BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473294 Length=1205 Score E Sequences producing significant alignments: (Bits) Value AT1G30630.1 | Symbols: | Coatomer epsilon subunit | chr1:10858... 1875 0.0 AT2G34840.1 | Symbols: | Coatomer epsilon subunit | chr2:14702... 944 0.0 > AT1G30630.1 | Symbols: | Coatomer epsilon subunit | chr1:10858298-10860261 REVERSE LENGTH=1215 Length=1215 Score = 1875 bits (1015), Expect = 0.0 Identities = 1146/1208 (95%), Gaps = 13/1208 (1%) Strand=Plus/Plus Query 1 ACACTTCAGTTTTCTCTATTTTGGAGTTAGACACGGATCTGTGAGATCTAGAGgaagaag 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9 ACACTTCAGTTTTCTTTATTTTGGAGTTAGACACGGATCTGTGAGATCTAGAAGAAGAAG 68 Query 61 aagaagaagaagCTGAGACAATGGCATCCATGGCAGGACCAGATCATCTCTTTAACCTGA 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| Sbjct 69 AAGAAGAAGAAGCTAAGACAATGGCATCCATGGCAGGACCAGATCATCTCTTCAATTTGA 128 Query 121 GAAACCATTTTTACTTGGGTTCTTACCAAGCGGCGATCAACAACAGCGAGATCCCTAATC 180 |||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||| Sbjct 129 GAAACCATTTCTACTTGGGTGCTTATCAAGCTGCGATCAACAACAGCGAGATCCCTAATC 188 Query 181 TTTCGCAGGAAGATATCGTCGAGCGAGACTGCCTCGTCCATCGCGCTTACATCGCTCTCG 240 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 189 TTTCGCAGGAAGATATCGTCGAGCGAGACTGTCTCGTCCATCGCGCTTACATCGCTCTCG 248 Query 241 GAAGTTATCAGCTTGTCATCAGTGAGATCGATGAAGCGGCTGCTACTCCTCTACAGGCAG 300 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 249 GAAGTTACCAGCTTGTCATCAGTGAGATCGATGAAGCCGCTGCTACTCCTCTACAGGCAG 308 Query 301 TGAAACTCCTTGCTATGTATCTAGCGAGTCCTGGAAATAAGGAATCAACAATTTCGAGCT 360 ||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||| Sbjct 309 TGAAACTCCTTGCTATGTATCTATCGAGTCCTGAAAACAAGGAATCAACCATTTCGAGCT 368 Query 361 TGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTATTC-GGTTGATTGCT 419 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 369 TGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTATTA-TCAGGTTGATTGCT 427 Query 420 GGTACTATATTCATGCATGAGGAAGACTATAACGAGGCTCTGAAGCACACTCATTCTGGA 479 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 428 GGTACTATATTCATGCATGAGGAAGACTATAATGAGGCTCTGAAGCACACTCATTCTGGA 487 Query 480 GGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAAAGATGCATAGATCAGAT 539 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 488 GGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAAAGATGCACAGATCAGAT 547 Query 540 TATGCAGAGAAACAGCTAAGAGTGATGCAACAGATTGATGAAGACCACACACTCACTCAA 599 | ||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 548 TTTGCGGAGAAACAACTGAGAGTGATGCAACAGATTGATGAAGACCACACACTCACTCAG 607 Query 600 CTCGCGAGCGCGTGGTTGAACCTGGCAGTAGGTGGTTCCAAAATACAGGAAGCTTATCTA 659 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 608 CTCGCGAGCGCGTGGTTGAATCTGGCAGTAGGTGGTTCCAAGATACAGGAAGCTTATCTA 667 Query 660 ATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGTTTGATCTTGAACGGCAAAGCA 719 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 668 ATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGCTTGATCTTGAACGGCAAAGCA 727 Query 720 GTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTCTACTACTTGAAGCACTC 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 728 GTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTCTACTACTTGAAGCACTC 787 Query 780 AACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTAGTTGTATGCAGCCTTCATGTC 839 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 788 AACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTCGTTGTATGCAGTCTTCACGTC 847 Query 840 GGGAAATCATCTTCGCGATACCTAAACCAGCTGAAACTTTCACATCCAGAACACGTCCTT 899 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 848 GGGAAATCATCTTCTCGCTACCTAAACCAGCTGAAACTTTCACATCCAGAACACGTCCTT 907 Query 900 GTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCTCTTCAATCTTTCGCCTGA 959 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 908 GTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCACTTCAATCTTTCGCCTGA 967 Query 960 AGGACCTCAAAATCCATGGAATCAATTTGCGTTATAATCTACCAGCAGAACATCATATTC 1019 || |||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||| Sbjct 968 AGTACCTCAAAGTCCATGGAATCAATTTGCCTTATGATCTACCAGAAGAACATCATATTA 1027 Query 1020 TTACC-AGCCCTGTCTTGAAATTATCATATATGAACAGtttttttttttttCCATCGGAT 1078 ||||| | |||| |||||||||||||||| || ||||||||||| |||| |||| Sbjct 1028 TTACCGA-CCCTATCTTGAAATTATCATAGATAAACAGTTTTTT-------CCATTGGAT 1079 Query 1079 ATGTTGCATTTGAATTTGATTTCTCACTGAAGCTTTTGTTGTCATTGAGTTTCGAATCCA 1138 ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1080 ATGTTGCATTTTACTTTGATTTCTCACTGAAGCTTTTGTTTTCATTGAGTTTCGAATCCA 1139 Query 1139 ACAAAACTAGAGATCTTGTTCCTT-AATATCCAGAATCTCCATAACTGATGAGACAAAAG 1197 ||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1140 ACAGAACTACAGATCTTGTTCCTTGAA-ATCCAGAATCTCCATAACTGATGAGACAAAAG 1198 Query 1198 CCAGACTT 1205 ||||||| Sbjct 1199 GCAGACTT 1206 > AT2G34840.1 | Symbols: | Coatomer epsilon subunit | chr2:14702488-14704353 FORWARD LENGTH=1185 Length=1185 Score = 944 bits (511), Expect = 0.0 Identities = 786/920 (85%), Gaps = 13/920 (1%) Strand=Plus/Plus Query 50 AGAGgaagaagaagaagaagaagCTG-AGACAATGGCATCCAT--G-GCAGGACCAGATC 105 ||| ||||||||||||||||||| | || ||||| || |||| | ||||||||||||| Sbjct 85 AGAAGAAGAAGAAGAAGAAGAAGAAGAAG-CAATGTCAGCCATGGGAGCAGGACCAGATC 143 Query 106 ATCTCTTTAACCTGAGAAACCATTTTTACTTGGGTTCTTACCAAGCGGCGATCAACAACA 165 | ||||| ||||| |||||| |||| || ||||| |||| ||| ||||||||||||||| Sbjct 144 ACCTCTTCAACCTCAGAAACAATTTCTATTTGGGAGCTTATCAAACGGCGATCAACAACA 203 Query 166 GCGAGATC-CCTAATCTTTCGCAGGAAGATATCGTCGAGCGAGACTGCCTCGTCCAT-CG 223 |||||||| || || || |||| |||| | ||| || || ||||| ||||| | | || Sbjct 204 