BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473304 Length=1581 Score E Sequences producing significant alignments: (Bits) Value AT1G30730.1 | Symbols: | FAD-binding Berberine family protein ... 2381 0.0 AT1G30720.1 | Symbols: | FAD-binding Berberine family protein ... 1524 0.0 > AT1G30730.1 | Symbols: | FAD-binding Berberine family protein | chr1:10900854-10902534 FORWARD LENGTH=1681 Length=1681 Score = 2381 bits (1289), Expect = 0.0 Identities = 1482/1576 (94%), Gaps = 10/1576 (1%) Strand=Plus/Plus Query 1 ATGGAAAAATTACTCATAATTTGCCTGTTACTAATCTCAGTTTCAGTTGCAACTTCCCAG 60 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| Sbjct 1 ATGGAAAAATTACTCATAATTTGCATGTTACTAATCTCAGTTTTAGTTGCAACTTCACAG 60 Query 61 TCCCAAACCGATCCGGAGACTTTCCTCCGATGTCTCGTAAGAGAGGGATCAAACCCGCAG 120 || ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||| Sbjct 61 TCGCAAACCGATCCAGAGACATTCCTCCGATGTCTCGTAAGAGAAGGATCAAACCCACAG 120 Query 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTCACCACCGTCCTCCGC 180 Query 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAACCCATCGCCATCATC 240 Query 241 ACCCCTACCACATGGTCACACATTTCTCCGGCGCTAGCTTGCGCACGCTTACTCCCTGTC 300 ||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 241 ACCCCCACCACGTGGTCACACATTTCTCCGGTGCTAGCTTGCGCACGCTTGTTCCCTGTC 300 Query 301 CAAGTCAGAATCCGAAGCGGCGGCCATGATTTCGAAGGACTCTCTTACACCTCCACCGCT 360 || ||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 301 CAGGTCAGGATCCGAAGCGGCGGCCACGACTTCGAAGGACTCTCTTACACCTCCACAGCT 360 Query 361 CCGTTCTTTGTCATCGACTTGCTCAACTTCAAATCCGTTGACGTGAATCTCACGGAAGGA 420 |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 CCGTTCTTCCTCATCGACTTGCTCAACTTCAAATCCGTTGATGTGAATCTCACGGAAGGA 420 Query 421 ACGGCTTGGGTTGATACCGGCGCCACAATCGGAGAGCTTTATTATAAAATCGCTGAGAAA 480 ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct 421 ACGGCTTGGGTTGATACCGGCGCTACACTGGGAGAGCTTTATTATAAAATCGCTGAGAAA 480 Query 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACATATT 540 Query 541 AGCGGCGGAGGGTACGGAACTATGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTGTC 600 ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 541 AGCGGCGGAGGGTACGGGACAATGATGAGAAAGTATGGTTTGTCGGTGGACAACGTTGTC 600 Query 601 GGCTCCAGGATCATCGACTCTAACGGGAATACCTACTTCGATCGAGTGTCCATGGGGGAA 660 ||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||| Sbjct 601 GGCTCCAGGATCATCGACTCTAATGGGAACACCTACTTCGATCGAATGTCGATGGGGGAA 660 Query 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCAAGTTTCGGTATCGTGATGGGATAC 720 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 661 GAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCGAGTTTCGGCATCGTGATGGGATAC 720 Query 721 AAAATCCGGTTGGTTCCGGTGCCGGAGAAAGTAACGGTTTTTAGCGTTGGAAAAACCGTC 780 |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct 721 AAAATCCGGTTGGTTCCGGTTCCGGAGAAAGTTACGGTTTTTAGCGTCGGAAAAACCGTC 780 Query 781 GGAGAAGGAGCCGTTGATCTTATAACGAAGTGGCAGAATTTTTCTCACAGTACGGATCGG 