAGGAGTTCCA 380 Query 362 TTACCATCTGATGCAGTTGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCACGGTATA 421 || | || ||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 381 TTGCAATGTGATGCAGTCGAGGAACCTGTTTTTGTTAACGCAAAGCAATACCATGGTATA 440 Query 422 CTAAGGCGCAGGCAATCTAGAGCAAGACTTGAGTCTCAGAA-TAAAGTCATCAA-GTCAC 479 || |||||||||||||| | |||| ||||||| | | ||| || || |||||| | || Sbjct 441 CTCAGGCGCAGGCAATCCCGGGCAAAACTTGAGGCAC-GAAATAGAGCCATCAAAG-CAA 498 Query 480 GTAAGCCATATTTACATGAATCACGGCATTTGCATGCGATAAGACGACCAAGAGGATGTG 539 |||||||| | |||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 499 AAAAGCCATACATGCATGAATCTCGGCATTTACATGCGATAAGACGGCCAAGAGGATGTG 558 Query 540 GCGGTCGGTTTCTAAATGCCAAGAAGGA 567 | || |||||||| |||||||||||||| Sbjct 559 GTGGCCGGTTTCTCAATGCCAAGAAGGA 586 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46215415240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5