GCGAGATCGCC-AACCTCTCGCCGGAAAACGCCGTGGAACGTGACTGTCTCGT-CTTCCG 261 Query 224 CGCTTACATCGCTCTCGGAAGTTATCAGCTTGTCATCAGTGAGATCGATGAAGCGGCTGC 283 |||||||||| ||||| || ||||||||||| |||||||||||||||||| | || || Sbjct 262 ATCTTACATCGCCCTCGGTAGCTATCAGCTTGTTATCAGTGAGATCGATGAATCAGCCGC 321 Query 284 TACTCCTCTACAGGCAGTGAAACTCCTTGCTATGTATCTAGCGAGTCCTGGAAATAAGGA 343 |||||| ||||| ||||| |||||||| |||||||||||| ||| |||| ||||||||| Sbjct 322 TACTCCACTACAAGCAGTCAAACTCCTCGCTATGTATCTATCGACTCCTCAAAATAAGGA 381 Query 344 ATCAACAATTTCGAGCTTGAGGGAATGGTTGGCAGATCCAACTGTAGGAAACAATGCTAT 403 |||||||||||| ||||||| ||||||||| |||||| |||| |||||||||||| || Sbjct 382 ATCAACAATTTCAAGCTTGAAGGAATGGTTAGCAGATTCAACAATAGGAAACAATGATA- 440 Query 404 TATT-CGGTTGATTGCTGGTACTATATTCATGCATGAGGAAGACTATAACGAGGCTCTGA 462 ||| || ||||||||||||| ||| ||||||||||| ||||| ||||| || || ||| Sbjct 441 CATTACGATTGATTGCTGGTATTATTTTCATGCATGAAGAAGATTATAATGAAACTTTGA 500 Query 463 AGCACACTCATTCTGGAGGAACCATGGATCTGCATGCTTTGAATGTCCAGATATTCATAA 522 |||| |||||| |||||||||| |||||| || |||| |||||||| ||||||||||| | Sbjct 501 AGCATACTCATGCTGGAGGAACTATGGATTTGTATGCCTTGAATGTTCAGATATTCATTA 560 Query 523 AGATGCATAGATCAGATTATGCAGAGAAACAGCTAAGAGTGATGCAACAGATTGATGAAG 582 ||||||||||| |||| ||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 561 AGATGCATAGAGCAGAGTATGCTGAGAAGCAGCTTAGAGTGATGCAACAGATTGATGAAG 620 Query 583 ACCACACACTCACTCAACTCGCGAGCGCGTGGTTGAACCTGGCAGTAGGTGGTTCCAAAA 642 ||||||| ||||||||||| || ||||| ||||||||||||||||| || ||||| || | Sbjct 621 ACCACACTCTCACTCAACTTGCTAGCGCTTGGTTGAACCTGGCAGTGGGCGGTTCGAAGA 680 Query 643 TACAGGAAGCTTATCTAATCTTCCAGGATTTCTCTGAGAAGTACCCAATGACAAGTTTGA 702 |||||||||||||||| || ||| ||||||| ||||||||||||||||||||| | |||| Sbjct 681 TACAGGAAGCTTATCTCATTTTCGAGGATTTTTCTGAGAAGTACCCAATGACATGCTTGA 740 Query 703 TCTTGAACGGCAAAGCAGTTTGCTGCATGCATATGGGTAATTTTGAAGAAGCTGAGACTC 762 ||||||| |||||||| |||||||| ||||| |||||||| || || |||||||| || | Sbjct 741 TCTTGAATGGCAAAGCTGTTTGCTGTATGCAAATGGGTAACTTCGATGAAGCTGAAACAC 800 Query 763 TACTACTTGAAGCACTCAACAAGGATGCTAAAGACCCAGAAACTCTTGCAAACCTAGTTG 822 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct 801 TACTTCTTGAAGCACTCAACAAGGATGCTAAAGATCCAGAAACTCTTGCAAATCTTGTTG 860 Query 823 TATGCAGCCTTCATGTCGGGAAATCATCTTCGCGATACCTAAACCAGCTGAAACTTTCAC 882 | ||||| |||||||||||||| || ||||| || |||||| |||||| |||||||||| Sbjct 861 TGTGCAGTCTTCATGTCGGGAAGTCTTCTTCACGCCACCTAAGCCAGCTAAAACTTTCAC 920 Query 883 ATCCAGAACACGTCCTTGTGAAGCGAGCAGCATCAGCTGAAGATAACTTCGAGAGAGCTC 942 | || |||||| | ||||||||||| | | |||||||||||||||||||||||||||| Sbjct 921 ACCCGGAACACATACTTGTGAAGCGTGTATCATCAGCTGAAGATAACTTCGAGAGAGCAG 980 Query 943 TTCAATCTT-TCGCCTGAAG 961 |||||| | |||||| ||| Sbjct 981 TTCAAT-TGGTCGCCTAAAG 999 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59186442555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5