840 ||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||| Sbjct 781 GGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAGAACTTCTCTCATAGTACGGATCGG 840 Query 841 AATTTGTTCGTGAAGCTGACTTTGACTTTGGTCAACGGTACAAAGCCGGGTGAAAAAACT 900 |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 841 AATTTGTTTGTGAAGCTGACTTTGACTTTAGTCAACGGTGCAAAGCCGGGTGAAAAAAAG 900 Query 901 GTTTTAGCGACTTTCATTGGGATGAAT-TTAGGCGGGTTGGATAAGACGTTGAACGTGAT 959 ||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 901 GTTTTAGCGACTTTCATTGGGATGAATCTT-GGCGGGTTTGATAAGACGTTGAACGTGAT 959 Query 960 GAACCGGGATTTCCCAGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GAACCGGGATTTCCCGGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGAT 1019 Query 1020 CGATTCGGTTCTGTTTTGGGCCGGTTTTCCGATTGGCACACCAACTTCTGTGTTACTAAA 1079 |||||||||||||||||||||||||| |||| |||| ||||| ||||||||| ||||||| Sbjct 1020 CGATTCGGTTCTGTTTTGGGCCGGTTATCCGGTTGGTACACCGACTTCTGTGCTACTAAA 1079 Query 1080 CCCTA-GAGTTACAAAAAAGTTGTTCATGAAACGGAAATCAGACTACGTGAAGCGTCCGA 1138 ||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1080 CCCTACG-GTCACAAAAAAGTTGTTCATGAAACGGAAATCGGACTACGTGAAGCGTCCGG 1138 Query 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAGGTTG-ATAAAGTTGAA 1197 |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| Sbjct 1139 TTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAATTGGTTGAG-TTGGAGAAAGTTGAA 1197 Query 1198 ATGAATTGGATTCCATATGGAGGAAGAATGGGGGAGATCCCGAGTTCGAGGACACCTTTC 1257 |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1198 ATGAATTGGAATCCGTATGGAGGAAGAATGGGTGAGATCCCGAGTTCGAGGACACCTTTC 1257 Query 1258 CCACATAGAGAAGGAAATTTGTTCAACATTGAGTATATCATAGACTGGTCGGAAGCTGGA 1317 |||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1258 CCACATAGAGGAGGCAATTTGTTCAACATTGAATATATCATAGACTGGTCAGAAGCTGGA 1317 Query 1318 GATGACGTGGAAAAGGA-TCATTTGGCAAGT-GCAAGTGAGATGTACAAATTCATGACCC 1375 ||| | ||||| ||| | | ||||||| | |||| |||| | || | ||||||||||| Sbjct 1318 GATAATGTGGAGAAGAAAT-ATTTGGCGC-TCGCAAATGAGTTTTATAGATTCATGACCC 1375 Query 1376 CATACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTCGACATAGGGT 1435 | ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| Sbjct 1376 CGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATATTGACATTGGGT 1435 Query 1436 CAGGTGTTAATTCCACGTACCAGGAAGGTAAAATCTATGGGGCGAAATATTTCAAAGACA 1495 || ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 1436 CAAGTGGTAATTCCACGTACGAGGAAGGTAAAATCTATGGGGCTAAATATTTCAAAGACA 1495 Query 1496 ATTTCGAAAGGTTAGTGGATATCAAAACCAAGTTCGATGAAATAAACTTTTGGAGGAACG 1555 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1496 ATTTCGAGAGGTTAGTGGATATCAAAACCAAGTTCGATGAGATAAACTTTTGGAGGAACG 1555 Query 1556 AACAAAGTATTCCGGT 1571 |||||||||||||||| Sbjct 1556 AACAAAGTATTCCGGT 1571 > AT1G30720.1 | Symbols: | FAD-binding Berberine family protein | chr1:10898172-10899912 FORWARD LENGTH=1741 Length=1741 Score = 1524 bits (825), Expect = 0.0 Identities = 