BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473319
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152... 737 0.0
ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:843... 737 0.0
> ATCG01310.1 | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312
FORWARD LENGTH=825
Length=825
Score = 737 bits (399), Expect = 0.0
Identities = 408/412 (99%), Gaps = 1/412 (0%)
Strand=Plus/Plus
Query 325 ACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATCACACTTGGAAAGGGTGGA 384
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 391 ACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATCACACTTGGAAGGGGTGGA 450
Query 385 CAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCC 510
Query 445 ACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC 570
Query 505 GGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCAAAATGT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 571 GGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCGAAATGT 630
Query 565 TGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTCGACCATCCCCAT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTCGACCATCCCCAT 690
Query 625 GGAGGTGGTGAAGGGAGGGCTCCAATTGGTAGaaaaaaaCCCGTAAACCCCTGGGGTTAT 684
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 691 GGAGGTGGTGAAGGGAGGGCTCCAATTGGTAGAAAAAAACCCGTAACCCCCTGGGGTTAT 750
Query 685 CCTGCACTTGGAAGAAGAACTAGAAAA-GGAAAAAATATAGTGAGACTTTGA 735
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 751 CCTGCACTTGGAAGAAGAACTAGAAAAAGGAAAAAATATAGTGAGACTTTGA 802
Score = 355 bits (192), Expect = 3e-97
Identities = 192/192 (100%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 122 GGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGCAAAAGACATAT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGCAAAAGACATAT 217
Query 182 ATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATAC 277
Query 242 ACTATGGGGATGGTGAGAAGAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 ACTATGGGGATGGTGAGAAGAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATA 337
Query 302 CCATTGTTTCTG 313
||||||||||||
Sbjct 338 CCATTGTTTCTG 349
Score = 209 bits (113), Expect = 3e-53
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCTTAGACGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
Query 121 CG 122
||
Sbjct 121 CG 122
> ATCG00830.1 | Symbols: RPL2.1 | ribosomal protein L2 | chrC:84337-85843
REVERSE LENGTH=825
Length=825
Score = 737 bits (399), Expect = 0.0
Identities = 408/412 (99%), Gaps = 1/412 (0%)
Strand=Plus/Plus
Query 325 ACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATCACACTTGGAAAGGGTGGA 384
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 391 ACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATCACACTTGGAAGGGGTGGA 450
Query 385 CAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCC 510
Query 445 ACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTC 570
Query 505 GGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCAAAATGT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 571 GGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCGAAATGT 630
Query 565 TGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTCGACCATCCCCAT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTCGACCATCCCCAT 690
Query 625 GGAGGTGGTGAAGGGAGGGCTCCAATTGGTAGaaaaaaaCCCGTAAACCCCTGGGGTTAT 684
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 691 GGAGGTGGTGAAGGGAGGGCTCCAATTGGTAGAAAAAAACCCGTAACCCCCTGGGGTTAT 750
Query 685 CCTGCACTTGGAAGAAGAACTAGAAAA-GGAAAAAATATAGTGAGACTTTGA 735
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 751 CCTGCACTTGGAAGAAGAACTAGAAAAAGGAAAAAATATAGTGAGACTTTGA 802
Score = 355 bits (192), Expect = 3e-97
Identities = 192/192 (100%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 122 GGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGCAAAAGACATAT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGCAAAAGACATAT 217
Query 182 ATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 ATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATAC 277
Query 242 ACTATGGGGATGGTGAGAAGAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 ACTATGGGGATGGTGAGAAGAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATA 337
Query 302 CCATTGTTTCTG 313
||||||||||||
Sbjct 338 CCATTGTTTCTG 349
Score = 209 bits (113), Expect = 3e-53
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCTTAGACGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGT 60
Query 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGGCAGCATCATTGTGGTAAAGGT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGT 120
Query 121 CG 122
||
Sbjct 121 CG 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5