1329/1570 (85%), Gaps = 44/1570 (3%) Strand=Plus/Plus Query 29 TACTAATCTCAGTTTCAGTTGCAACTTCCCAGTCCCAAACCGATCCGGAGA-CTTTCCTC 87 |||| |||||| |||||| ||||||| || ||| |||||||| | | |||||||| Sbjct 57 TACTGATCTCAACATCAGTTACAACTTCACAATCCGTGACCGATCC-AATAGCTTTCCTC 115 Query 88 CGATGTCTCGTA-AGAGAGGGATCAAACCC-GCAGGTTTTCATCTCCGACGTCACCTACA 145 |||||||||| | ||| | | | |||| || || | | ||||| ||| | |||| Sbjct 116 CGATGTCTCG-ATAGACAACCAACGGACCCAACAAGTCCT-AACTCCGCCGTTGCTTACA 173 Query 146 TCCCATCAAACTCCTCTTTCACCACCGTCCTCCGCCGCCGCATACCTAACCTCCGTTTCG 205 ||||| ||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||| Sbjct 174 TCCCAACAAACTCTTCTTTCACCACTGTCCTCCGCAGCCGTATACCTAACCTCCGTTTCG 233 Query 206 ACAAACCCACCACCCCAAAACCCATCGCCATCATCAC-CCCTACCACATGGTCACACATT 264 |||||||||| || |||||||||||| || | | | || |||| ||| |||||| | Sbjct 234 ACAAACCCACTACTCCAAAACCCATCTCCGTGGTGGCTGCC-GCCACGTGGACACACA-T 291 Query 265 TC-TCCGGC-GCTAGCTTGCGCACGCTTA-CTCCCTGTCCAAGTCAGAATCCGAAGCGGC 321 | | || | ||| |||||||| | | ||| || |||||||||| ||| |||| || Sbjct 292 ACAAGCTGCTG-TAGGATGCGCACG-TGAGCTCTCTCTCCAAGTCAGGATCAGAAGTGGT 349 Query 322 GGCCATGATTTCGAAGGACTCTCTTACACCTCCACCGCT-CCGTTCTTTG-TCATCGACT 379 ||||| || |||||||||||||||||||| ||||||| | || ||||||| || ||||| Sbjct 350 GGCCACGACTTCGAAGGACTCTCTTACACTTCCACCG-TCCCTTTCTTTGTTC-TCGACA 407 Query 380 TGCTCAACTTCAAATCCGTTGACGTGAATCTCACGGAAG-GAACGGCTTGGGTTGATACC 438 || || || ||| |||| ||||| |||||||| | || ||||||||||||||||| | Sbjct 408 TGTTCGGTTTTAAAACCGTGGACGTAAATCTCACCG-AGAGAACGGCTTGGGTTGATTCT 466 Query 439 GGCGCCACAATCGGAGAGCTTTATTATAAAATCGCTGAGAAAAGCAATGTTCTTGGGTTT 498 || || || ||||||||||||| |||| |||| ||||||| |||||||||||||| ||| Sbjct 467 GGTGCTACCCTCGGAGAGCTTTACTATAGAATCTCTGAGAAGAGCAATGTTCTTGGATTT 526 Query 499 CCGGCGGGTTTGTGTACTACATTGGGCGTTGGTGGACA-TATTAGCGGCGGAGGGTACGG 557 ||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| ||||| Sbjct 527 CCGGCGGGTTTGTCTACCACATTGGGCGTTGGTGGACACT-TTAGCGGCGGAGGATACGG 585 Query 558 -AACTATGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTGTCGGCTCCAGGATCATCG 616 || | ||||||||||||||||||||||||||||||||||| |||||||| ||||| | | Sbjct 586 TAA-TCTGATGAGAAAGTATGGTTTGTCGGTGGATAACGTTTTCGGCTCCGGGATCGTTG 644 Query 617 ACTCTAACGGGAATACCTACTTCGATCGAGTGTCCATGGGGGAAGAGC-TTTTCTGGGCG 675 | || ||||| |||| || | |||||| || || ||||||||||| | |||| |||||| Sbjct 645 ATTCGAACGGAAATATCTTCACCGATCGGGTTTCGATGGGGGAAGACCGTTTT-TGGGCG 703 Query 676 GTTCGAGGAGGTGGAGCCGCAAGTTTCGGTATCGTGATGGGATACAAAATCCGGTTGGTT 735 |||| |||||||| || || || | |||| | || | || ||||| |||| | | || Sbjct 704 ATTCGTGGAGGTGGTGCAGCGAGCTACGGTGTTGTCCTCGGCTACAAGATCCAGCTAGTA 763 Query 736 CCGGTGCCGGAGAAAGTAACGGTTTTTAGCGTTGGAAAAACCGTCGGAGAAGGAGCCGTT 795 |||||||| |||||||| |||||||||| || |||||||| |||||||||||||||||| Sbjct 764 CCGGTGCCTGAGAAAGTTACGGTTTTTAAAGTCGGAAAAACTGTCGGAGAAGGAGCCGTT 823 Query 796 GATCTTATAACGAAGTGGCAGAATTTTTCTCACAGTACGGATCGGAATTTGTTCGTGAAG 855 |||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||| | Sbjct 824 GATCTTATAATGAAGTGGCAGAGTTTTGCTCATAGTACGGATCGGAATTTGTTCGTGAGG 883 Query 856 CTGACTTTGACTTTGGTCAACGGTACAAAGCCGGGTGAAAAAACTGTTTTAGCGACTTTC 915 | ||||||||||| ||||||||||| ||||| ||||| || || ||||||||||||||| Sbjct 884 TTAACTTTGACTTTAGTCAACGGTACGAAGCCTGGTGAGAATACGGTTTTAGCGACTTTC 943 Query 916 ATTGGGATGAATTTAGGCGGGTTGGATAAGAC-GTTGAACGTGATGAACCGGGATTTCCC 974 ||||||||| |||||||| ||| ||||||| | ||||| ||||||||||||||||||||| Sbjct 944 ATTGGGATGTATTTAGGCCGGTCGGATAAG-CTGTTGACCGTGATGAACCGGGATTTCCC 1002 Query 975 AGAGTTAAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTT 1034 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1003 GGAGTTGAAGCTGAAGAAAACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTT 1062 Query 1035 TTGGGCCGGTTTTCCGATTGGCACACCAACTTCTGTGTTACTAAA-CC-CTAGAGTTACA 1092 ||||| || || |||| |||| ||||| ||||||||| ||||||| || |||| | || Sbjct 1063 TTGGGACGATTATCCGGTTGGTACACCGACTTCTGTGCTACTAAATCCGCTAG--TCGCA 1120 Query 1093 AAAAAGTTGTTCATGAAACGGAAATCAGACTACGTGAAGCGTCCGATTTCGAGAACCGGC 1152 |||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| Sbjct 1121 AAAAAGTTGTTCATGAAACGAAAATCGGACTACGTGAAGCGTCTGATTTCGAGAACCGAT 1180 Query 1153 CTCGGTTTGATACTCAAGAAATTGGTTGAGGTTGATAAAGTTGAAATGAATTGGATTCCA 1212 |||||||||||||||||||||||||| |||||||| |||||| |||||||||||| ||| Sbjct 1181 CTCGGTTTGATACTCAAGAAATTGGTAGAGGTTGAGAAAGTTAAAATGAATTGGAATCCG 1240 Query 1213 TATGGAGGAAGAATGGGGGAGATCCCGAGTTCGAGGACACCTTTCCCACATAGAGAAGGA 1272 ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||| Sbjct 1241 TATGGAGGAAGGATGGGTGAGATCCCGAGTTCGAGGACACCATTCCCACATAGAGCAGGC 1300 Query 1273 AATTTGTTCAACATTGAGTATATCATAGACTGGTCGGAAGCTGGAGATGACGTGGAAAAG 1332 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||| Sbjct 1301 AATTTGTTCAACATTGAGTATATCATAGACTGGTCAGAAGCTGGAGATAATGTGGAGAAG 1360 Query 1333 GA-TCATTTGGCAAGT-GC-AAGTGAGATGT-ACAAATTCATGACCCCATACGTGTCTAG 1388 | | |||||||| | || || ||| || | | | |||||||||||| ||||||||||| Sbjct 1361 AAAT-ATTTGGCAC-TCGCGAA-TGA-ATTTTATAGATTCATGACCCCGTACGTGTCTAG 1416 Query 1389 TAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTCGACATAGGGTCAGGTGTTAATTC 1448 |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || Sbjct 1417 TAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTTGACATAGGGTCAAGTGTTAAGTC 1476 Query 1449 CACGTACCAGGAAGGTAAAATCTATGGGGCGAAATATTTCAAAGACAATTTCGAAAGGTT 1508 ||||||||||||||||||||||| ||||| ||||||||||| || |||||||| || || Sbjct 1477 TACGTACCAGGAAGGTAAAATCTACGGGGCTAAATATTTCAAGGAGAATTTCGAGAGATT 1536 Query 1509 AGTGGATATCAAAACCAAG-TTCGATGAA-ATAAACTTTTGGAGGAACGAACAAAGTATT 1566 ||||||||| ||||||| | || |||| | ||||||||||| ||||||||||| ||| Sbjct 1537 AGTGGATATTAAAACCACGATT-GATGCGGA-AAACTTTTGGAAAAACGAACAAAGCATT 1594 Query 1567 CCGGTTCGAA 1576 |||||| ||| Sbjct 1595 CCGGTTAGAA 1604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78061847475 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5